Wall clock time and date at job start Tue Mar 31 2020 14:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48507 * 109.46997 * 270.95160 * 3 2 1 5 5 H 1.48503 * 109.47513 * 30.95011 * 3 2 1 6 6 H 1.48499 * 109.47400 * 150.95133 * 3 2 1 7 7 C 1.39672 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99941 * 348.58167 * 7 2 1 9 9 C 1.40903 * 120.00105 * 168.57470 * 7 2 1 10 10 C 1.38967 * 126.93494 * 334.34152 * 9 7 2 11 11 N 1.35658 * 109.24102 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.69745 * 179.97438 * 11 10 9 13 13 C 1.38140 * 110.60282 * 0.02562 * 11 10 9 14 14 C 1.39201 * 132.73764 * 180.02562 * 13 11 10 15 15 C 1.37951 * 120.12664 * 180.02562 * 14 13 11 16 16 C 1.38489 * 120.70797 * 359.67389 * 15 14 13 17 17 C 1.38690 * 120.15367 * 0.60655 * 16 15 14 18 18 N 1.39409 * 120.22743 * 179.69809 * 17 16 15 19 19 C 1.46499 * 120.00367 * 6.78447 * 18 17 16 20 20 C 1.54303 * 112.24453 * 58.30161 * 19 18 17 21 21 C 1.54323 * 105.24924 * 237.51535 * 20 19 18 22 22 N 1.48549 * 104.60918 * 336.25922 * 21 20 19 23 23 C 1.48287 * 104.24898 * 39.78884 * 22 21 20 24 24 H 1.08994 * 113.09992 * 84.63047 * 23 22 21 25 25 C 1.54276 * 109.11842 * 211.54973 * 23 22 21 26 26 C 1.51173 * 104.66590 * 86.94382 * 25 23 22 27 27 O 1.21292 * 124.89455 * 195.86209 * 26 25 23 28 28 N 1.34515 * 110.03633 * 15.84607 * 26 25 23 29 29 C 1.39806 * 119.54359 * 359.42063 * 17 16 15 30 30 H 0.96998 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.07998 * 125.37883 * 359.97438 * 10 9 7 32 32 H 1.07991 * 119.93694 * 359.97438 * 14 13 11 33 33 H 1.08004 * 119.64385 * 179.97438 * 15 14 13 34 34 H 1.08003 * 119.92391 * 180.32630 * 16 15 14 35 35 H 0.96998 * 119.99622 * 186.78347 * 18 17 16 36 36 H 1.08993 * 110.29056 * 118.57107 * 20 19 18 37 37 H 1.09003 * 110.36929 * 356.49584 * 20 19 18 38 38 H 1.08997 * 110.41055 * 217.47345 * 21 20 19 39 39 H 1.09009 * 110.50528 * 95.08982 * 21 20 19 40 40 H 1.00904 * 110.99707 * 159.35481 * 22 21 20 41 41 H 1.08996 * 110.41758 * 205.76904 * 25 23 22 42 42 H 1.08997 * 110.41637 * 328.11320 * 25 23 22 43 43 H 0.97005 * 124.08906 * 179.42576 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4722 2.0580 -1.4000 5 1 1.4525 2.6468 0.7200 6 1 3.5523 1.4345 0.6798 7 6 2.0093 -1.2096 0.0005 8 1 1.4853 -2.1356 0.1861 9 6 3.3973 -1.2218 -0.2412 10 6 4.1289 -0.2807 -0.9555 11 7 5.4358 -0.6442 -0.9657 12 1 6.1442 -0.1457 -1.4022 13 6 5.6179 -1.8232 -0.2693 14 6 6.7441 -2.5940 0.0053 15 6 6.6263 -3.7537 0.7430 16 6 5.3942 -4.1635 1.2247 17 6 4.2579 -3.4144 0.9583 18 7 3.0159 -3.8287 1.4371 19 6 2.9262 -4.9737 2.3466 20 6 3.7537 -4.7648 3.6321 21 6 4.7407 -5.9503 3.6766 22 7 4.0921 -7.0087 2.8606 23 6 3.4978 -6.2751 1.7171 24 1 4.2048 -6.1028 0.9057 25 6 2.2160 -7.0026 1.2614 26 6 1.1206 -6.4294 2.1314 27 8 0.0223 -6.9223 2.2790 28 7 1.5435 -5.2945 2.7167 29 6 4.3673 -2.2377 0.2112 30 1 -0.4850 0.8400 -0.0004 31 1 3.7212 0.6005 -1.4285 32 1 7.7116 -2.2838 -0.3604 33 1 7.5052 -4.3460 0.9511 34 1 5.3174 -5.0709 1.8053 35 1 2.2111 -3.3589 1.1681 36 1 3.1037 -4.7812 4.5068 37 1 4.2980 -3.8216 3.5839 38 1 4.8783 -6.2920 4.7024 39 1 5.6982 -5.6666 3.2396 40 1 4.7692 -7.6861 2.5430 41 1 2.0144 -6.7954 0.2105 42 1 2.3093 -8.0761 1.4254 43 1 1.0000 -4.7544 3.3117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163253926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:57 Heat of formation + Delta-G solvation = 29.681389 kcal Electronic energy + Delta-G solvation = -28591.466551 eV Core-core repulsion = 24829.097569 eV Total energy + Delta-G solvation = -3762.368982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44163 -41.40369 -39.39998 -37.46438 -35.99792 -35.45763 -34.57942 -32.66084 -31.96457 -29.99387 -29.49974 -28.97983 -26.77970 -26.12307 -23.38562 -22.96063 -22.22913 -21.75335 -21.61827 -20.90649 -19.11076 -18.62294 -18.19430 -17.88452 -17.20022 -16.60510 -16.52743 -16.29468 -16.13278 -15.58979 -15.40945 -15.14521 -15.00967 -14.78167 -14.70139 -14.39375 -13.76555 -13.55839 -13.42593 -13.37259 -13.16401 -12.85561 -12.78511 -12.59055 -12.42100 -12.23286 -12.19390 -11.90940 -11.82672 -11.52551 -11.12166 -11.10892 -10.79831 -10.57544 -9.58007 -9.42726 -8.80487 -8.68058 -7.86149 -6.11277 0.69407 1.04507 1.23059 1.35529 1.42245 1.49255 1.98776 2.00076 2.19169 2.62034 2.79259 3.02306 3.13195 3.24937 3.40251 3.53635 3.62198 4.05580 4.16692 4.22601 4.25424 4.36301 4.45152 4.56500 4.62434 4.70510 4.74366 4.87039 4.91446 4.98906 5.02649 5.04563 5.08451 5.30509 5.42422 5.52858 5.55829 5.70099 5.83876 5.92202 5.97083 6.03400 6.40231 6.41554 6.45994 6.70419 6.82973 6.84520 7.04798 7.10841 7.25093 8.41577 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.005353 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.073393 B = 5229.164810 C = 6870.256683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.447 4.447 8 H 0.055 0.945 9 C 0.011 3.989 10 C -0.163 4.163 11 N -0.578 5.578 12 H 0.416 0.584 13 C 0.132 3.868 14 C -0.212 4.212 15 C -0.044 4.044 16 C -0.278 4.278 17 C 0.272 3.728 18 N -0.744 5.744 19 C 0.388 3.612 20 C -0.142 4.142 21 C 0.040 3.960 22 N -0.652 5.652 23 C 0.049 3.951 24 H 0.111 0.889 25 C -0.138 4.138 26 C 0.529 3.471 27 O -0.579 6.579 28 N -0.713 5.713 29 C -0.223 4.223 30 H 0.282 0.718 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.361 0.639 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 -9.800 4.641 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.175 1.175 7 C -0.481 4.481 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.286 4.286 11 N -0.181 5.181 12 H 0.253 0.747 13 C 0.020 3.980 14 C -0.236 4.236 15 C -0.064 4.064 16 C -0.302 4.302 17 C 0.168 3.832 18 N -0.377 5.377 19 C 0.213 3.787 20 C -0.182 4.182 21 C -0.089 4.089 22 N -0.284 5.284 23 C -0.063 4.063 24 H 0.129 0.871 25 C -0.178 4.178 26 C 0.318 3.682 27 O -0.459 6.459 28 N -0.367 5.367 29 C -0.232 4.232 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.235 0.765 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 14.477 -10.167 5.103 18.412 hybrid contribution -0.365 2.322 -0.808 2.486 sum 14.112 -7.844 4.294 16.707 Atomic orbital electron populations 1.69817 1.08678 1.30112 1.42830 1.26548 0.95311 1.03555 0.91842 0.85505 0.79138 0.77122 0.79085 1.18923 1.22212 1.17549 1.18462 0.90909 0.93964 1.44756 0.92691 1.18287 0.92004 0.93238 0.96053 1.21589 0.84561 1.06356 1.16084 1.40884 1.07745 1.20937 1.48559 0.74690 1.18346 0.94943 0.88333 0.96409 1.20004 0.95342 0.98537 1.09668 1.20762 0.97148 0.94317 0.94152 1.20975 0.91234 1.04410 1.13611 1.17259 0.85675 0.90004 0.90300 1.45331 1.07303 1.33633 1.51390 1.21035 0.81182 0.86424 0.90032 1.23004 0.98583 1.00382 0.96211 1.23043 0.95651 0.89805 1.00375 1.63716 1.35386 1.13092 1.16220 1.23660 0.96263 0.91291 0.95067 0.87129 1.22308 0.92028 1.03640 0.99852 1.21305 0.87620 0.80362 0.78909 1.90712 1.24672 1.65131 1.65342 1.46410 1.15877 1.25921 1.48521 1.19103 0.94315 0.99350 1.10432 0.90788 0.84137 0.85160 0.82851 0.83432 0.76498 0.89774 0.90310 0.87781 0.90849 0.82104 0.87396 0.85366 0.75114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.22 13.94 21.79 0.30 -49.92 16 2 C 0.04 1.97 5.51 85.15 0.47 2.44 16 3 Si 0.97 43.52 24.60 68.60 1.69 45.21 16 4 H -0.26 -11.15 6.77 99.48 0.67 -10.47 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -11.40 6.50 99.48 0.65 -10.75 16 7 C -0.45 -24.55 9.29 23.27 0.22 -24.33 16 8 H 0.06 3.20 6.01 -2.91 -0.02 3.19 16 9 C 0.01 0.54 5.55 -19.99 -0.11 0.43 16 10 C -0.16 -7.31 9.14 84.28 0.77 -6.54 16 11 N -0.58 -21.49 5.99 -184.91 -1.11 -22.60 16 12 H 0.42 11.93 8.96 -92.71 -0.83 11.10 16 13 C 0.13 4.96 7.23 38.87 0.28 5.24 16 14 C -0.21 -6.14 10.07 22.43 0.23 -5.91 16 15 C -0.04 -1.08 10.00 22.26 0.22 -0.86 16 16 C -0.28 -7.56 7.09 22.44 0.16 -7.40 16 17 C 0.27 9.81 6.02 38.42 0.23 10.04 16 18 N -0.74 -26.25 5.51 -302.09 -1.66 -27.91 16 19 C 0.39 10.55 1.46 89.39 0.13 10.69 16 20 C -0.14 -3.20 5.71 31.49 0.18 -3.02 16 21 C 0.04 0.62 6.81 86.43 0.59 1.21 16 22 N -0.65 -10.61 7.18 -475.64 -3.42 -14.02 16 23 C 0.05 1.07 3.10 45.92 0.14 1.21 16 24 H 0.11 2.36 5.96 -2.39 -0.01 2.34 16 25 C -0.14 -3.33 6.47 30.43 0.20 -3.13 16 26 C 0.53 17.06 8.45 87.85 0.74 17.81 16 27 O -0.58 -23.19 18.03 -3.07 -0.06 -23.25 16 28 N -0.71 -21.19 5.56 -425.65 -2.37 -23.56 16 29 C -0.22 -9.60 6.27 -19.95 -0.13 -9.73 16 30 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 31 H 0.14 6.19 4.67 -2.91 -0.01 6.18 16 32 H 0.13 2.99 8.06 -2.92 -0.02 2.97 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.15 3.10 1.88 -2.91 -0.01 3.10 16 35 H 0.40 16.91 5.87 -92.71 -0.54 16.37 16 36 H 0.08 1.85 7.90 -2.39 -0.02 1.83 16 37 H 0.08 2.02 7.07 -2.39 -0.02 2.00 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 0.97 6.31 -2.38 -0.02 0.96 16 40 H 0.36 3.87 8.92 -89.69 -0.80 3.07 16 41 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.13 2.57 8.09 -2.39 -0.02 2.55 16 43 H 0.41 12.02 8.96 -92.70 -0.83 11.19 16 Total: -1.00 -69.97 330.65 -4.26 -74.23 By element: Atomic # 1 Polarization: 55.64 SS G_CDS: -1.96 Total: 53.69 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.32 Total: -11.86 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -8.25 Total: -138.01 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.69 Total: 45.21 kcal Total: -69.97 -4.26 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163253926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.909 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds