Wall clock time and date at job start Tue Mar 31 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99800 * 2 1 4 4 O 1.20823 * 119.99958 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99811 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47445 * 299.99872 * 5 3 2 7 7 C 1.52998 * 109.47410 * 179.97438 * 5 3 2 8 8 N 1.46509 * 109.46570 * 64.99970 * 7 5 3 9 9 C 1.39084 * 119.99716 * 179.97438 * 8 7 5 10 10 C 1.38751 * 119.65550 * 359.73027 * 9 8 7 11 11 C 1.40781 * 118.66209 * 179.75508 * 10 9 8 12 12 C 1.41547 * 120.99046 * 180.25629 * 11 10 9 13 13 H 1.08001 * 120.00264 * 203.53266 * 12 11 10 14 14 C 1.40031 * 120.00108 * 23.52960 * 12 11 10 15 15 N 1.30744 * 119.99774 * 17.01172 * 14 12 11 16 16 Si 1.86796 * 120.00428 * 197.00470 * 14 12 11 17 17 H 1.48501 * 109.46815 * 94.64211 * 16 14 12 18 18 H 1.48501 * 109.47402 * 214.64311 * 16 14 12 19 19 H 1.48495 * 109.47111 * 334.64677 * 16 14 12 20 20 C 1.41184 * 118.01661 * 0.50601 * 11 10 9 21 21 C 1.36558 * 119.14653 * 359.75381 * 20 11 10 22 22 N 1.32097 * 121.26679 * 359.97438 * 21 20 11 23 23 C 1.50703 * 109.47252 * 59.99893 * 5 3 2 24 24 C 1.38235 * 119.99581 * 59.72525 * 23 5 3 25 25 C 1.38240 * 119.99563 * 179.81117 * 24 23 5 26 26 C 1.38230 * 120.00201 * 0.39726 * 25 24 23 27 27 C 1.38237 * 119.99839 * 359.85859 * 26 25 24 28 28 C 1.38230 * 120.00154 * 239.99947 * 23 5 3 29 29 H 1.08998 * 109.46945 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.46980 * 59.99688 * 1 2 3 31 31 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47714 * 184.99773 * 7 5 3 33 33 H 1.08994 * 109.47469 * 305.00604 * 7 5 3 34 34 H 0.96995 * 120.00498 * 0.02562 * 8 7 5 35 35 H 1.07989 * 120.66613 * 0.02562 * 10 9 8 36 36 H 0.97000 * 120.00409 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.42724 * 179.77570 * 20 11 10 38 38 H 1.07993 * 119.36623 * 180.02562 * 21 20 11 39 39 H 1.08001 * 120.00502 * 0.02562 * 24 23 5 40 40 H 1.08006 * 119.99457 * 180.23405 * 25 24 23 41 41 H 1.08002 * 120.00367 * 179.83321 * 26 25 24 42 42 H 1.07999 * 119.99763 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00310 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.0002 2.7421 -0.0002 8 7 3.5783 3.3766 1.2511 9 6 3.8634 4.7184 1.4810 10 6 4.5527 5.4477 0.5228 11 6 4.8255 6.8056 0.7749 12 6 5.5205 7.5971 -0.1707 13 1 6.0510 8.4812 0.1508 14 6 5.5203 7.2338 -1.5231 15 7 4.6334 6.3843 -1.9716 16 14 6.7870 7.9629 -2.6863 17 1 7.9461 7.0411 -2.7967 18 1 6.1766 8.1533 -4.0266 19 1 7.2455 9.2737 -2.1604 20 6 4.3901 7.3530 2.0013 21 6 3.7229 6.5552 2.8862 22 7 3.4786 5.2856 2.6153 23 6 4.1057 0.5915 -1.2295 24 6 3.7434 1.0419 -2.4852 25 6 4.2413 0.4174 -3.6136 26 6 5.0947 -0.6624 -3.4863 27 6 5.4528 -1.1161 -2.2305 28 6 4.9581 -0.4892 -1.1021 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 5.0849 2.8002 -0.0893 33 1 3.5383 3.2572 -0.8424 34 1 3.1008 2.8609 1.9196 35 1 4.8695 4.9842 -0.3996 36 1 4.6335 6.1323 -2.9083 37 1 4.5818 8.3896 2.2364 38 1 3.3878 6.9703 3.8251 39 1 3.0742 1.8837 -2.5848 40 1 3.9612 0.7717 -4.5947 41 1 5.4816 -1.1520 -4.3678 42 1 6.1193 -1.9600 -2.1310 43 1 5.2379 -0.8436 -0.1211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162999128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:44 Heat of formation + Delta-G solvation = -27.409448 kcal Electronic energy + Delta-G solvation = -27195.657326 eV Core-core repulsion = 23398.519948 eV Total energy + Delta-G solvation = -3797.137377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77996 -39.16236 -38.34892 -36.69245 -35.28675 -34.00327 -32.88465 -30.99956 -30.44266 -29.16884 -28.12199 -26.90174 -25.83104 -24.05715 -22.75189 -22.23350 -21.48260 -20.46373 -19.99063 -17.85768 -17.61890 -17.03366 -16.64789 -16.18384 -15.62983 -15.42311 -15.22349 -14.70067 -14.55145 -14.03606 -13.99165 -13.61071 -13.43658 -13.33303 -13.02967 -12.92781 -12.68313 -12.49220 -12.46769 -12.13755 -11.88353 -11.63141 -11.33337 -11.20442 -11.13018 -11.00647 -10.78277 -10.72760 -10.39118 -10.14030 -9.81869 -9.36625 -9.00008 -8.86699 -8.85882 -7.88995 -7.79665 -6.75676 -6.34250 -4.47913 1.18151 1.32435 2.26400 2.69024 2.86532 3.07425 3.11323 3.13031 3.40262 3.66026 3.93345 4.06613 4.60307 4.67696 4.78897 4.81698 4.91302 4.99912 5.04797 5.07761 5.12358 5.18538 5.40238 5.45213 5.50361 5.83143 5.84284 5.94503 6.03835 6.11952 6.26543 6.34677 6.39892 6.42993 6.48012 6.81897 6.87810 6.90448 7.04395 7.13046 7.35306 7.63572 7.80802 7.93570 8.03320 8.21776 8.50223 8.84481 8.91793 8.97953 9.84404 10.19141 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004354 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.551182 B = 6428.870584 C = 8330.309126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.460 3.540 4 O -0.476 6.476 5 C -0.048 4.048 6 H 0.118 0.882 7 C 0.163 3.837 8 N -0.737 5.737 9 C 0.390 3.610 10 C -0.278 4.278 11 C 0.152 3.848 12 C -0.458 4.458 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.783 5.783 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.261 1.261 20 C -0.303 4.303 21 C 0.131 3.869 22 N -0.623 5.623 23 C -0.074 4.074 24 C -0.104 4.104 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.100 4.100 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.385 0.615 35 H 0.127 0.873 36 H 0.279 0.721 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -16.843 -3.775 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.301 3.699 4 O -0.360 6.360 5 C -0.068 4.068 6 H 0.136 0.864 7 C 0.038 3.962 8 N -0.372 5.372 9 C 0.162 3.838 10 C -0.304 4.304 11 C 0.144 3.856 12 C -0.489 4.489 13 H 0.097 0.903 14 C -0.139 4.139 15 N -0.408 5.408 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.329 4.329 21 C -0.022 4.022 22 N -0.346 5.346 23 C -0.075 4.075 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.119 4.119 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.218 0.782 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.919 -17.154 -3.556 17.623 hybrid contribution 0.487 0.758 -1.013 1.355 sum -1.432 -16.396 -4.568 17.081 Atomic orbital electron populations 1.23233 0.76657 1.03327 1.02643 1.86513 1.23110 1.33556 1.84417 1.23527 0.91552 0.81551 0.73265 1.90798 1.66395 1.35845 1.42955 1.20345 0.87861 0.99419 0.99168 0.86365 1.20968 0.99343 0.86867 0.89042 1.43847 1.65758 1.08547 1.19083 1.18034 0.91612 0.83930 0.90219 1.21487 1.12457 0.94923 1.01570 1.17578 0.86621 0.90983 0.90438 1.19588 1.28428 1.09560 0.91338 0.90274 1.25925 0.94722 0.93998 0.99286 1.69833 1.28115 1.26584 1.16268 0.86332 0.81108 0.80423 0.79062 1.19305 1.20277 1.18518 1.21472 1.12197 0.99637 0.99546 1.21203 0.95125 0.88761 0.97099 1.66708 1.32230 1.13787 1.21872 1.19214 0.98840 0.96591 0.92854 1.21142 0.99640 0.99446 0.91946 1.21129 0.97628 0.96090 0.98527 1.21183 0.97960 0.96912 0.97502 1.21100 1.00215 1.00133 0.92446 1.21025 0.96792 0.94935 0.99100 0.91864 0.91996 0.88360 0.91196 0.90877 0.78157 0.85567 0.91006 0.88534 0.86509 0.85712 0.85833 0.86090 0.85898 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.70 10.48 -39.27 -0.41 -5.11 16 3 C 0.46 6.99 6.55 36.00 0.24 7.23 16 4 O -0.48 -8.97 15.04 -18.75 -0.28 -9.25 16 5 C -0.05 -0.67 2.52 -92.93 -0.23 -0.91 16 6 H 0.12 1.38 7.88 -51.93 -0.41 0.97 16 7 C 0.16 2.92 3.58 -4.04 -0.01 2.90 16 8 N -0.74 -15.30 4.98 -60.47 -0.30 -15.60 16 9 C 0.39 9.84 7.65 -154.98 -1.19 8.65 16 10 C -0.28 -7.46 8.02 -38.43 -0.31 -7.77 16 11 C 0.15 4.20 5.61 -106.56 -0.60 3.60 16 12 C -0.46 -12.34 9.12 -37.65 -0.34 -12.68 16 13 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 14 C 0.08 2.01 5.20 -17.34 -0.09 1.92 16 15 N -0.78 -20.22 10.91 55.55 0.61 -19.61 16 16 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.30 -7.79 9.85 -39.07 -0.38 -8.18 16 21 C 0.13 3.20 11.10 -18.04 -0.20 3.00 16 22 N -0.62 -15.91 10.37 -12.82 -0.13 -16.05 16 23 C -0.07 -0.94 4.71 -104.62 -0.49 -1.44 16 24 C -0.10 -1.36 8.86 -39.58 -0.35 -1.71 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 28 C -0.10 -1.08 9.67 -39.59 -0.38 -1.46 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16 33 H 0.07 1.49 7.19 -51.93 -0.37 1.12 16 34 H 0.39 7.53 8.28 -40.82 -0.34 7.19 16 35 H 0.13 3.39 4.84 -52.49 -0.25 3.14 16 36 H 0.28 6.53 8.29 -40.82 -0.34 6.20 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 39 H 0.12 1.76 7.65 -52.49 -0.40 1.36 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.09 7.95 -52.49 -0.42 0.68 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -32.34 368.42 -10.01 -42.35 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.53 Total: 14.33 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.48 Total: -10.23 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.17 Total: -51.26 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.69 Total: -14.36 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.34 -10.01 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162999128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.943 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds