Wall clock time and date at job start Tue Mar 31 2020 14:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31077 * 1 3 3 Si 1.86793 * 120.00496 * 2 1 4 4 H 1.48499 * 109.47113 * 270.00362 * 3 2 1 5 5 H 1.48497 * 109.46955 * 30.00021 * 3 2 1 6 6 H 1.48495 * 109.47375 * 150.00249 * 3 2 1 7 7 C 1.39678 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.40910 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.38969 * 126.93502 * 339.78508 * 9 7 2 11 11 N 1.35659 * 109.23701 * 180.02562 * 10 9 7 12 12 H 0.97001 * 124.68816 * 179.73326 * 11 10 9 13 13 C 1.38131 * 110.60764 * 0.02562 * 11 10 9 14 14 C 1.39198 * 132.74159 * 179.97438 * 13 11 10 15 15 C 1.37946 * 120.13740 * 179.97438 * 14 13 11 16 16 C 1.38491 * 120.69998 * 0.03640 * 15 14 13 17 17 C 1.38688 * 120.16014 * 359.97438 * 16 15 14 18 18 N 1.39407 * 120.23187 * 180.02562 * 17 16 15 19 19 C 1.46504 * 119.99612 * 4.14499 * 18 17 16 20 20 C 1.53804 * 111.31125 * 182.67191 * 19 18 17 21 21 C 1.54083 * 103.79499 * 93.59880 * 20 19 18 22 22 N 1.47158 * 106.51639 * 28.22971 * 21 20 19 23 23 C 1.47321 * 109.38981 * 341.49369 * 22 21 20 24 24 H 1.09008 * 112.60640 * 236.45279 * 23 22 21 25 25 C 1.54741 * 108.13799 * 110.49283 * 23 22 21 26 26 C 1.51086 * 104.76871 * 225.91111 * 25 23 22 27 27 O 1.21282 * 124.89566 * 195.36972 * 26 25 23 28 28 N 1.35678 * 110.44354 * 15.24476 * 26 25 23 29 29 C 1.39813 * 119.54015 * 359.97438 * 17 16 15 30 30 H 0.97003 * 120.00002 * 0.02562 * 1 2 3 31 31 H 1.07996 * 125.37728 * 0.04493 * 10 9 7 32 32 H 1.07998 * 119.93175 * 359.97438 * 14 13 11 33 33 H 1.07991 * 119.64759 * 180.02562 * 15 14 13 34 34 H 1.07998 * 119.92265 * 179.97438 * 16 15 14 35 35 H 0.97001 * 120.00382 * 184.15306 * 18 17 16 36 36 H 1.09002 * 110.55838 * 212.17147 * 20 19 18 37 37 H 1.08992 * 110.56286 * 334.87054 * 20 19 18 38 38 H 1.08998 * 110.04829 * 147.49785 * 21 20 19 39 39 H 1.09003 * 110.04605 * 268.92081 * 21 20 19 40 40 H 1.00901 * 110.99500 * 104.31289 * 22 21 20 41 41 H 1.08993 * 110.37830 * 344.73385 * 25 23 22 42 42 H 1.09002 * 110.38070 * 107.09315 * 25 23 22 43 43 H 0.97004 * 124.97439 * 177.62279 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6176 0.0000 4 1 2.4923 2.0463 -1.4001 5 1 1.4424 2.6525 0.7000 6 1 3.5424 1.4400 0.6999 7 6 2.0091 -1.2097 -0.0005 8 1 3.0891 -1.2098 -0.0001 9 6 1.3045 -2.4300 -0.0005 10 6 -0.0156 -2.6320 0.3838 11 7 -0.3266 -3.9448 0.2416 12 1 -1.1907 -4.3331 0.4500 13 6 0.7595 -4.6529 -0.2347 14 6 0.9499 -5.9971 -0.5420 15 6 2.1710 -6.4340 -1.0122 16 6 3.2207 -5.5472 -1.1842 17 6 3.0540 -4.2034 -0.8844 18 7 4.1095 -3.3093 -1.0575 19 6 5.3711 -3.7700 -1.6428 20 6 6.4150 -2.6412 -1.6803 21 6 7.2087 -2.8311 -0.3733 22 7 7.1383 -4.2641 -0.0456 23 6 6.0209 -4.8799 -0.7821 24 1 5.3078 -5.3759 -0.1236 25 6 6.6137 -5.8185 -1.8602 26 6 5.8356 -5.5023 -3.1161 27 8 5.8113 -6.1964 -4.1104 28 7 5.1638 -4.3320 -2.9754 29 6 1.8195 -3.7514 -0.4082 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6878 -1.8650 0.7391 32 1 0.1399 -6.6996 -0.4119 33 1 2.3098 -7.4785 -1.2485 34 1 4.1715 -5.9029 -1.5528 35 1 4.0087 -2.3823 -0.7903 36 1 7.0691 -2.7533 -2.5450 37 1 5.9256 -1.6675 -1.6955 38 1 8.2465 -2.5317 -0.5195 39 1 6.7590 -2.2418 0.4259 40 1 8.0097 -4.7266 -0.2576 41 1 7.6728 -5.6072 -2.0066 42 1 6.4694 -6.8611 -1.5767 43 1 4.6246 -3.9140 -3.6650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163253930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:04 Heat of formation + Delta-G solvation = 43.808246 kcal Electronic energy + Delta-G solvation = -28598.408008 eV Core-core repulsion = 24836.651612 eV Total energy + Delta-G solvation = -3761.756395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40269 -39.60333 -38.02002 -36.16439 -34.58405 -33.86451 -33.05884 -31.54086 -29.82439 -28.50853 -27.92206 -27.31405 -25.75063 -24.55871 -22.06743 -21.46659 -20.87035 -20.43971 -20.16084 -19.44822 -17.82750 -17.19670 -16.52135 -15.90536 -15.68654 -15.53027 -15.12373 -14.86586 -14.52846 -14.21311 -14.12999 -13.88374 -13.77688 -13.21687 -13.10349 -12.69276 -12.57017 -12.47341 -12.22671 -12.01952 -11.48930 -11.34351 -11.33604 -11.27575 -11.20586 -10.94164 -10.80799 -10.53717 -10.06445 -9.87322 -9.82074 -9.53244 -9.18636 -9.12503 -8.61847 -7.58372 -7.03295 -6.54083 -6.17168 -4.05379 2.36878 2.51348 2.68300 3.03271 3.11809 3.13067 3.28997 3.75517 3.86357 4.01651 4.20424 4.29504 4.41111 4.57442 4.60554 4.69269 4.90604 5.01678 5.05458 5.12521 5.47114 5.50651 5.56532 5.70317 5.76481 5.91911 5.98474 6.05566 6.11587 6.41206 6.56060 6.64643 6.73570 6.82113 6.95147 7.08681 7.13144 7.18475 7.19674 7.43466 7.47279 7.77946 7.82623 8.08708 8.24548 8.31375 8.44586 8.65624 8.97754 9.08374 9.18422 10.47373 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.005517 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.837341 B = 5073.952631 C = 6778.064347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.430 4.430 8 H 0.065 0.935 9 C 0.033 3.967 10 C -0.087 4.087 11 N -0.588 5.588 12 H 0.394 0.606 13 C 0.117 3.883 14 C -0.199 4.199 15 C -0.072 4.072 16 C -0.268 4.268 17 C 0.269 3.731 18 N -0.727 5.727 19 C 0.377 3.623 20 C -0.163 4.163 21 C 0.053 3.947 22 N -0.673 5.673 23 C 0.070 3.930 24 H 0.134 0.866 25 C -0.178 4.178 26 C 0.527 3.473 27 O -0.533 6.533 28 N -0.723 5.723 29 C -0.178 4.178 30 H 0.272 0.728 31 H 0.175 0.825 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.414 0.586 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.342 0.658 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -4.807 -0.365 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.148 4.148 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.463 4.463 8 H 0.082 0.918 9 C 0.028 3.972 10 C -0.211 4.211 11 N -0.188 5.188 12 H 0.227 0.773 13 C 0.004 3.996 14 C -0.222 4.222 15 C -0.092 4.092 16 C -0.293 4.293 17 C 0.168 3.832 18 N -0.364 5.364 19 C 0.202 3.798 20 C -0.203 4.203 21 C -0.077 4.077 22 N -0.303 5.303 23 C -0.042 4.042 24 H 0.152 0.848 25 C -0.220 4.220 26 C 0.313 3.687 27 O -0.409 6.409 28 N -0.382 5.382 29 C -0.188 4.188 30 H 0.083 0.917 31 H 0.191 0.809 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.160 0.840 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 10.432 -4.950 -0.205 11.549 hybrid contribution -0.156 1.224 -1.160 1.694 sum 10.276 -3.726 -1.365 11.015 Atomic orbital electron populations 1.69672 1.06956 1.27899 1.41657 1.25576 0.94871 1.00266 0.94108 0.86327 0.80137 0.81578 0.78670 1.20090 1.20570 1.19006 1.18449 0.92787 0.89217 1.45883 0.91754 1.17870 0.91886 0.89269 0.98174 1.22642 1.00045 0.82492 1.15931 1.41473 1.10832 1.08361 1.58111 0.77285 1.17906 0.88112 0.92213 1.01341 1.19592 0.98159 0.92242 1.12181 1.20141 0.92335 0.97637 0.99055 1.20169 0.99942 0.91754 1.17477 1.17067 0.85446 0.88569 0.92119 1.45064 1.10613 1.12761 1.67992 1.20862 0.85879 0.92117 0.80985 1.23162 0.97663 0.99618 0.99886 1.22579 0.99760 0.89794 0.95554 1.61274 1.06412 1.02896 1.59702 1.23724 0.93771 0.93596 0.93113 0.84842 1.23154 1.00807 1.03771 0.94255 1.20917 0.79003 0.80115 0.88657 1.90740 1.64369 1.51893 1.33879 1.46945 1.51522 1.24010 1.15674 1.18959 0.92118 0.95978 1.11763 0.91715 0.80851 0.88496 0.87830 0.87774 0.74479 0.89802 0.88991 0.91151 0.89668 0.84018 0.87649 0.87291 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.08 10.74 55.54 0.60 -20.49 16 2 C 0.06 1.54 5.47 -17.34 -0.09 1.44 16 3 Si 0.91 18.47 29.56 -169.99 -5.02 13.45 16 4 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -10.74 8.85 -38.03 -0.34 -11.08 16 8 H 0.06 1.50 5.59 -52.49 -0.29 1.21 16 9 C 0.03 0.84 6.00 -104.81 -0.63 0.22 16 10 C -0.09 -2.14 10.78 -15.59 -0.17 -2.31 16 11 N -0.59 -12.58 5.99 -9.80 -0.06 -12.64 16 12 H 0.39 6.96 8.96 -40.82 -0.37 6.60 16 13 C 0.12 2.59 7.23 -83.92 -0.61 1.98 16 14 C -0.20 -3.87 10.07 -39.33 -0.40 -4.26 16 15 C -0.07 -1.32 10.00 -39.59 -0.40 -1.72 16 16 C -0.27 -5.00 7.62 -39.32 -0.30 -5.30 16 17 C 0.27 5.46 6.32 -83.66 -0.53 4.93 16 18 N -0.73 -12.63 5.49 -47.68 -0.26 -12.89 16 19 C 0.38 5.12 1.11 -190.61 -0.21 4.91 16 20 C -0.16 -1.78 6.36 -25.75 -0.16 -1.94 16 21 C 0.05 0.52 7.56 -3.12 -0.02 0.50 16 22 N -0.67 -7.02 7.26 -103.69 -0.75 -7.78 16 23 C 0.07 0.86 3.43 -65.64 -0.23 0.63 16 24 H 0.13 1.97 6.16 -51.92 -0.32 1.65 16 25 C -0.18 -1.95 5.95 -26.78 -0.16 -2.11 16 26 C 0.53 7.65 7.13 -10.39 -0.07 7.58 16 27 O -0.53 -9.64 18.03 5.56 0.10 -9.54 16 28 N -0.72 -10.18 4.81 -49.13 -0.24 -10.41 16 29 C -0.18 -4.17 6.27 -104.75 -0.66 -4.82 16 30 H 0.27 6.44 8.30 -40.82 -0.34 6.10 16 31 H 0.17 4.40 6.28 -52.49 -0.33 4.07 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.75 3.31 -52.49 -0.17 1.58 16 35 H 0.41 7.66 5.35 -40.82 -0.22 7.44 16 36 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.09 1.04 7.84 -51.93 -0.41 0.63 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.34 2.72 7.70 -39.29 -0.30 2.41 16 41 H 0.11 0.89 7.31 -51.93 -0.38 0.51 16 42 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.41 5.95 8.96 -40.82 -0.37 5.58 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -29.66 337.75 -10.34 -40.00 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -4.82 Total: 26.56 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.97 Total: -11.36 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.71 Total: -64.20 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.10 Total: -9.54 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.66 -10.34 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163253930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.806 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds