Wall clock time and date at job start Tue Mar 31 2020 14:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34718 * 116.99707 * 2 1 4 4 O 1.21467 * 120.00185 * 359.97438 * 3 2 1 5 5 C 1.47723 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.15094 * 354.32056 * 5 3 2 7 7 C 1.37920 * 119.85182 * 180.02562 * 6 5 3 8 8 C 1.38395 * 120.14680 * 359.72703 * 7 6 5 9 9 C 1.38341 * 120.30311 * 0.54791 * 8 7 6 10 10 C 1.37965 * 120.15215 * 359.45514 * 9 8 7 11 11 C 1.50696 * 120.07816 * 180.29559 * 10 9 8 12 12 C 1.53003 * 109.47186 * 101.50614 * 11 10 9 13 13 N 1.46495 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.39087 * 119.99743 * 180.02562 * 13 12 11 15 15 C 1.38742 * 119.65901 * 359.97438 * 14 13 12 16 16 C 1.40779 * 118.67057 * 180.02562 * 15 14 13 17 17 C 1.41546 * 120.99352 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00018 * 26.25784 * 17 16 15 19 19 C 1.40032 * 120.00413 * 206.25371 * 17 16 15 20 20 N 1.30744 * 119.99399 * 12.90012 * 19 17 16 21 21 Si 1.86793 * 120.00400 * 192.89884 * 19 17 16 22 22 H 1.48507 * 109.47118 * 60.00018 * 21 19 17 23 23 H 1.48496 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47187 * 299.99999 * 21 19 17 25 25 C 1.41186 * 118.01330 * 0.02562 * 16 15 14 26 26 C 1.36558 * 119.14742 * 359.97438 * 25 16 15 27 27 N 1.32097 * 121.26673 * 359.72078 * 26 25 16 28 28 H 1.09000 * 109.46834 * 300.00023 * 1 2 3 29 29 H 1.08995 * 109.47487 * 60.00148 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.07339 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.92688 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.84732 * 180.28030 * 8 7 6 34 34 H 1.08000 * 119.92583 * 179.72155 * 9 8 7 35 35 H 1.09008 * 109.47004 * 221.50234 * 11 10 9 36 36 H 1.08998 * 109.47316 * 341.50231 * 11 10 9 37 37 H 1.08998 * 109.46932 * 299.99710 * 12 11 10 38 38 H 1.08998 * 109.47305 * 59.99611 * 12 11 10 39 39 H 0.96998 * 120.00901 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.66706 * 0.02897 * 15 14 13 41 41 H 0.97002 * 119.99832 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.42481 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.36947 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5387 1.2778 -0.0006 6 6 4.3022 0.1145 0.1184 7 6 5.6791 0.1940 0.1177 8 6 6.3044 1.4224 -0.0063 9 6 5.5542 2.5793 -0.1188 10 6 4.1761 2.5142 -0.1195 11 6 3.3605 3.7748 -0.2488 12 6 2.8498 3.9067 -1.6851 13 7 2.0566 5.1319 -1.8106 14 6 1.4837 5.4672 -3.0329 15 6 1.6685 4.6365 -4.1287 16 6 1.0798 4.9962 -5.3558 17 6 1.2371 4.1852 -6.5052 18 1 1.4212 3.1264 -6.3979 19 6 1.1542 4.7556 -7.7814 20 7 1.1850 6.0553 -7.9196 21 14 0.9995 3.6596 -9.2861 22 1 -0.2352 2.8415 -9.1778 23 1 0.9290 4.5020 -10.5069 24 1 2.1810 2.7639 -9.3696 25 6 0.3287 6.1906 -5.4061 26 6 0.2018 6.9447 -4.2747 27 7 0.7628 6.5744 -3.1375 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.8155 -0.8452 0.2107 32 1 6.2707 -0.7049 0.2100 33 1 7.3829 1.4785 -0.0108 34 1 6.0484 3.5351 -0.2107 35 1 2.5132 3.7313 0.4355 36 1 3.9817 4.6363 -0.0035 37 1 3.6971 3.9503 -2.3694 38 1 2.2287 3.0453 -1.9304 39 1 1.9301 5.7090 -1.0413 40 1 2.2523 3.7321 -4.0420 41 1 1.1271 6.4505 -8.8036 42 1 -0.1395 6.5039 -6.3275 43 1 -0.3717 7.8592 -4.3092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162707836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:44 Heat of formation + Delta-G solvation = -26.246723 kcal Electronic energy + Delta-G solvation = -26642.148866 eV Core-core repulsion = 22845.061909 eV Total energy + Delta-G solvation = -3797.086958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85874 -39.06964 -38.33812 -36.65535 -35.45282 -33.92483 -32.55453 -31.73252 -30.51668 -29.19291 -27.86503 -26.86171 -25.79672 -24.26114 -23.30674 -21.89494 -21.15446 -20.65525 -20.43756 -18.07122 -17.55787 -17.01818 -16.45793 -16.06763 -15.74171 -15.56220 -15.10718 -14.89558 -14.65570 -14.19453 -14.01087 -13.66770 -13.50774 -13.45488 -13.06727 -12.82566 -12.69131 -12.40916 -12.29712 -12.21385 -11.93987 -11.48670 -11.45273 -11.28343 -11.18373 -11.10777 -10.84335 -10.73733 -10.24339 -10.06984 -9.72430 -9.36011 -9.26974 -8.99317 -8.79707 -7.85367 -7.82271 -6.73383 -6.33381 -4.49024 0.51426 1.09802 2.44153 2.58377 2.87248 3.06753 3.09863 3.15303 3.42973 3.53054 3.93487 4.12467 4.47686 4.66045 4.66135 4.80240 4.83682 5.01770 5.05926 5.12388 5.17644 5.37211 5.38862 5.44479 5.53961 5.69714 5.85205 5.89659 6.01628 6.06675 6.12262 6.16750 6.22355 6.40962 6.52558 6.63471 6.87427 6.98565 7.04830 7.10437 7.36246 7.64500 7.68882 7.92345 8.14610 8.22059 8.54122 8.81308 8.91870 8.99609 9.86888 10.21457 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.003132 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.384912 B = 8939.251745 C = 9266.794230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.500 3.500 4 O -0.482 6.482 5 C -0.125 4.125 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.081 4.081 9 C -0.128 4.128 10 C -0.007 4.007 11 C -0.107 4.107 12 C 0.161 3.839 13 N -0.739 5.739 14 C 0.400 3.600 15 C -0.332 4.332 16 C 0.157 3.843 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.078 3.922 20 N -0.791 5.791 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.243 4.243 26 C 0.115 3.885 27 N -0.623 5.623 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.389 0.611 40 H 0.095 0.905 41 H 0.281 0.719 42 H 0.124 0.876 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -12.327 14.602 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.345 3.655 4 O -0.369 6.369 5 C -0.126 4.126 6 C -0.079 4.079 7 C -0.158 4.158 8 C -0.099 4.099 9 C -0.146 4.146 10 C -0.008 4.008 11 C -0.144 4.144 12 C 0.035 3.965 13 N -0.376 5.376 14 C 0.169 3.831 15 C -0.359 4.359 16 C 0.149 3.851 17 C -0.491 4.491 18 H 0.095 0.905 19 C -0.140 4.140 20 N -0.416 5.416 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.268 4.268 26 C -0.035 4.035 27 N -0.346 5.346 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.222 0.778 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.693 -11.470 15.081 20.095 hybrid contribution -0.101 -0.767 -1.308 1.520 sum 6.591 -12.238 13.774 19.568 Atomic orbital electron populations 1.23287 0.75747 1.03625 1.03000 1.86504 1.23727 1.32799 1.84557 1.21224 0.89131 0.81654 0.73517 1.90882 1.66686 1.35051 1.44321 1.18974 0.89185 0.94600 1.09839 1.21440 0.93969 0.97694 0.94808 1.21141 0.94305 0.98173 1.02221 1.21440 1.00365 0.92408 0.95724 1.21102 0.92545 0.99341 1.01577 1.19895 0.93871 0.93571 0.93483 1.21117 1.00256 0.93573 0.99447 1.20831 0.94092 0.88015 0.93576 1.43981 1.58393 1.25529 1.09649 1.17931 0.90099 0.90190 0.84897 1.21156 1.15264 1.04767 0.94752 1.17598 0.85619 0.90745 0.91150 1.19525 1.43666 0.96022 0.89844 0.90516 1.25931 0.92011 0.95213 1.00887 1.69787 1.34944 1.11312 1.25596 0.86327 0.80001 0.80531 0.79586 1.18817 1.20259 1.19001 1.21785 1.06502 0.99635 0.98873 1.21366 0.96366 0.97473 0.88283 1.66751 1.19782 1.19176 1.28922 0.91873 0.91372 0.88110 0.84521 0.85215 0.85290 0.84810 0.87475 0.90749 0.93375 0.92847 0.77771 0.88726 0.90819 0.85869 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.33 9.83 -40.54 -0.40 -4.73 16 3 C 0.50 6.93 7.46 34.61 0.26 7.18 16 4 O -0.48 -7.87 11.65 -19.24 -0.22 -8.09 16 5 C -0.12 -1.53 5.86 -104.98 -0.62 -2.15 16 6 C -0.06 -0.59 9.62 -39.17 -0.38 -0.97 16 7 C -0.14 -1.15 10.03 -39.64 -0.40 -1.54 16 8 C -0.08 -0.67 10.04 -39.49 -0.40 -1.07 16 9 C -0.13 -1.28 9.66 -39.64 -0.38 -1.66 16 10 C -0.01 -0.09 5.18 -104.21 -0.54 -0.63 16 11 C -0.11 -1.46 4.74 -27.88 -0.13 -1.60 16 12 C 0.16 2.83 4.40 -4.04 -0.02 2.81 16 13 N -0.74 -15.19 5.73 -60.48 -0.35 -15.54 16 14 C 0.40 10.05 7.65 -154.97 -1.19 8.87 16 15 C -0.33 -8.85 9.12 -38.44 -0.35 -9.20 16 16 C 0.16 4.43 5.59 -106.56 -0.60 3.84 16 17 C -0.46 -12.60 9.12 -37.65 -0.34 -12.95 16 18 H 0.08 2.02 7.88 -52.48 -0.41 1.61 16 19 C 0.08 2.00 5.26 -17.34 -0.09 1.91 16 20 N -0.79 -20.81 10.85 55.55 0.60 -20.20 16 21 Si 0.91 18.92 29.58 -169.99 -5.03 13.89 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.24 -6.67 8.72 -39.07 -0.34 -7.01 16 26 C 0.11 2.95 11.10 -18.04 -0.20 2.75 16 27 N -0.62 -16.15 10.37 -12.82 -0.13 -16.28 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.14 1.11 7.63 -52.49 -0.40 0.71 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.13 1.13 8.02 -52.49 -0.42 0.71 16 35 H 0.11 1.58 5.88 -51.92 -0.31 1.28 16 36 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 37 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 38 H 0.05 1.04 6.29 -51.93 -0.33 0.72 16 39 H 0.39 7.39 8.60 -40.82 -0.35 7.03 16 40 H 0.09 2.41 6.71 -52.49 -0.35 2.06 16 41 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 42 H 0.12 3.41 6.22 -52.49 -0.33 3.08 16 43 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -32.50 363.48 -10.08 -42.59 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.39 Total: 12.86 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.64 Total: -9.98 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.12 Total: -52.02 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.62 Total: -12.82 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.50 -10.08 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162707836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds