Wall clock time and date at job start Tue Mar 31 2020 14:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00078 * 2 1 4 4 C 1.38746 * 120.05716 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94832 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05207 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11308 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05766 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.03256 * 179.97438 * 8 7 6 10 10 N 1.46497 * 112.99958 * 113.32099 * 9 8 7 11 11 C 1.39071 * 120.00522 * 294.22264 * 10 9 8 12 12 C 1.38750 * 119.65598 * 353.86376 * 11 10 9 13 13 C 1.40777 * 118.66979 * 179.75857 * 12 11 10 14 14 C 1.41553 * 120.99308 * 180.25991 * 13 12 11 15 15 H 1.08002 * 120.00092 * 27.91276 * 14 13 12 16 16 C 1.40034 * 119.99798 * 207.91591 * 14 13 12 17 17 N 1.30741 * 119.99786 * 10.83760 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 190.84388 * 16 14 13 19 19 H 1.48493 * 109.47292 * 94.98881 * 18 16 14 20 20 H 1.48504 * 109.46848 * 214.99071 * 18 16 14 21 21 H 1.48508 * 109.46992 * 334.98613 * 18 16 14 22 22 C 1.41189 * 118.01405 * 0.50770 * 13 12 11 23 23 C 1.36559 * 119.14382 * 359.74619 * 22 13 12 24 24 N 1.32092 * 121.26990 * 359.97438 * 23 22 13 25 25 C 1.54035 * 113.81427 * 341.49992 * 9 8 7 26 26 O 1.44449 * 85.42479 * 223.23517 * 25 9 8 27 27 C 1.44176 * 93.37869 * 24.09000 * 26 25 9 28 28 H 1.09001 * 109.47078 * 59.99514 * 1 2 3 29 29 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47308 * 299.99804 * 1 2 3 31 31 H 1.08009 * 120.02850 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.97663 * 179.72068 * 5 4 3 33 33 H 1.08005 * 119.94512 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.97195 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99407 * 114.22180 * 10 9 8 36 36 H 1.08001 * 120.66399 * 0.02562 * 12 11 10 37 37 H 0.97004 * 119.99301 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.42872 * 179.78418 * 22 13 12 39 39 H 1.07998 * 119.36352 * 180.02562 * 23 22 13 40 40 H 1.08998 * 113.86506 * 337.34029 * 25 9 8 41 41 H 1.08998 * 113.86759 * 109.04483 * 25 9 8 42 42 H 1.08999 * 113.86113 * 221.77193 * 27 26 25 43 43 H 1.08997 * 113.98112 * 90.07261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0011 8 6 3.4311 1.2847 -0.0005 9 6 4.2537 0.0220 -0.0017 10 7 4.1202 -0.7492 1.2367 11 6 4.5904 -0.2255 2.4362 12 6 5.2976 0.9683 2.4338 13 6 5.7594 1.4821 3.6603 14 6 6.4810 2.6987 3.7156 15 1 6.3179 3.4578 2.9649 16 6 7.4064 2.9177 4.7435 17 7 7.7616 1.9312 5.5244 18 14 8.1332 4.6195 4.9988 19 1 7.3489 5.3429 6.0316 20 1 9.5435 4.4933 5.4464 21 1 8.0851 5.3751 3.7212 22 6 5.4860 0.7452 4.8332 23 6 4.7865 -0.4237 4.7362 24 7 4.3628 -0.8744 3.5691 25 6 5.7124 0.2304 -0.4505 26 8 5.5273 -0.9793 -1.2180 27 6 4.0955 -0.8221 -1.2804 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3204 0.0005 32 1 1.3341 4.5113 -0.0041 33 1 3.7923 4.6380 -0.0014 34 1 5.1344 2.5752 -0.0019 35 1 3.7039 -1.6252 1.2200 36 1 5.4861 1.4949 1.5099 37 1 8.4024 2.0831 6.2367 38 1 5.8251 1.1015 5.7946 39 1 4.5750 -0.9900 5.6312 40 1 5.8631 1.1210 -1.0606 41 1 6.4397 0.1358 0.3558 42 1 3.5432 -1.7499 -1.1307 43 1 3.7494 -0.2541 -2.1438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161274073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:26 Heat of formation + Delta-G solvation = 26.245414 kcal Electronic energy + Delta-G solvation = -28399.789984 eV Core-core repulsion = 24604.979256 eV Total energy + Delta-G solvation = -3794.810728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05663 -39.44927 -38.14946 -37.17752 -34.56559 -33.60837 -31.43811 -30.49945 -30.04110 -28.45143 -27.52621 -26.56792 -26.41176 -25.67280 -22.69696 -21.86990 -21.53408 -21.02769 -19.30779 -18.18317 -17.52582 -16.40790 -16.27965 -16.16793 -15.72568 -15.62123 -15.12755 -15.03939 -14.64590 -14.40884 -14.23983 -13.71740 -13.56472 -13.22742 -12.99099 -12.83199 -12.48241 -12.29952 -12.17372 -11.94877 -11.61043 -11.42360 -11.31357 -11.19395 -11.05207 -10.84405 -10.70657 -10.57260 -10.24590 -9.87487 -9.60937 -9.39113 -8.88169 -8.67377 -8.00728 -7.88863 -7.84815 -6.76476 -6.43032 -4.52847 1.44011 1.61332 2.82452 3.05581 3.08496 3.09531 3.35236 3.36558 3.71104 3.82318 3.91428 4.14821 4.47108 4.72816 4.81958 4.94343 5.05404 5.12433 5.18601 5.36545 5.40664 5.42993 5.46654 5.56399 5.69124 5.79709 5.81877 5.95533 6.06783 6.17012 6.21160 6.30266 6.44531 6.53457 6.68631 6.80770 6.90388 6.94381 6.99556 7.06184 7.31419 7.49545 7.58641 7.87010 8.08209 8.11965 8.48674 8.73513 8.87666 8.93856 9.80215 10.19541 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.004661 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.441048 B = 6005.325628 C = 6535.929223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.146 3.854 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.058 4.058 8 C -0.121 4.121 9 C 0.190 3.810 10 N -0.709 5.709 11 C 0.399 3.601 12 C -0.328 4.328 13 C 0.156 3.844 14 C -0.458 4.458 15 H 0.077 0.923 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.238 4.238 23 C 0.113 3.887 24 N -0.618 5.618 25 C 0.022 3.978 26 O -0.376 6.376 27 C 0.048 3.952 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.395 0.605 36 H 0.104 0.896 37 H 0.280 0.720 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 1.835 -11.320 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.100 3.900 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.173 4.173 7 C -0.077 4.077 8 C -0.123 4.123 9 C 0.100 3.900 10 N -0.344 5.344 11 C 0.169 3.831 12 C -0.354 4.354 13 C 0.148 3.852 14 C -0.489 4.489 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.263 4.263 23 C -0.037 4.037 24 N -0.341 5.341 25 C -0.056 4.056 26 O -0.295 6.295 27 C -0.029 4.029 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.230 0.770 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.132 0.699 -11.302 15.195 hybrid contribution 0.260 1.614 0.555 1.726 sum -9.872 2.313 -10.747 14.775 Atomic orbital electron populations 1.23000 0.79033 1.03629 1.00972 1.86098 1.20699 1.26794 1.88468 1.18717 0.91436 0.84136 0.95666 1.21131 0.99619 0.92485 1.10154 1.20877 0.94710 0.96723 0.97618 1.21010 0.93809 0.98402 1.04032 1.20949 1.00206 0.90883 0.95633 1.19486 0.90735 0.95702 1.06390 1.21300 0.93231 0.89063 0.86427 1.43598 1.68160 1.20114 1.02492 1.17861 0.90494 0.89867 0.84891 1.21402 1.15747 1.00085 0.98197 1.17617 0.86428 0.91255 0.89915 1.19534 1.18877 1.01151 1.09350 0.90448 1.25918 0.95666 0.98221 0.94271 1.69784 1.25514 1.31869 1.14643 0.86275 0.78401 0.82219 0.79669 1.19407 1.20231 1.18552 1.21824 1.05880 0.98541 1.00021 1.21358 0.95186 0.94231 0.92910 1.66704 1.31891 1.37891 0.97609 1.24775 0.98248 0.87973 0.94622 1.89719 1.21297 1.41807 1.76642 1.24127 0.83648 0.99791 0.95349 0.93053 0.88490 0.92859 0.85865 0.86152 0.85824 0.84998 0.76957 0.87831 0.90909 0.85890 0.86543 0.89623 0.87300 0.88788 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.30 9.52 -19.44 -0.19 -4.49 16 3 C 0.15 2.21 6.58 -39.22 -0.26 1.95 16 4 C -0.22 -2.87 9.04 -39.44 -0.36 -3.22 16 5 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 6 C -0.15 -2.15 10.04 -39.56 -0.40 -2.55 16 7 C -0.06 -0.91 7.65 -39.61 -0.30 -1.21 16 8 C -0.12 -1.95 4.35 -104.47 -0.45 -2.40 16 9 C 0.19 3.16 0.38 -131.89 -0.05 3.11 16 10 N -0.71 -13.83 5.40 -55.06 -0.30 -14.13 16 11 C 0.40 9.41 7.38 -154.98 -1.14 8.26 16 12 C -0.33 -7.97 7.60 -38.43 -0.29 -8.26 16 13 C 0.16 4.16 5.58 -106.55 -0.59 3.56 16 14 C -0.46 -11.89 9.13 -37.65 -0.34 -12.23 16 15 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 16 C 0.08 1.92 5.29 -17.34 -0.09 1.82 16 17 N -0.79 -20.30 10.84 55.55 0.60 -19.70 16 18 Si 0.91 18.37 29.57 -169.99 -5.03 13.35 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.24 -6.29 8.71 -39.07 -0.34 -6.63 16 23 C 0.11 2.80 11.10 -18.05 -0.20 2.60 16 24 N -0.62 -15.38 10.37 -12.82 -0.13 -15.52 16 25 C 0.02 0.36 6.47 37.64 0.24 0.60 16 26 O -0.38 -6.36 12.46 -35.23 -0.44 -6.80 16 27 C 0.05 0.69 8.02 37.64 0.30 0.99 16 28 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.12 1.33 6.30 -52.48 -0.33 1.00 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.13 2.00 5.54 -52.49 -0.29 1.71 16 35 H 0.40 7.41 8.79 -40.82 -0.36 7.05 16 36 H 0.10 2.29 3.10 -52.49 -0.16 2.13 16 37 H 0.28 6.53 8.29 -40.82 -0.34 6.20 16 38 H 0.12 3.32 6.25 -52.49 -0.33 2.99 16 39 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 40 H 0.09 1.20 6.76 -51.93 -0.35 0.85 16 41 H 0.11 2.07 6.80 -51.93 -0.35 1.72 16 42 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 43 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -30.63 350.17 -8.94 -39.57 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.05 Total: 16.20 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.69 Total: -13.77 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.17 Total: -49.34 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.62 Total: -11.28 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.63 -8.94 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161274073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.815 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds