Wall clock time and date at job start Tue Mar 31 2020 14:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34718 * 116.99707 * 2 1 4 4 O 1.21467 * 120.00185 * 359.97438 * 3 2 1 5 5 C 1.47723 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.15094 * 354.32056 * 5 3 2 7 7 C 1.37920 * 119.85182 * 180.02562 * 6 5 3 8 8 C 1.38395 * 120.14680 * 359.72703 * 7 6 5 9 9 C 1.38341 * 120.30311 * 0.54791 * 8 7 6 10 10 C 1.37965 * 120.15215 * 359.45514 * 9 8 7 11 11 C 1.50696 * 120.07816 * 180.29559 * 10 9 8 12 12 C 1.53003 * 109.47186 * 101.50614 * 11 10 9 13 13 N 1.46495 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.39087 * 119.99743 * 180.02562 * 13 12 11 15 15 C 1.38742 * 119.65901 * 359.97438 * 14 13 12 16 16 C 1.40779 * 118.67057 * 180.02562 * 15 14 13 17 17 C 1.41546 * 120.99352 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00018 * 26.25784 * 17 16 15 19 19 C 1.40032 * 120.00413 * 206.25371 * 17 16 15 20 20 N 1.30744 * 119.99399 * 12.90012 * 19 17 16 21 21 Si 1.86793 * 120.00400 * 192.89884 * 19 17 16 22 22 H 1.48507 * 109.47118 * 60.00018 * 21 19 17 23 23 H 1.48496 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47187 * 299.99999 * 21 19 17 25 25 C 1.41186 * 118.01330 * 0.02562 * 16 15 14 26 26 C 1.36558 * 119.14742 * 359.97438 * 25 16 15 27 27 N 1.32097 * 121.26673 * 359.72078 * 26 25 16 28 28 H 1.09000 * 109.46834 * 300.00023 * 1 2 3 29 29 H 1.08995 * 109.47487 * 60.00148 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.07339 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.92688 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.84732 * 180.28030 * 8 7 6 34 34 H 1.08000 * 119.92583 * 179.72155 * 9 8 7 35 35 H 1.09008 * 109.47004 * 221.50234 * 11 10 9 36 36 H 1.08998 * 109.47316 * 341.50231 * 11 10 9 37 37 H 1.08998 * 109.46932 * 299.99710 * 12 11 10 38 38 H 1.08998 * 109.47305 * 59.99611 * 12 11 10 39 39 H 0.96998 * 120.00901 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.66706 * 0.02897 * 15 14 13 41 41 H 0.97002 * 119.99832 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.42481 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.36947 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5387 1.2778 -0.0006 6 6 4.3022 0.1145 0.1184 7 6 5.6791 0.1940 0.1177 8 6 6.3044 1.4224 -0.0063 9 6 5.5542 2.5793 -0.1188 10 6 4.1761 2.5142 -0.1195 11 6 3.3605 3.7748 -0.2488 12 6 2.8498 3.9067 -1.6851 13 7 2.0566 5.1319 -1.8106 14 6 1.4837 5.4672 -3.0329 15 6 1.6685 4.6365 -4.1287 16 6 1.0798 4.9962 -5.3558 17 6 1.2371 4.1852 -6.5052 18 1 1.4212 3.1264 -6.3979 19 6 1.1542 4.7556 -7.7814 20 7 1.1850 6.0553 -7.9196 21 14 0.9995 3.6596 -9.2861 22 1 -0.2352 2.8415 -9.1778 23 1 0.9290 4.5020 -10.5069 24 1 2.1810 2.7639 -9.3696 25 6 0.3287 6.1906 -5.4061 26 6 0.2018 6.9447 -4.2747 27 7 0.7628 6.5744 -3.1375 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.8155 -0.8452 0.2107 32 1 6.2707 -0.7049 0.2100 33 1 7.3829 1.4785 -0.0108 34 1 6.0484 3.5351 -0.2107 35 1 2.5132 3.7313 0.4355 36 1 3.9817 4.6363 -0.0035 37 1 3.6971 3.9503 -2.3694 38 1 2.2287 3.0453 -1.9304 39 1 1.9301 5.7090 -1.0413 40 1 2.2523 3.7321 -4.0420 41 1 1.1271 6.4505 -8.8036 42 1 -0.1395 6.5039 -6.3275 43 1 -0.3717 7.8592 -4.3092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162707836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:43 Heat of formation + Delta-G solvation = -44.288085 kcal Electronic energy + Delta-G solvation = -26642.931199 eV Core-core repulsion = 22845.061909 eV Total energy + Delta-G solvation = -3797.869290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82872 -40.36213 -39.86388 -37.72960 -37.01706 -35.81072 -33.79309 -32.55913 -32.51763 -30.64583 -28.89004 -28.25187 -27.84580 -25.29836 -24.49274 -23.24723 -22.66732 -22.38624 -21.57117 -19.52523 -18.93114 -18.03276 -17.74606 -17.47413 -16.97292 -16.82704 -16.57221 -16.35918 -15.94783 -15.61745 -15.39298 -15.20932 -14.87681 -14.52185 -14.41765 -14.23680 -14.11475 -13.85690 -13.66174 -13.20161 -13.10390 -12.93775 -12.80778 -12.75011 -12.59328 -12.53385 -12.05784 -11.98678 -11.82399 -11.76940 -11.27793 -11.12895 -10.63595 -10.03260 -9.93680 -9.88648 -9.79380 -8.68681 -8.25593 -6.58497 -0.32335 0.34611 0.95342 1.17174 1.37389 1.50230 1.50307 1.59490 1.68954 2.18792 2.47854 2.79185 2.80760 3.63551 3.77022 3.78941 3.86999 4.05789 4.12206 4.22717 4.24109 4.27177 4.28551 4.44048 4.46298 4.51166 4.65415 4.78615 4.87303 4.90801 4.92154 4.97188 5.03179 5.06948 5.15761 5.29103 5.31647 5.32410 5.47295 5.56987 5.59822 5.88957 5.90717 6.10184 6.36110 6.52524 6.67708 6.84840 6.87730 7.03711 7.84756 8.28702 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.003132 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.384912 B = 8939.251745 C = 9266.794230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.495 3.505 4 O -0.519 6.519 5 C -0.149 4.149 6 C -0.063 4.063 7 C -0.132 4.132 8 C -0.074 4.074 9 C -0.133 4.133 10 C -0.030 4.030 11 C -0.092 4.092 12 C 0.166 3.834 13 N -0.728 5.728 14 C 0.398 3.602 15 C -0.356 4.356 16 C 0.130 3.870 17 C -0.492 4.492 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.816 5.816 21 Si 0.990 3.010 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.258 1.258 25 C -0.267 4.267 26 C 0.116 3.884 27 N -0.633 5.633 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.398 0.602 40 H 0.094 0.906 41 H 0.292 0.708 42 H 0.115 0.885 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.830 -13.932 14.620 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.342 3.658 4 O -0.409 6.409 5 C -0.150 4.150 6 C -0.081 4.081 7 C -0.150 4.150 8 C -0.092 4.092 9 C -0.150 4.150 10 C -0.031 4.031 11 C -0.129 4.129 12 C 0.041 3.959 13 N -0.363 5.363 14 C 0.166 3.834 15 C -0.383 4.383 16 C 0.122 3.878 17 C -0.522 4.522 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.441 5.441 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.186 1.186 24 H -0.183 1.183 25 C -0.292 4.292 26 C -0.034 4.034 27 N -0.357 5.357 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.232 0.768 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.568 -13.091 15.151 21.779 hybrid contribution -0.623 -0.309 -1.251 1.431 sum 7.944 -13.400 13.900 20.878 Atomic orbital electron populations 1.23506 0.74722 1.05741 1.02130 1.86501 1.24794 1.32022 1.84134 1.21710 0.90035 0.81552 0.72526 1.90854 1.67605 1.36152 1.46317 1.19100 0.88384 0.95793 1.11698 1.21679 0.94859 0.97296 0.94288 1.21577 0.93700 0.99553 1.00136 1.21869 1.01999 0.91636 0.93663 1.21351 0.91590 1.00975 1.01128 1.19857 0.94825 0.92687 0.95754 1.20906 1.00323 0.95594 0.96057 1.20874 0.92877 0.85778 0.96377 1.44091 1.57538 1.26300 1.08398 1.18201 0.89508 0.89643 0.86081 1.21223 1.16394 1.05443 0.95237 1.18005 0.86155 0.91533 0.92131 1.19812 1.45275 0.96104 0.91057 0.90660 1.26865 0.90684 0.96728 1.03579 1.69831 1.34100 1.13012 1.27170 0.85148 0.80122 0.78447 0.75341 1.18373 1.18588 1.18260 1.21766 1.07832 1.00366 0.99250 1.21806 0.95775 0.98034 0.87745 1.66909 1.20421 1.19509 1.28890 0.91699 0.93329 0.84473 0.83193 0.81834 0.81953 0.83404 0.88795 0.88962 0.93934 0.95102 0.76766 0.88810 0.89717 0.86687 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.36 -8.77 9.83 -56.27 -0.55 -9.33 16 3 C 0.50 14.26 7.46 70.33 0.52 14.79 16 4 O -0.52 -18.01 11.65 19.94 0.23 -17.77 16 5 C -0.15 -3.64 5.86 -20.10 -0.12 -3.76 16 6 C -0.06 -1.12 9.62 22.54 0.22 -0.91 16 7 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 8 C -0.07 -0.97 10.04 22.33 0.22 -0.74 16 9 C -0.13 -2.39 9.66 22.23 0.21 -2.17 16 10 C -0.03 -0.73 5.18 -19.60 -0.10 -0.83 16 11 C -0.09 -2.56 4.74 29.85 0.14 -2.42 16 12 C 0.17 6.08 4.40 86.38 0.38 6.46 16 13 N -0.73 -30.71 5.73 -345.25 -1.98 -32.69 16 14 C 0.40 20.59 7.65 132.90 1.02 21.61 16 15 C -0.36 -19.76 9.12 23.01 0.21 -19.55 16 16 C 0.13 7.61 5.59 -21.12 -0.12 7.49 16 17 C -0.49 -27.79 9.12 23.52 0.21 -27.58 16 18 H 0.08 4.11 7.88 -2.91 -0.02 4.09 16 19 C 0.04 1.96 5.26 85.29 0.45 2.41 16 20 N -0.82 -43.25 10.85 21.84 0.24 -43.02 16 21 Si 0.99 38.42 29.58 68.60 2.03 40.45 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 25 C -0.27 -15.10 8.72 22.60 0.20 -14.90 16 26 C 0.12 6.06 11.10 84.26 0.94 7.00 16 27 N -0.63 -33.31 10.37 -194.46 -2.02 -35.33 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.15 2.16 7.63 -2.91 -0.02 2.14 16 32 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.15 2.16 8.02 -2.91 -0.02 2.14 16 35 H 0.09 2.90 5.88 -2.38 -0.01 2.88 16 36 H 0.09 2.17 7.99 -2.39 -0.02 2.15 16 37 H 0.04 1.60 7.93 -2.39 -0.02 1.58 16 38 H 0.03 1.28 6.29 -2.39 -0.02 1.26 16 39 H 0.40 15.32 8.60 -92.71 -0.80 14.52 16 40 H 0.09 5.05 6.71 -2.91 -0.02 5.03 16 41 H 0.29 13.84 8.29 -92.71 -0.77 13.07 16 42 H 0.12 6.57 6.22 -2.91 -0.02 6.55 16 43 H 0.15 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -73.28 363.48 4.01 -69.27 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.25 Total: 41.15 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.81 Total: -12.74 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.76 Total: -111.03 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.32 Total: -27.10 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -73.28 4.01 -69.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162707836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.984 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds