Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00078 * 2 1 4 4 C 1.38746 * 120.05716 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94832 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05207 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11308 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05766 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.03256 * 179.97438 * 8 7 6 10 10 N 1.46497 * 112.99958 * 113.32099 * 9 8 7 11 11 C 1.39071 * 120.00522 * 294.22264 * 10 9 8 12 12 C 1.38750 * 119.65598 * 353.86376 * 11 10 9 13 13 C 1.40777 * 118.66979 * 179.75857 * 12 11 10 14 14 C 1.41553 * 120.99308 * 180.25991 * 13 12 11 15 15 H 1.08002 * 120.00092 * 27.91276 * 14 13 12 16 16 C 1.40034 * 119.99798 * 207.91591 * 14 13 12 17 17 N 1.30741 * 119.99786 * 10.83760 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 190.84388 * 16 14 13 19 19 H 1.48493 * 109.47292 * 94.98881 * 18 16 14 20 20 H 1.48504 * 109.46848 * 214.99071 * 18 16 14 21 21 H 1.48508 * 109.46992 * 334.98613 * 18 16 14 22 22 C 1.41189 * 118.01405 * 0.50770 * 13 12 11 23 23 C 1.36559 * 119.14382 * 359.74619 * 22 13 12 24 24 N 1.32092 * 121.26990 * 359.97438 * 23 22 13 25 25 C 1.54035 * 113.81427 * 341.49992 * 9 8 7 26 26 O 1.44449 * 85.42479 * 223.23517 * 25 9 8 27 27 C 1.44176 * 93.37869 * 24.09000 * 26 25 9 28 28 H 1.09001 * 109.47078 * 59.99514 * 1 2 3 29 29 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47308 * 299.99804 * 1 2 3 31 31 H 1.08009 * 120.02850 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.97663 * 179.72068 * 5 4 3 33 33 H 1.08005 * 119.94512 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.97195 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99407 * 114.22180 * 10 9 8 36 36 H 1.08001 * 120.66399 * 0.02562 * 12 11 10 37 37 H 0.97004 * 119.99301 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.42872 * 179.78418 * 22 13 12 39 39 H 1.07998 * 119.36352 * 180.02562 * 23 22 13 40 40 H 1.08998 * 113.86506 * 337.34029 * 25 9 8 41 41 H 1.08998 * 113.86759 * 109.04483 * 25 9 8 42 42 H 1.08999 * 113.86113 * 221.77193 * 27 26 25 43 43 H 1.08997 * 113.98112 * 90.07261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0011 8 6 3.4311 1.2847 -0.0005 9 6 4.2537 0.0220 -0.0017 10 7 4.1202 -0.7492 1.2367 11 6 4.5904 -0.2255 2.4362 12 6 5.2976 0.9683 2.4338 13 6 5.7594 1.4821 3.6603 14 6 6.4810 2.6987 3.7156 15 1 6.3179 3.4578 2.9649 16 6 7.4064 2.9177 4.7435 17 7 7.7616 1.9312 5.5244 18 14 8.1332 4.6195 4.9988 19 1 7.3489 5.3429 6.0316 20 1 9.5435 4.4933 5.4464 21 1 8.0851 5.3751 3.7212 22 6 5.4860 0.7452 4.8332 23 6 4.7865 -0.4237 4.7362 24 7 4.3628 -0.8744 3.5691 25 6 5.7124 0.2304 -0.4505 26 8 5.5273 -0.9793 -1.2180 27 6 4.0955 -0.8221 -1.2804 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3204 0.0005 32 1 1.3341 4.5113 -0.0041 33 1 3.7923 4.6380 -0.0014 34 1 5.1344 2.5752 -0.0019 35 1 3.7039 -1.6252 1.2200 36 1 5.4861 1.4949 1.5099 37 1 8.4024 2.0831 6.2367 38 1 5.8251 1.1015 5.7946 39 1 4.5750 -0.9900 5.6312 40 1 5.8631 1.1210 -1.0606 41 1 6.4397 0.1358 0.3558 42 1 3.5432 -1.7499 -1.1307 43 1 3.7494 -0.2541 -2.1438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161274073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = 7.028438 kcal Electronic energy + Delta-G solvation = -28400.623294 eV Core-core repulsion = 24604.979256 eV Total energy + Delta-G solvation = -3795.644039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30674 -40.54538 -39.97932 -38.19969 -36.29814 -35.29923 -32.84932 -32.27837 -31.13614 -29.99365 -28.62737 -27.96035 -27.73574 -27.33995 -23.83101 -23.37330 -23.01017 -22.75627 -20.67488 -19.50588 -19.02947 -17.88069 -17.65441 -17.38447 -17.13932 -16.75180 -16.55773 -16.33617 -16.12871 -15.75128 -15.61031 -15.24721 -14.71746 -14.70456 -14.53386 -14.42558 -14.12323 -13.57511 -13.46754 -13.14411 -12.97058 -12.85111 -12.77854 -12.57265 -12.49341 -12.00154 -11.93541 -11.90160 -11.76962 -11.67888 -11.22966 -11.03528 -10.45267 -9.86693 -9.83636 -9.72198 -9.06507 -8.62532 -8.21573 -6.50571 0.35069 0.53917 1.01527 1.21514 1.40621 1.54113 1.61365 2.21270 2.30081 2.43243 2.64879 2.84520 2.91743 3.22527 3.64299 3.87385 3.97319 4.09654 4.20843 4.24550 4.28038 4.32991 4.41839 4.44912 4.51253 4.57594 4.63904 4.73537 4.76348 4.89971 4.96089 5.01144 5.06182 5.08397 5.14147 5.22311 5.36177 5.39131 5.49580 5.63003 5.65513 5.88449 5.96146 6.15546 6.39761 6.51135 6.59101 6.91570 6.93106 7.05862 7.89642 8.35458 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.004661 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.441048 B = 6005.325628 C = 6535.929223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.325 6.325 3 C 0.135 3.865 4 C -0.218 4.218 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.076 4.076 8 C -0.142 4.142 9 C 0.182 3.818 10 N -0.701 5.701 11 C 0.398 3.602 12 C -0.335 4.335 13 C 0.127 3.873 14 C -0.484 4.484 15 H 0.081 0.919 16 C 0.037 3.963 17 N -0.823 5.823 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.263 4.263 23 C 0.110 3.890 24 N -0.632 5.632 25 C 0.023 3.977 26 O -0.395 6.395 27 C 0.060 3.940 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.398 0.602 36 H 0.119 0.881 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 3.187 -12.626 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.238 6.238 3 C 0.089 3.911 4 C -0.236 4.236 5 C -0.097 4.097 6 C -0.183 4.183 7 C -0.095 4.095 8 C -0.144 4.144 9 C 0.093 3.907 10 N -0.335 5.335 11 C 0.166 3.834 12 C -0.362 4.362 13 C 0.119 3.881 14 C -0.515 4.515 15 H 0.099 0.901 16 C -0.179 4.179 17 N -0.449 5.449 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.177 1.177 22 C -0.288 4.288 23 C -0.040 4.040 24 N -0.356 5.356 25 C -0.055 4.055 26 O -0.314 6.314 27 C -0.016 4.016 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.490 2.029 -12.656 17.214 hybrid contribution 0.576 1.118 0.903 1.549 sum -10.914 3.147 -11.753 16.344 Atomic orbital electron populations 1.23281 0.76974 1.05251 1.01879 1.86067 1.22874 1.26510 1.88352 1.18885 0.91338 0.85189 0.95672 1.21486 1.00982 0.92011 1.09145 1.21281 0.94521 0.97896 0.95990 1.21291 0.94592 0.98562 1.03816 1.21034 1.00192 0.91591 0.96671 1.19447 0.91450 0.95265 1.08253 1.21512 0.93395 0.89895 0.85896 1.43674 1.67143 1.20368 1.02296 1.18124 0.89831 0.89647 0.85793 1.21559 1.15831 1.00583 0.98192 1.18029 0.87180 0.92054 0.90815 1.19799 1.19802 1.01364 1.10574 0.90126 1.26813 0.95520 1.02234 0.93336 1.69853 1.25955 1.34041 1.15082 0.85148 0.77664 0.76825 0.79834 1.18796 1.19430 1.17698 1.21789 1.07665 0.99770 0.99602 1.21694 0.94449 0.93940 0.93931 1.66824 1.32502 1.38219 0.98006 1.24735 0.97529 0.88851 0.94376 1.89693 1.23068 1.42011 1.76602 1.24290 0.82308 1.00236 0.94785 0.90922 0.86679 0.93044 0.83289 0.83088 0.84215 0.85666 0.76629 0.86282 0.90156 0.87209 0.84324 0.87169 0.90419 0.87565 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.32 -8.47 9.52 -92.46 -0.88 -9.35 16 3 C 0.14 3.86 6.58 22.51 0.15 4.01 16 4 C -0.22 -5.24 9.04 22.36 0.20 -5.04 16 5 C -0.08 -1.83 10.04 22.25 0.22 -1.60 16 6 C -0.16 -4.33 10.04 22.28 0.22 -4.11 16 7 C -0.08 -2.34 7.65 22.25 0.17 -2.17 16 8 C -0.14 -4.47 4.35 -19.77 -0.09 -4.55 16 9 C 0.18 5.97 0.38 3.56 0.00 5.97 16 10 N -0.70 -27.41 5.40 -339.16 -1.83 -29.24 16 11 C 0.40 19.06 7.38 132.91 0.98 20.04 16 12 C -0.34 -16.74 7.60 23.01 0.17 -16.57 16 13 C 0.13 7.01 5.58 -21.12 -0.12 6.89 16 14 C -0.48 -25.74 9.13 23.52 0.21 -25.52 16 15 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 16 C 0.04 1.82 5.29 85.29 0.45 2.28 16 17 N -0.82 -43.05 10.84 21.84 0.24 -42.81 16 18 Si 0.98 37.46 29.57 68.60 2.03 39.49 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 22 C -0.26 -14.42 8.71 22.60 0.20 -14.22 16 23 C 0.11 5.59 11.10 84.26 0.94 6.52 16 24 N -0.63 -31.93 10.37 -194.48 -2.02 -33.94 16 25 C 0.02 0.76 6.47 72.30 0.47 1.23 16 26 O -0.39 -13.11 12.46 -148.98 -1.86 -14.96 16 27 C 0.06 1.63 8.02 72.30 0.58 2.21 16 28 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 0.89 7.66 -2.39 -0.02 0.87 16 31 H 0.15 2.70 6.30 -2.91 -0.02 2.68 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.13 3.84 5.54 -2.91 -0.02 3.82 16 35 H 0.40 14.85 8.79 -92.70 -0.82 14.04 16 36 H 0.12 5.42 3.10 -2.91 -0.01 5.41 16 37 H 0.29 13.60 8.29 -92.71 -0.77 12.83 16 38 H 0.11 6.18 6.25 -2.91 -0.02 6.17 16 39 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 40 H 0.11 3.07 6.76 -2.39 -0.02 3.06 16 41 H 0.08 3.08 6.80 -2.39 -0.02 3.06 16 42 H 0.11 2.58 8.09 -2.39 -0.02 2.56 16 43 H 0.11 2.47 8.09 -2.39 -0.02 2.45 16 Total: -1.00 -67.39 350.17 1.82 -65.58 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: 0.25 Total: 48.42 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.88 Total: -23.17 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.61 Total: -106.00 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -2.74 Total: -24.32 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -67.39 1.82 -65.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161274073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.607 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds