Wall clock time and date at job start Tue Mar 31 2020 14:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99307 * 2 1 4 4 C 1.38653 * 119.90609 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.92106 * 180.02562 * 4 3 2 6 6 C 1.38040 * 120.01870 * 0.07190 * 5 4 3 7 7 C 1.39159 * 120.33386 * 359.96295 * 6 5 4 8 8 C 1.38315 * 119.72671 * 359.88479 * 7 6 5 9 9 C 1.50756 * 121.43045 * 180.45043 * 8 7 6 10 10 C 1.53077 * 109.68004 * 342.17402 * 9 8 7 11 11 H 1.09001 * 109.73292 * 288.46665 * 10 9 8 12 12 N 1.46508 * 109.70065 * 167.88773 * 10 9 8 13 13 C 1.39077 * 120.00136 * 156.16605 * 12 10 9 14 14 C 1.38752 * 119.65587 * 0.02562 * 13 12 10 15 15 C 1.40767 * 118.66746 * 179.71913 * 14 13 12 16 16 C 1.41550 * 120.99536 * 180.29917 * 15 14 13 17 17 H 1.08006 * 119.99842 * 23.19285 * 16 15 14 18 18 C 1.40027 * 120.00345 * 203.19847 * 16 15 14 19 19 N 1.30742 * 119.99942 * 17.26545 * 18 16 15 20 20 Si 1.86805 * 119.99875 * 197.26658 * 18 16 15 21 21 H 1.48507 * 109.46683 * 89.99995 * 20 18 16 22 22 H 1.48503 * 109.46884 * 209.99464 * 20 18 16 23 23 H 1.48497 * 109.47436 * 329.99716 * 20 18 16 24 24 C 1.41193 * 118.01465 * 0.28392 * 15 14 13 25 25 C 1.36551 * 119.14367 * 359.97438 * 24 15 14 26 26 N 1.32093 * 121.27467 * 0.02562 * 25 24 15 27 27 C 1.53404 * 108.28605 * 48.19091 * 10 9 8 28 28 O 1.35844 * 118.48421 * 179.83398 * 7 6 5 29 29 H 1.08995 * 109.47505 * 299.99918 * 1 2 3 30 30 H 1.09003 * 109.46948 * 60.00693 * 1 2 3 31 31 H 1.09002 * 109.46639 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.03717 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.98851 * 180.02562 * 5 4 3 34 34 H 1.07996 * 119.82938 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.44644 * 222.10048 * 9 8 7 36 36 H 1.09005 * 109.42561 * 102.23263 * 9 8 7 37 37 H 0.96998 * 119.99790 * 336.17615 * 12 10 9 38 38 H 1.07996 * 120.66192 * 0.02562 * 14 13 12 39 39 H 0.97000 * 119.99924 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.42766 * 179.97438 * 24 15 14 41 41 H 1.08003 * 119.36225 * 180.02562 * 25 24 15 42 42 H 1.08993 * 109.68542 * 55.02570 * 27 10 9 43 43 H 1.09011 * 109.68269 * 175.57873 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2887 2.3725 -0.0005 5 6 1.9154 3.6037 -0.0011 6 6 3.2938 3.6769 -0.0026 7 6 4.0594 2.5148 -0.0028 8 6 3.4336 1.2813 0.0009 9 6 4.2251 -0.0017 0.0110 10 6 5.6655 0.2777 -0.4256 11 1 5.6903 0.4986 -1.4927 12 7 6.5026 -0.8912 -0.1437 13 6 7.6761 -1.0955 -0.8615 14 6 8.0476 -0.1875 -1.8427 15 6 9.2425 -0.4113 -2.5524 16 6 9.6716 0.4866 -3.5590 17 1 9.3266 1.5101 -3.5525 18 6 10.5434 0.0481 -4.5632 19 7 10.6976 -1.2317 -4.7820 20 14 11.4861 1.2915 -5.5903 21 1 12.7860 1.5892 -4.9368 22 1 11.7293 0.7323 -6.9443 23 1 10.6924 2.5413 -5.7060 24 6 10.0005 -1.5581 -2.2300 25 6 9.5516 -2.3985 -1.2518 26 7 8.4251 -2.1583 -0.6051 27 6 6.1822 1.4865 0.3651 28 8 5.4129 2.6306 -0.0077 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2102 2.3147 -0.0014 33 1 1.3267 4.5091 -0.0011 34 1 3.7806 4.6409 -0.0034 35 1 3.7696 -0.7145 -0.6763 36 1 4.2258 -0.4194 1.0178 37 1 6.2382 -1.5227 0.5434 38 1 7.4349 0.6764 -2.0541 39 1 11.3018 -1.5355 -5.4774 40 1 10.9233 -1.7679 -2.7503 41 1 10.1288 -3.2765 -1.0020 42 1 6.0707 1.3013 1.4334 43 1 7.2326 1.6577 0.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160133620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:59 Heat of formation + Delta-G solvation = -33.375600 kcal Electronic energy + Delta-G solvation = -26878.940432 eV Core-core repulsion = 23081.544343 eV Total energy + Delta-G solvation = -3797.396089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02588 -40.50098 -40.00351 -37.74477 -37.04442 -35.87054 -33.80424 -32.58995 -31.34274 -30.58549 -28.99953 -28.15371 -27.86341 -26.78448 -24.67714 -23.29600 -23.13055 -22.58047 -21.01580 -19.59641 -19.39581 -18.26208 -17.82567 -17.29074 -17.07578 -16.83285 -16.65143 -16.37404 -16.09635 -16.03191 -15.62412 -15.39999 -14.83614 -14.76133 -14.44339 -14.34056 -14.24057 -13.97414 -13.81728 -13.24339 -13.18025 -12.92793 -12.84448 -12.77425 -12.58917 -12.41979 -11.97890 -11.86752 -11.86067 -11.71257 -11.60386 -11.25681 -10.71853 -9.95632 -9.86995 -9.40190 -9.06523 -8.72317 -8.31882 -6.56913 0.29774 0.41968 0.95442 1.15312 1.38285 1.51966 1.59384 2.03609 2.18565 2.27557 2.55179 2.73549 2.78159 3.50497 3.55933 3.77019 3.86463 3.89531 4.03787 4.16895 4.22596 4.25629 4.37356 4.43009 4.47019 4.47782 4.58172 4.64362 4.76648 4.78689 4.88828 4.97938 5.00745 5.03584 5.12183 5.24635 5.27654 5.29874 5.45397 5.59692 5.63851 5.87999 6.09281 6.23949 6.34161 6.46444 6.52172 6.84926 6.86777 6.99468 7.83822 8.25213 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.003006 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.607273 B = 9313.953958 C =10202.384398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.153 3.847 4 C -0.239 4.239 5 C -0.041 4.041 6 C -0.196 4.196 7 C 0.144 3.856 8 C -0.209 4.209 9 C -0.058 4.058 10 C 0.139 3.861 11 H 0.067 0.933 12 N -0.718 5.718 13 C 0.400 3.600 14 C -0.354 4.354 15 C 0.129 3.871 16 C -0.489 4.489 17 H 0.077 0.923 18 C 0.040 3.960 19 N -0.810 5.810 20 Si 0.987 3.013 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.269 4.269 25 C 0.117 3.883 26 N -0.630 5.630 27 C 0.054 3.946 28 O -0.320 6.320 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.293 0.707 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 7.157 8.158 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.107 3.893 4 C -0.257 4.257 5 C -0.059 4.059 6 C -0.215 4.215 7 C 0.099 3.901 8 C -0.211 4.211 9 C -0.096 4.096 10 C 0.032 3.968 11 H 0.085 0.915 12 N -0.355 5.355 13 C 0.168 3.832 14 C -0.381 4.381 15 C 0.121 3.879 16 C -0.520 4.520 17 H 0.095 0.905 18 C -0.178 4.178 19 N -0.435 5.435 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.183 1.183 24 C -0.293 4.293 25 C -0.032 4.032 26 N -0.354 5.354 27 C -0.023 4.023 28 O -0.233 6.233 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.390 6.490 8.526 21.284 hybrid contribution 0.737 0.372 -1.023 1.315 sum -17.653 6.863 7.502 20.372 Atomic orbital electron populations 1.23382 0.76105 1.05531 1.02605 1.86055 1.23697 1.26664 1.88128 1.18711 0.90529 0.85446 0.94586 1.21438 1.01370 0.91435 1.11487 1.21087 0.92748 0.98506 0.93555 1.20796 0.94179 0.96701 1.09790 1.18830 0.82567 0.93378 0.95358 1.19038 0.92445 0.94140 1.15450 1.20337 0.91190 0.94897 1.03130 1.21217 0.90368 0.85782 0.99461 0.91514 1.43934 1.21980 1.27482 1.42140 1.18102 0.86632 0.89768 0.88658 1.21227 1.02039 1.05899 1.08918 1.17984 0.88945 0.91339 0.89668 1.19878 1.25440 0.98003 1.08631 0.90504 1.26850 0.95292 0.97720 0.97896 1.69840 1.29118 1.17051 1.27481 0.85141 0.78691 0.78379 0.77135 1.18340 1.18855 1.18275 1.21783 1.03626 1.00390 1.03551 1.21759 0.91655 0.97754 0.92039 1.66884 1.10531 1.22919 1.35101 1.23485 0.95210 0.84099 0.99524 1.86035 1.15164 1.38328 1.83783 0.91047 0.91501 0.86699 0.82352 0.81581 0.84116 0.90000 0.89149 0.76124 0.88313 0.89653 0.86870 0.83633 0.90112 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.15 9.64 -92.44 -0.89 -8.04 16 3 C 0.15 3.58 6.65 22.54 0.15 3.73 16 4 C -0.24 -4.23 9.03 22.35 0.20 -4.03 16 5 C -0.04 -0.70 10.03 22.20 0.22 -0.48 16 6 C -0.20 -4.47 9.93 22.44 0.22 -4.25 16 7 C 0.14 4.11 6.47 22.51 0.15 4.26 16 8 C -0.21 -5.76 5.76 -19.66 -0.11 -5.87 16 9 C -0.06 -1.64 4.96 29.89 0.15 -1.49 16 10 C 0.14 4.65 2.35 45.15 0.11 4.76 16 11 H 0.07 2.61 6.50 -2.39 -0.02 2.60 16 12 N -0.72 -26.77 5.27 -323.92 -1.71 -28.48 16 13 C 0.40 18.91 7.64 132.91 1.01 19.93 16 14 C -0.35 -18.29 8.67 23.01 0.20 -18.09 16 15 C 0.13 7.20 5.61 -21.12 -0.12 7.09 16 16 C -0.49 -26.86 9.12 23.52 0.21 -26.65 16 17 H 0.08 4.11 7.90 -2.91 -0.02 4.08 16 18 C 0.04 2.02 5.20 85.29 0.44 2.46 16 19 N -0.81 -42.06 10.90 21.84 0.24 -41.83 16 20 Si 0.99 37.91 29.59 68.60 2.03 39.94 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 C -0.27 -14.56 8.75 22.60 0.20 -14.36 16 25 C 0.12 5.80 11.10 84.26 0.94 6.73 16 26 N -0.63 -30.87 10.37 -194.47 -2.02 -32.88 16 27 C 0.05 1.70 6.54 72.12 0.47 2.17 16 28 O -0.32 -10.28 10.27 -91.80 -0.94 -11.22 16 29 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 30 H 0.07 0.63 7.65 -2.39 -0.02 0.61 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.16 1.76 6.28 -2.91 -0.02 1.74 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.08 2.40 7.84 -2.39 -0.02 2.38 16 36 H 0.09 2.28 8.10 -2.38 -0.02 2.26 16 37 H 0.40 13.43 8.69 -92.71 -0.81 12.62 16 38 H 0.10 4.96 6.21 -2.91 -0.02 4.95 16 39 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 40 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 41 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.10 3.47 7.81 -2.38 -0.02 3.46 16 Total: -1.00 -66.57 354.52 2.51 -64.05 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: 0.25 Total: 41.23 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.55 Total: -22.78 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.49 Total: -103.19 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.83 Total: -19.26 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -66.57 2.51 -64.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160133620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.676 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds