Wall clock time and date at job start Tue Mar 31 2020 14:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48507 * 109.46997 * 270.95160 * 3 2 1 5 5 H 1.48503 * 109.47513 * 30.95011 * 3 2 1 6 6 H 1.48499 * 109.47400 * 150.95133 * 3 2 1 7 7 C 1.39672 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99941 * 348.58167 * 7 2 1 9 9 C 1.40903 * 120.00105 * 168.57470 * 7 2 1 10 10 C 1.38967 * 126.93494 * 334.34152 * 9 7 2 11 11 N 1.35658 * 109.24102 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.69745 * 179.97438 * 11 10 9 13 13 C 1.38140 * 110.60282 * 0.02562 * 11 10 9 14 14 C 1.39201 * 132.73764 * 180.02562 * 13 11 10 15 15 C 1.37951 * 120.12664 * 180.02562 * 14 13 11 16 16 C 1.38489 * 120.70797 * 359.67389 * 15 14 13 17 17 C 1.38690 * 120.15367 * 0.60655 * 16 15 14 18 18 N 1.39409 * 120.22743 * 179.69809 * 17 16 15 19 19 C 1.46499 * 120.00367 * 6.78447 * 18 17 16 20 20 C 1.54303 * 112.24453 * 58.30161 * 19 18 17 21 21 C 1.54323 * 105.24924 * 237.51535 * 20 19 18 22 22 N 1.48549 * 104.60918 * 336.25922 * 21 20 19 23 23 C 1.48287 * 104.24898 * 39.78884 * 22 21 20 24 24 H 1.08994 * 113.09992 * 84.63047 * 23 22 21 25 25 C 1.54276 * 109.11842 * 211.54973 * 23 22 21 26 26 C 1.51173 * 104.66590 * 86.94382 * 25 23 22 27 27 O 1.21292 * 124.89455 * 195.86209 * 26 25 23 28 28 N 1.34515 * 110.03633 * 15.84607 * 26 25 23 29 29 C 1.39806 * 119.54359 * 359.42063 * 17 16 15 30 30 H 0.96998 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.07998 * 125.37883 * 359.97438 * 10 9 7 32 32 H 1.07991 * 119.93694 * 359.97438 * 14 13 11 33 33 H 1.08004 * 119.64385 * 179.97438 * 15 14 13 34 34 H 1.08003 * 119.92391 * 180.32630 * 16 15 14 35 35 H 0.96998 * 119.99622 * 186.78347 * 18 17 16 36 36 H 1.08993 * 110.29056 * 118.57107 * 20 19 18 37 37 H 1.09003 * 110.36929 * 356.49584 * 20 19 18 38 38 H 1.08997 * 110.41055 * 217.47345 * 21 20 19 39 39 H 1.09009 * 110.50528 * 95.08982 * 21 20 19 40 40 H 1.00904 * 110.99707 * 159.35481 * 22 21 20 41 41 H 1.08996 * 110.41758 * 205.76904 * 25 23 22 42 42 H 1.08997 * 110.41637 * 328.11320 * 25 23 22 43 43 H 0.97005 * 124.08906 * 179.42576 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4722 2.0580 -1.4000 5 1 1.4525 2.6468 0.7200 6 1 3.5523 1.4345 0.6798 7 6 2.0093 -1.2096 0.0005 8 1 1.4853 -2.1356 0.1861 9 6 3.3973 -1.2218 -0.2412 10 6 4.1289 -0.2807 -0.9555 11 7 5.4358 -0.6442 -0.9657 12 1 6.1442 -0.1457 -1.4022 13 6 5.6179 -1.8232 -0.2693 14 6 6.7441 -2.5940 0.0053 15 6 6.6263 -3.7537 0.7430 16 6 5.3942 -4.1635 1.2247 17 6 4.2579 -3.4144 0.9583 18 7 3.0159 -3.8287 1.4371 19 6 2.9262 -4.9737 2.3466 20 6 3.7537 -4.7648 3.6321 21 6 4.7407 -5.9503 3.6766 22 7 4.0921 -7.0087 2.8606 23 6 3.4978 -6.2751 1.7171 24 1 4.2048 -6.1028 0.9057 25 6 2.2160 -7.0026 1.2614 26 6 1.1206 -6.4294 2.1314 27 8 0.0223 -6.9223 2.2790 28 7 1.5435 -5.2945 2.7167 29 6 4.3673 -2.2377 0.2112 30 1 -0.4850 0.8400 -0.0004 31 1 3.7212 0.6005 -1.4285 32 1 7.7116 -2.2838 -0.3604 33 1 7.5052 -4.3460 0.9511 34 1 5.3174 -5.0709 1.8053 35 1 2.2111 -3.3589 1.1681 36 1 3.1037 -4.7812 4.5068 37 1 4.2980 -3.8216 3.5839 38 1 4.8783 -6.2920 4.7024 39 1 5.6982 -5.6666 3.2396 40 1 4.7692 -7.6861 2.5430 41 1 2.0144 -6.7954 0.2105 42 1 2.3093 -8.0761 1.4254 43 1 1.0000 -4.7544 3.3117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163253926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:58 Heat of formation + Delta-G solvation = 54.745626 kcal Electronic energy + Delta-G solvation = -28590.379684 eV Core-core repulsion = 24829.097569 eV Total energy + Delta-G solvation = -3761.282115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28268 -39.91984 -38.10811 -36.11369 -34.80090 -33.89050 -33.06589 -31.55293 -30.38252 -28.63608 -28.20747 -27.72089 -25.61255 -24.46551 -22.08868 -21.70714 -21.00737 -20.51838 -20.39021 -19.34587 -17.64371 -17.37197 -16.76177 -16.45922 -15.89809 -15.35968 -15.24819 -15.14355 -14.53527 -14.34173 -14.04042 -13.81172 -13.58044 -13.42152 -13.16260 -13.07870 -12.59368 -12.36510 -12.28542 -11.78043 -11.73132 -11.66134 -11.55442 -11.31018 -11.09119 -10.88576 -10.82591 -10.44234 -10.31183 -9.81991 -9.70994 -9.58716 -9.31377 -9.16719 -8.73963 -7.80508 -7.33204 -6.76948 -6.39514 -4.22437 2.11533 2.44647 2.69872 3.02668 3.17014 3.18640 3.29889 3.74419 3.77922 4.02897 4.11137 4.22856 4.32435 4.41116 4.64707 4.67713 5.07196 5.08728 5.17268 5.26680 5.46549 5.50902 5.59101 5.61285 5.73762 5.83453 5.84601 5.91548 5.98948 6.08998 6.27107 6.46082 6.51661 6.58785 6.78021 6.84916 6.95647 7.04715 7.10590 7.13519 7.23926 7.47721 7.66277 7.90966 8.17790 8.19967 8.32735 8.44807 8.58632 8.78308 8.93008 10.27861 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.005353 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.073393 B = 5229.164810 C = 6870.256683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.082 3.918 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.432 4.432 8 H 0.083 0.917 9 C 0.049 3.951 10 C -0.173 4.173 11 N -0.580 5.580 12 H 0.397 0.603 13 C 0.140 3.860 14 C -0.209 4.209 15 C -0.057 4.057 16 C -0.295 4.295 17 C 0.289 3.711 18 N -0.736 5.736 19 C 0.399 3.601 20 C -0.142 4.142 21 C 0.033 3.967 22 N -0.654 5.654 23 C 0.037 3.963 24 H 0.107 0.893 25 C -0.144 4.144 26 C 0.539 3.461 27 O -0.536 6.536 28 N -0.715 5.715 29 C -0.184 4.184 30 H 0.280 0.720 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.414 0.586 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.342 0.658 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.354 -8.220 4.115 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.464 4.464 8 H 0.101 0.899 9 C 0.043 3.957 10 C -0.295 4.295 11 N -0.180 5.180 12 H 0.231 0.769 13 C 0.027 3.973 14 C -0.232 4.232 15 C -0.077 4.077 16 C -0.319 4.319 17 C 0.185 3.815 18 N -0.371 5.371 19 C 0.223 3.777 20 C -0.182 4.182 21 C -0.096 4.096 22 N -0.284 5.284 23 C -0.075 4.075 24 H 0.125 0.875 25 C -0.184 4.184 26 C 0.325 3.675 27 O -0.412 6.412 28 N -0.371 5.371 29 C -0.194 4.194 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.898 -8.565 4.574 13.865 hybrid contribution 0.865 2.000 -0.694 2.287 sum 10.763 -6.565 3.880 13.190 Atomic orbital electron populations 1.69744 1.07483 1.29465 1.39484 1.25867 0.94744 1.00880 0.91805 0.86368 0.80818 0.80431 0.78682 1.20288 1.22403 1.16927 1.18428 0.89677 0.94724 1.43604 0.89937 1.18125 0.92207 0.90975 0.94425 1.21530 0.83124 1.07245 1.17567 1.40969 1.08415 1.20525 1.48127 0.76902 1.17898 0.94455 0.88204 0.96768 1.19588 0.95204 0.98622 1.09807 1.20180 0.96009 0.94999 0.96510 1.20574 0.92086 1.04385 1.14879 1.16979 0.84435 0.90075 0.90025 1.45204 1.08138 1.32897 1.50901 1.20636 0.81323 0.86405 0.89371 1.23008 0.98291 0.99663 0.97273 1.23021 0.96289 0.91168 0.99089 1.63759 1.34360 1.13028 1.17251 1.23795 0.96517 0.92655 0.94516 0.87521 1.22278 0.93038 1.02535 1.00569 1.20695 0.87527 0.80267 0.78962 1.90745 1.22790 1.63860 1.63817 1.46292 1.15333 1.26338 1.49112 1.18793 0.94052 0.98136 1.08451 0.90971 0.84168 0.88186 0.87522 0.86246 0.74424 0.90045 0.88995 0.89775 0.92236 0.84267 0.87585 0.87414 0.74916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.30 13.94 55.54 0.77 -21.53 16 2 C 0.08 2.11 5.51 -17.33 -0.10 2.01 16 3 Si 0.91 20.40 24.60 -169.99 -4.18 16.22 16 4 H -0.28 -6.00 6.77 56.52 0.38 -5.62 16 5 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.25 -5.60 6.50 56.52 0.37 -5.24 16 7 C -0.43 -11.15 9.29 -38.04 -0.35 -11.50 16 8 H 0.08 2.20 6.01 -52.49 -0.32 1.88 16 9 C 0.05 1.18 5.55 -104.81 -0.58 0.60 16 10 C -0.17 -3.88 9.14 -15.59 -0.14 -4.02 16 11 N -0.58 -11.23 5.99 -9.80 -0.06 -11.29 16 12 H 0.40 6.16 8.96 -40.82 -0.37 5.79 16 13 C 0.14 2.78 7.23 -83.91 -0.61 2.17 16 14 C -0.21 -3.48 10.07 -39.33 -0.40 -3.88 16 15 C -0.06 -0.86 10.00 -39.59 -0.40 -1.25 16 16 C -0.29 -4.56 7.09 -39.32 -0.28 -4.84 16 17 C 0.29 5.34 6.02 -83.66 -0.50 4.84 16 18 N -0.74 -12.75 5.51 -46.84 -0.26 -13.01 16 19 C 0.40 5.58 1.46 -189.33 -0.28 5.31 16 20 C -0.14 -1.75 5.71 -25.36 -0.14 -1.89 16 21 C 0.03 0.33 6.81 -2.22 -0.02 0.32 16 22 N -0.65 -6.63 7.18 -101.69 -0.73 -7.36 16 23 C 0.04 0.45 3.10 -64.98 -0.20 0.25 16 24 H 0.11 1.33 5.96 -51.93 -0.31 1.02 16 25 C -0.14 -1.83 6.47 -26.98 -0.17 -2.01 16 26 C 0.54 8.59 8.45 -10.87 -0.09 8.50 16 27 O -0.54 -10.42 18.03 5.55 0.10 -10.32 16 28 N -0.71 -10.40 5.56 -48.42 -0.27 -10.67 16 29 C -0.18 -3.99 6.27 -104.76 -0.66 -4.64 16 30 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 31 H 0.14 3.11 4.67 -52.49 -0.24 2.86 16 32 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.12 1.54 1.88 -52.48 -0.10 1.44 16 35 H 0.41 8.23 5.87 -40.82 -0.24 8.00 16 36 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 37 H 0.09 1.26 7.07 -51.93 -0.37 0.89 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.57 6.31 -51.92 -0.33 0.24 16 40 H 0.34 2.71 8.92 -39.29 -0.35 2.36 16 41 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 43 H 0.41 5.70 8.96 -40.82 -0.37 5.33 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -30.02 330.65 -9.25 -39.27 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -4.69 Total: 23.74 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -4.91 Total: -10.05 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.54 Total: -63.85 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.10 Total: -10.32 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.18 Total: 16.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.02 -9.25 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163253926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.019 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds