Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35617 * 116.99762 * 2 1 4 4 C 1.39150 * 120.50332 * 359.97438 * 3 2 1 5 5 C 1.38311 * 118.62436 * 180.02562 * 4 3 2 6 6 C 1.39942 * 119.59695 * 0.02562 * 5 4 3 7 7 N 1.38905 * 119.49325 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00324 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.67124 * 56.78122 * 9 8 7 11 11 C 1.54714 * 110.74802 * 179.97438 * 9 8 7 12 12 C 1.51644 * 101.92473 * 143.78724 * 11 9 8 13 13 C 1.37747 * 132.17282 * 164.46003 * 12 11 9 14 14 C 1.38348 * 119.97817 * 180.47089 * 13 12 11 15 15 C 1.38282 * 119.76731 * 359.97438 * 14 13 12 16 16 C 1.37928 * 120.35271 * 359.86582 * 15 14 13 17 17 C 1.38881 * 107.04376 * 344.63114 * 12 11 9 18 18 O 1.36131 * 111.23412 * 358.90118 * 17 12 11 19 19 N 1.31862 * 121.00952 * 0.25476 * 6 5 4 20 20 C 1.33832 * 121.46942 * 359.48293 * 19 6 5 21 21 C 1.40917 * 119.84605 * 180.24192 * 20 19 6 22 22 H 1.08000 * 119.99523 * 180.26644 * 21 20 19 23 23 C 1.40023 * 120.00040 * 0.27181 * 21 20 19 24 24 N 1.30773 * 120.00275 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99657 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47014 * 89.99805 * 25 23 21 27 27 H 1.48499 * 109.47178 * 209.99738 * 25 23 21 28 28 H 1.48506 * 109.47407 * 330.00078 * 25 23 21 29 29 H 1.08998 * 109.46932 * 300.00080 * 1 2 3 30 30 H 1.09000 * 109.47044 * 59.99859 * 1 2 3 31 31 H 1.08996 * 109.46799 * 180.02562 * 1 2 3 32 32 H 1.07992 * 120.69005 * 0.04605 * 4 3 2 33 33 H 1.08005 * 120.20293 * 179.97438 * 5 4 3 34 34 H 0.97003 * 119.99675 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47459 * 60.00243 * 8 7 6 36 36 H 1.08998 * 109.47174 * 300.00026 * 8 7 6 37 37 H 1.08997 * 110.93610 * 25.62975 * 11 9 8 38 38 H 1.08991 * 110.96934 * 261.95714 * 11 9 8 39 39 H 1.08002 * 120.00823 * 0.45135 * 13 12 11 40 40 H 1.08004 * 120.10961 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.82309 * 179.88127 * 15 14 13 42 42 H 1.08007 * 119.87843 * 180.27498 * 16 15 14 43 43 H 0.97002 * 120.00145 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3643 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0026 8 6 3.2735 6.0810 -0.0038 9 6 4.2427 7.2649 -0.0055 10 1 4.9185 7.2078 -0.8588 11 6 3.4704 8.6055 -0.0073 12 6 4.3513 9.4758 0.8680 13 6 4.4060 10.8387 1.0599 14 6 5.3361 11.3774 1.9310 15 6 6.2078 10.5431 2.6065 16 6 6.1526 9.1778 2.4184 17 6 5.2179 8.6273 1.5447 18 8 4.9813 7.3250 1.2267 19 7 4.0578 2.4892 -0.0066 20 6 3.4544 1.2946 -0.0011 21 6 4.2292 0.1176 -0.0016 22 1 3.7448 -0.8477 -0.0015 23 6 5.6270 0.1995 -0.0021 24 7 6.2136 1.3683 -0.0026 25 14 6.6540 -1.3609 -0.0020 26 1 6.9256 -1.7748 -1.4021 27 1 7.9392 -1.1076 0.6974 28 1 5.9136 -2.4409 0.6986 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2177 2.3479 -0.0002 33 1 1.4100 4.5197 -0.0019 34 1 5.0027 4.8490 -0.0034 35 1 2.6458 6.1262 0.8861 36 1 2.6458 6.1246 -0.8938 37 1 2.4807 8.4854 0.4332 38 1 3.3991 9.0131 -1.0156 39 1 3.7232 11.4866 0.5303 40 1 5.3812 12.4458 2.0827 41 1 6.9355 10.9628 3.2853 42 1 6.8341 8.5330 2.9534 43 1 7.1819 1.4250 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163862250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = 5.336805 kcal Electronic energy + Delta-G solvation = -26374.302233 eV Core-core repulsion = 22578.584839 eV Total energy + Delta-G solvation = -3795.717393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23001 -38.78754 -37.71637 -36.83256 -34.83140 -33.35225 -32.65019 -30.30960 -30.20392 -30.11313 -28.37463 -26.45848 -25.53397 -24.74792 -22.65069 -21.99268 -21.73704 -21.13314 -20.29490 -17.61379 -17.42601 -16.92639 -16.61848 -16.39220 -16.05486 -15.26842 -14.90254 -14.61030 -14.58759 -14.38180 -13.92939 -13.82393 -13.32739 -13.27211 -13.14652 -12.86756 -12.72946 -12.44501 -12.07220 -11.95467 -11.88880 -11.69798 -11.43797 -11.18789 -11.14695 -10.94174 -10.81224 -10.52572 -10.41078 -10.39025 -9.76380 -9.42366 -9.05327 -8.43102 -8.23404 -7.97507 -7.63140 -6.33818 -6.25664 -4.32319 1.13198 1.24618 2.85940 3.11791 3.15113 3.17483 3.19807 3.31125 3.57049 3.99279 4.03058 4.25564 4.55454 4.65887 4.77219 4.84720 4.87833 4.89564 5.07957 5.11103 5.23993 5.43928 5.49112 5.57744 5.76713 5.83081 5.83857 5.87389 5.98573 6.00517 6.09022 6.12148 6.16564 6.28431 6.31555 6.41833 6.50991 6.71888 6.83860 7.13457 7.24248 7.32441 7.51493 7.72174 8.23890 8.31905 8.46735 8.71666 8.83478 9.21087 10.21910 10.39387 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.002846 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.841522 B = 9836.876250 C =11452.104719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.349 4.349 6 C 0.395 3.605 7 N -0.736 5.736 8 C 0.150 3.850 9 C 0.072 3.928 10 H 0.093 0.907 11 C -0.101 4.101 12 C -0.177 4.177 13 C -0.071 4.071 14 C -0.156 4.156 15 C -0.086 4.086 16 C -0.142 4.142 17 C 0.113 3.887 18 O -0.289 6.289 19 N -0.513 5.513 20 C 0.289 3.711 21 C -0.412 4.412 22 H 0.091 0.909 23 C 0.067 3.933 24 N -0.712 5.712 25 Si 0.908 3.092 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.261 1.261 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.399 0.601 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 16.070 0.857 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.124 4.124 4 C -0.138 4.138 5 C -0.375 4.375 6 C 0.157 3.843 7 N -0.374 5.374 8 C 0.024 3.976 9 C 0.016 3.984 10 H 0.111 0.889 11 C -0.139 4.139 12 C -0.178 4.178 13 C -0.089 4.089 14 C -0.174 4.174 15 C -0.104 4.104 16 C -0.160 4.160 17 C 0.067 3.933 18 O -0.203 6.203 19 N -0.235 5.235 20 C 0.161 3.839 21 C -0.444 4.444 22 H 0.109 0.891 23 C -0.158 4.158 24 N -0.334 5.334 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.185 1.185 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.276 15.893 0.958 15.973 hybrid contribution -0.546 -0.259 -0.068 0.608 sum -1.821 15.634 0.890 15.765 Atomic orbital electron populations 1.22681 0.82243 1.01475 0.99625 1.85921 1.17796 1.27909 1.90912 1.20032 0.93437 0.83103 1.15852 1.20653 0.97233 0.92366 1.03561 1.20324 0.92759 0.96300 1.28142 1.18434 0.87644 0.86598 0.91603 1.43912 1.07982 1.01102 1.84413 1.21158 0.92755 0.81985 1.01743 1.23694 0.93160 0.95473 0.86074 0.88904 1.21768 0.99112 0.92558 1.00462 1.20817 0.99290 0.94602 1.03105 1.20289 0.98186 0.92740 0.97680 1.20995 0.97600 0.99788 0.99018 1.20863 0.98597 0.92203 0.98735 1.20329 0.99145 0.95110 1.01439 1.19687 0.93973 0.83905 0.95689 1.86998 1.71768 1.21737 1.39801 1.68373 1.34727 0.94945 1.25483 1.17771 0.85007 0.91034 0.90113 1.19536 0.90528 0.93118 1.41229 0.89100 1.26085 0.98776 0.97133 0.93807 1.70166 1.10212 1.24456 1.28565 0.86324 0.79076 0.82251 0.79145 1.19495 1.20269 1.18478 0.94525 0.94520 0.90206 0.88294 0.89110 0.76561 0.92041 0.90965 0.88711 0.88795 0.85927 0.85678 0.85314 0.85360 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.40 9.61 -18.55 -0.18 -7.58 16 3 C -0.08 -1.98 6.74 -38.11 -0.26 -2.24 16 4 C -0.11 -2.66 9.12 -39.22 -0.36 -3.02 16 5 C -0.35 -8.08 9.33 -38.92 -0.36 -8.44 16 6 C 0.39 9.74 7.65 -155.27 -1.19 8.55 16 7 N -0.74 -15.01 5.71 -60.36 -0.34 -15.35 16 8 C 0.15 2.31 4.56 -4.04 -0.02 2.29 16 9 C 0.07 0.95 3.65 -25.83 -0.09 0.86 16 10 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.10 -1.06 6.65 -26.52 -0.18 -1.24 16 12 C -0.18 -2.08 6.27 -104.10 -0.65 -2.73 16 13 C -0.07 -0.69 10.03 -39.72 -0.40 -1.09 16 14 C -0.16 -1.41 10.07 -39.52 -0.40 -1.81 16 15 C -0.09 -0.83 10.02 -39.68 -0.40 -1.22 16 16 C -0.14 -1.70 10.06 -39.31 -0.40 -2.09 16 17 C 0.11 1.56 7.04 -38.95 -0.27 1.28 16 18 O -0.29 -4.55 10.81 -20.16 -0.22 -4.76 16 19 N -0.51 -14.33 7.88 -10.20 -0.08 -14.41 16 20 C 0.29 8.22 6.56 -84.84 -0.56 7.66 16 21 C -0.41 -11.46 8.94 -37.90 -0.34 -11.80 16 22 H 0.09 2.46 7.31 -52.49 -0.38 2.07 16 23 C 0.07 1.75 5.50 -17.33 -0.10 1.65 16 24 N -0.71 -19.12 11.45 55.55 0.64 -18.48 16 25 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 2.01 6.43 -52.49 -0.34 1.67 16 33 H 0.09 1.84 6.67 -52.48 -0.35 1.49 16 34 H 0.40 8.35 8.59 -40.82 -0.35 7.99 16 35 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 36 H 0.07 1.02 7.92 -51.93 -0.41 0.60 16 37 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -32.30 361.43 -10.28 -42.58 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.55 Total: 10.18 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.97 Total: -11.76 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.21 Total: -48.24 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.40 Total: -12.35 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.30 -10.28 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163862250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.920 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds