Wall clock time and date at job start Tue Mar 31 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99800 * 2 1 4 4 O 1.20823 * 119.99958 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99811 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47445 * 299.99872 * 5 3 2 7 7 C 1.52998 * 109.47410 * 179.97438 * 5 3 2 8 8 N 1.46509 * 109.46570 * 64.99970 * 7 5 3 9 9 C 1.39084 * 119.99716 * 179.97438 * 8 7 5 10 10 C 1.38751 * 119.65550 * 359.73027 * 9 8 7 11 11 C 1.40781 * 118.66209 * 179.75508 * 10 9 8 12 12 C 1.41547 * 120.99046 * 180.25629 * 11 10 9 13 13 H 1.08001 * 120.00264 * 203.53266 * 12 11 10 14 14 C 1.40031 * 120.00108 * 23.52960 * 12 11 10 15 15 N 1.30744 * 119.99774 * 17.01172 * 14 12 11 16 16 Si 1.86796 * 120.00428 * 197.00470 * 14 12 11 17 17 H 1.48501 * 109.46815 * 94.64211 * 16 14 12 18 18 H 1.48501 * 109.47402 * 214.64311 * 16 14 12 19 19 H 1.48495 * 109.47111 * 334.64677 * 16 14 12 20 20 C 1.41184 * 118.01661 * 0.50601 * 11 10 9 21 21 C 1.36558 * 119.14653 * 359.75381 * 20 11 10 22 22 N 1.32097 * 121.26679 * 359.97438 * 21 20 11 23 23 C 1.50703 * 109.47252 * 59.99893 * 5 3 2 24 24 C 1.38235 * 119.99581 * 59.72525 * 23 5 3 25 25 C 1.38240 * 119.99563 * 179.81117 * 24 23 5 26 26 C 1.38230 * 120.00201 * 0.39726 * 25 24 23 27 27 C 1.38237 * 119.99839 * 359.85859 * 26 25 24 28 28 C 1.38230 * 120.00154 * 239.99947 * 23 5 3 29 29 H 1.08998 * 109.46945 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.46980 * 59.99688 * 1 2 3 31 31 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47714 * 184.99773 * 7 5 3 33 33 H 1.08994 * 109.47469 * 305.00604 * 7 5 3 34 34 H 0.96995 * 120.00498 * 0.02562 * 8 7 5 35 35 H 1.07989 * 120.66613 * 0.02562 * 10 9 8 36 36 H 0.97000 * 120.00409 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.42724 * 179.77570 * 20 11 10 38 38 H 1.07993 * 119.36623 * 180.02562 * 21 20 11 39 39 H 1.08001 * 120.00502 * 0.02562 * 24 23 5 40 40 H 1.08006 * 119.99457 * 180.23405 * 25 24 23 41 41 H 1.08002 * 120.00367 * 179.83321 * 26 25 24 42 42 H 1.07999 * 119.99763 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00310 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.0002 2.7421 -0.0002 8 7 3.5783 3.3766 1.2511 9 6 3.8634 4.7184 1.4810 10 6 4.5527 5.4477 0.5228 11 6 4.8255 6.8056 0.7749 12 6 5.5205 7.5971 -0.1707 13 1 6.0510 8.4812 0.1508 14 6 5.5203 7.2338 -1.5231 15 7 4.6334 6.3843 -1.9716 16 14 6.7870 7.9629 -2.6863 17 1 7.9461 7.0411 -2.7967 18 1 6.1766 8.1533 -4.0266 19 1 7.2455 9.2737 -2.1604 20 6 4.3901 7.3530 2.0013 21 6 3.7229 6.5552 2.8862 22 7 3.4786 5.2856 2.6153 23 6 4.1057 0.5915 -1.2295 24 6 3.7434 1.0419 -2.4852 25 6 4.2413 0.4174 -3.6136 26 6 5.0947 -0.6624 -3.4863 27 6 5.4528 -1.1161 -2.2305 28 6 4.9581 -0.4892 -1.1021 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 5.0849 2.8002 -0.0893 33 1 3.5383 3.2572 -0.8424 34 1 3.1008 2.8609 1.9196 35 1 4.8695 4.9842 -0.3996 36 1 4.6335 6.1323 -2.9083 37 1 4.5818 8.3896 2.2364 38 1 3.3878 6.9703 3.8251 39 1 3.0742 1.8837 -2.5848 40 1 3.9612 0.7717 -4.5947 41 1 5.4816 -1.1520 -4.3678 42 1 6.1193 -1.9600 -2.1310 43 1 5.2379 -0.8436 -0.1211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162999128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:43 Heat of formation + Delta-G solvation = -44.979258 kcal Electronic energy + Delta-G solvation = -27196.419210 eV Core-core repulsion = 23398.519948 eV Total energy + Delta-G solvation = -3797.899261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95947 -40.30118 -40.03415 -37.92674 -36.77891 -35.90608 -34.23854 -32.40836 -31.83521 -30.56089 -29.32254 -28.23682 -27.83270 -25.48823 -23.64266 -23.37621 -23.20251 -22.27950 -21.21790 -19.59457 -18.87486 -18.13541 -17.86034 -17.44328 -17.23556 -17.05492 -16.45538 -16.06612 -15.89228 -15.62446 -15.32910 -15.11191 -14.81049 -14.49183 -14.39064 -14.29092 -14.22427 -13.82342 -13.75569 -13.35876 -13.18784 -13.09514 -12.92137 -12.73862 -12.59525 -12.12991 -11.95007 -11.91237 -11.85467 -11.80226 -11.59411 -11.25170 -10.70081 -9.90539 -9.84279 -9.81920 -9.74660 -8.67468 -8.22230 -6.52756 0.29762 0.47804 1.05111 1.06539 1.14331 1.37931 1.52183 1.59323 1.62847 2.19647 2.43770 2.81803 2.84321 3.48278 3.65203 3.67100 3.84501 3.95671 4.10011 4.18692 4.25975 4.26209 4.27261 4.29609 4.53915 4.58893 4.62541 4.67244 4.80814 4.89018 4.96101 5.00808 5.08615 5.12986 5.19991 5.26778 5.33857 5.53398 5.57224 5.60297 5.64229 5.98572 6.06697 6.08245 6.31329 6.58507 6.63942 6.89947 6.91627 7.03916 7.87719 8.29573 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004354 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.551182 B = 6428.870584 C = 8330.309126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.466 3.534 4 O -0.522 6.522 5 C -0.037 4.037 6 H 0.147 0.853 7 C 0.171 3.829 8 N -0.725 5.725 9 C 0.385 3.615 10 C -0.303 4.303 11 C 0.122 3.878 12 C -0.490 4.490 13 H 0.081 0.919 14 C 0.039 3.961 15 N -0.811 5.811 16 Si 0.984 3.016 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.256 1.256 20 C -0.324 4.324 21 C 0.131 3.869 22 N -0.635 5.635 23 C -0.090 4.090 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.114 4.114 27 C -0.118 4.118 28 C -0.101 4.101 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.392 0.608 35 H 0.117 0.883 36 H 0.288 0.712 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 -19.006 -4.389 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.410 6.410 5 C -0.056 4.056 6 H 0.165 0.835 7 C 0.046 3.954 8 N -0.360 5.360 9 C 0.155 3.845 10 C -0.330 4.330 11 C 0.114 3.886 12 C -0.520 4.520 13 H 0.099 0.901 14 C -0.178 4.178 15 N -0.436 5.436 16 Si 0.804 3.196 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.180 1.180 20 C -0.349 4.349 21 C -0.021 4.021 22 N -0.359 5.359 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.132 4.132 27 C -0.136 4.136 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.226 0.774 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.172 0.828 39 H 0.116 0.884 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.622 -19.371 -4.164 19.823 hybrid contribution -0.006 1.339 -0.848 1.585 sum -0.628 -18.032 -5.013 18.726 Atomic orbital electron populations 1.23544 0.74993 1.05761 1.02211 1.86500 1.24706 1.32066 1.83688 1.23743 0.92000 0.81477 0.71842 1.90782 1.67448 1.37403 1.45393 1.20218 0.87288 0.96718 1.01348 0.83519 1.20884 0.98752 0.89164 0.86599 1.43903 1.64932 1.07184 1.20015 1.18308 0.90883 0.85448 0.89875 1.21467 1.14335 0.95237 1.01945 1.18033 0.87268 0.91674 0.91674 1.19885 1.29451 1.10160 0.92544 0.90096 1.26842 0.96338 0.94140 1.00451 1.69896 1.29265 1.27194 1.17233 0.85166 0.78076 0.79659 0.76668 1.18418 1.19157 1.17961 1.21680 1.13150 1.00568 0.99534 1.21773 0.93884 0.88391 0.98087 1.66873 1.32760 1.14395 1.21904 1.19161 1.00333 0.97854 0.91713 1.21104 1.00557 0.99637 0.93346 1.21337 0.98026 0.96681 0.98356 1.21565 0.96737 0.95950 0.98960 1.21525 0.99767 1.00471 0.91796 1.21331 0.95721 0.93940 1.00890 0.92202 0.92644 0.84434 0.91458 0.94200 0.77353 0.86530 0.90137 0.87274 0.82844 0.88378 0.84780 0.83231 0.82668 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.35 -8.99 10.48 -51.44 -0.54 -9.53 16 3 C 0.47 14.45 6.55 71.23 0.47 14.92 16 4 O -0.52 -20.67 15.04 21.97 0.33 -20.34 16 5 C -0.04 -1.02 2.52 -12.29 -0.03 -1.05 16 6 H 0.15 3.20 7.88 -2.39 -0.02 3.18 16 7 C 0.17 6.41 3.58 86.38 0.31 6.72 16 8 N -0.73 -31.08 4.98 -345.24 -1.72 -32.80 16 9 C 0.38 20.01 7.65 132.91 1.02 21.03 16 10 C -0.30 -17.01 8.02 23.01 0.18 -16.83 16 11 C 0.12 6.97 5.61 -21.12 -0.12 6.85 16 12 C -0.49 -27.16 9.12 23.52 0.21 -26.95 16 13 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 14 C 0.04 2.01 5.20 85.29 0.44 2.45 16 15 N -0.81 -43.25 10.91 21.84 0.24 -43.02 16 16 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 C -0.32 -17.01 9.85 22.60 0.22 -16.78 16 21 C 0.13 6.43 11.10 84.26 0.94 7.36 16 22 N -0.64 -32.85 10.37 -194.47 -2.02 -34.86 16 23 C -0.09 -2.25 4.71 -19.87 -0.09 -2.34 16 24 C -0.13 -3.47 8.86 22.27 0.20 -3.28 16 25 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 26 C -0.11 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 28 C -0.10 -1.92 9.67 22.27 0.22 -1.71 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.05 1.17 8.13 -2.39 -0.02 1.16 16 31 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.54 7.92 -2.39 -0.02 2.52 16 33 H 0.04 1.77 7.19 -2.39 -0.02 1.75 16 34 H 0.39 15.56 8.28 -92.71 -0.77 14.79 16 35 H 0.12 6.64 4.84 -2.92 -0.01 6.63 16 36 H 0.29 13.85 8.29 -92.71 -0.77 13.08 16 37 H 0.11 5.27 8.06 -2.91 -0.02 5.24 16 38 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 39 H 0.10 3.09 7.65 -2.91 -0.02 3.06 16 40 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.15 2.06 7.95 -2.91 -0.02 2.04 16 Total: -1.00 -73.22 368.42 4.43 -68.79 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: 0.27 Total: 45.18 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.83 Total: -13.76 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.50 Total: -110.68 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.21 Total: -29.86 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -73.22 4.43 -68.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162999128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.812 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds