Wall clock time and date at job start Tue Mar 31 2020 14:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35617 * 116.99762 * 2 1 4 4 C 1.39150 * 120.50332 * 359.97438 * 3 2 1 5 5 C 1.38311 * 118.62436 * 180.02562 * 4 3 2 6 6 C 1.39942 * 119.59695 * 0.02562 * 5 4 3 7 7 N 1.38905 * 119.49325 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00324 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.67124 * 56.78122 * 9 8 7 11 11 C 1.54714 * 110.74802 * 179.97438 * 9 8 7 12 12 C 1.51644 * 101.92473 * 143.78724 * 11 9 8 13 13 C 1.37747 * 132.17282 * 164.46003 * 12 11 9 14 14 C 1.38348 * 119.97817 * 180.47089 * 13 12 11 15 15 C 1.38282 * 119.76731 * 359.97438 * 14 13 12 16 16 C 1.37928 * 120.35271 * 359.86582 * 15 14 13 17 17 C 1.38881 * 107.04376 * 344.63114 * 12 11 9 18 18 O 1.36131 * 111.23412 * 358.90118 * 17 12 11 19 19 N 1.31862 * 121.00952 * 0.25476 * 6 5 4 20 20 C 1.33832 * 121.46942 * 359.48293 * 19 6 5 21 21 C 1.40917 * 119.84605 * 180.24192 * 20 19 6 22 22 H 1.08000 * 119.99523 * 180.26644 * 21 20 19 23 23 C 1.40023 * 120.00040 * 0.27181 * 21 20 19 24 24 N 1.30773 * 120.00275 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99657 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47014 * 89.99805 * 25 23 21 27 27 H 1.48499 * 109.47178 * 209.99738 * 25 23 21 28 28 H 1.48506 * 109.47407 * 330.00078 * 25 23 21 29 29 H 1.08998 * 109.46932 * 300.00080 * 1 2 3 30 30 H 1.09000 * 109.47044 * 59.99859 * 1 2 3 31 31 H 1.08996 * 109.46799 * 180.02562 * 1 2 3 32 32 H 1.07992 * 120.69005 * 0.04605 * 4 3 2 33 33 H 1.08005 * 120.20293 * 179.97438 * 5 4 3 34 34 H 0.97003 * 119.99675 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47459 * 60.00243 * 8 7 6 36 36 H 1.08998 * 109.47174 * 300.00026 * 8 7 6 37 37 H 1.08997 * 110.93610 * 25.62975 * 11 9 8 38 38 H 1.08991 * 110.96934 * 261.95714 * 11 9 8 39 39 H 1.08002 * 120.00823 * 0.45135 * 13 12 11 40 40 H 1.08004 * 120.10961 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.82309 * 179.88127 * 15 14 13 42 42 H 1.08007 * 119.87843 * 180.27498 * 16 15 14 43 43 H 0.97002 * 120.00145 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3643 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0026 8 6 3.2735 6.0810 -0.0038 9 6 4.2427 7.2649 -0.0055 10 1 4.9185 7.2078 -0.8588 11 6 3.4704 8.6055 -0.0073 12 6 4.3513 9.4758 0.8680 13 6 4.4060 10.8387 1.0599 14 6 5.3361 11.3774 1.9310 15 6 6.2078 10.5431 2.6065 16 6 6.1526 9.1778 2.4184 17 6 5.2179 8.6273 1.5447 18 8 4.9813 7.3250 1.2267 19 7 4.0578 2.4892 -0.0066 20 6 3.4544 1.2946 -0.0011 21 6 4.2292 0.1176 -0.0016 22 1 3.7448 -0.8477 -0.0015 23 6 5.6270 0.1995 -0.0021 24 7 6.2136 1.3683 -0.0026 25 14 6.6540 -1.3609 -0.0020 26 1 6.9256 -1.7748 -1.4021 27 1 7.9392 -1.1076 0.6974 28 1 5.9136 -2.4409 0.6986 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2177 2.3479 -0.0002 33 1 1.4100 4.5197 -0.0019 34 1 5.0027 4.8490 -0.0034 35 1 2.6458 6.1262 0.8861 36 1 2.6458 6.1246 -0.8938 37 1 2.4807 8.4854 0.4332 38 1 3.3991 9.0131 -1.0156 39 1 3.7232 11.4866 0.5303 40 1 5.3812 12.4458 2.0827 41 1 6.9355 10.9628 3.2853 42 1 6.8341 8.5330 2.9534 43 1 7.1819 1.4250 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163862250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:01 Heat of formation + Delta-G solvation = -14.288596 kcal Electronic energy + Delta-G solvation = -26375.153254 eV Core-core repulsion = 22578.584839 eV Total energy + Delta-G solvation = -3796.568415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16080 -40.60982 -38.82707 -38.33231 -36.46184 -35.08390 -33.68840 -32.17174 -31.55905 -30.95284 -29.87441 -28.01948 -27.07744 -26.24327 -23.74627 -23.29016 -22.63943 -22.58251 -21.98497 -19.33405 -18.53536 -18.41094 -18.14916 -17.69034 -17.19793 -16.63027 -16.49733 -16.21795 -16.04766 -15.38691 -15.36588 -14.87054 -14.85658 -14.37932 -14.35393 -14.09826 -14.00329 -13.90537 -13.52454 -13.28215 -13.19382 -12.90080 -12.83898 -12.69799 -12.59194 -12.36079 -12.07858 -12.01314 -11.80852 -11.69441 -11.55985 -11.27481 -10.14679 -9.91101 -9.84133 -9.57075 -9.11284 -8.25356 -8.08433 -6.32628 0.33978 0.41782 0.99504 1.27793 1.41100 1.54538 1.57910 2.17069 2.26166 2.58408 2.77322 2.91491 3.04280 3.36339 3.59210 3.83961 3.94313 3.97674 4.06940 4.20969 4.27161 4.33490 4.45993 4.49557 4.53015 4.56079 4.59373 4.64715 4.67214 4.76465 4.82309 4.91271 4.92435 4.94977 5.12703 5.32498 5.39672 5.47265 5.50636 5.55218 5.69555 5.75079 5.85690 6.24425 6.26284 6.41826 6.71971 6.83336 6.97340 7.33389 8.29892 8.49352 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.002846 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.841522 B = 9836.876250 C =11452.104719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.098 4.098 4 C -0.112 4.112 5 C -0.343 4.343 6 C 0.374 3.626 7 N -0.734 5.734 8 C 0.149 3.851 9 C 0.073 3.927 10 H 0.094 0.906 11 C -0.091 4.091 12 C -0.185 4.185 13 C -0.073 4.073 14 C -0.149 4.149 15 C -0.087 4.087 16 C -0.162 4.162 17 C 0.071 3.929 18 O -0.325 6.325 19 N -0.545 5.545 20 C 0.252 3.748 21 C -0.451 4.451 22 H 0.084 0.916 23 C 0.023 3.977 24 N -0.749 5.749 25 Si 0.986 3.014 26 H -0.262 1.262 27 H -0.267 1.267 28 H -0.259 1.259 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.392 0.608 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.122 0.878 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 18.248 0.602 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.369 4.369 6 C 0.135 3.865 7 N -0.371 5.371 8 C 0.025 3.975 9 C 0.017 3.983 10 H 0.111 0.889 11 C -0.128 4.128 12 C -0.186 4.186 13 C -0.091 4.091 14 C -0.167 4.167 15 C -0.105 4.105 16 C -0.181 4.181 17 C 0.027 3.973 18 O -0.240 6.240 19 N -0.269 5.269 20 C 0.123 3.877 21 C -0.483 4.483 22 H 0.103 0.897 23 C -0.198 4.198 24 N -0.372 5.372 25 Si 0.806 3.194 26 H -0.186 1.186 27 H -0.192 1.192 28 H -0.182 1.182 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.226 0.774 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.170 0.830 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.140 0.860 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.536 18.125 0.703 18.315 hybrid contribution -0.289 -0.751 0.055 0.806 sum -2.824 17.374 0.759 17.619 Atomic orbital electron populations 1.23031 0.79084 1.04013 1.00602 1.85856 1.21080 1.27243 1.91021 1.20076 0.93182 0.84657 1.16695 1.21046 0.98955 0.91559 1.02055 1.20716 0.92382 0.97691 1.26132 1.18887 0.88801 0.87150 0.91623 1.44122 1.07932 1.01502 1.83500 1.21390 0.93130 0.80651 1.02323 1.23676 0.93070 0.96002 0.85560 0.88853 1.21761 0.98687 0.90456 1.01903 1.21060 0.99064 0.95392 1.03049 1.20700 0.98600 0.92168 0.97642 1.21461 0.96289 1.01374 0.97564 1.21224 0.99175 0.91142 0.98934 1.20588 0.99317 0.96458 1.01746 1.20057 0.95998 0.83576 0.97716 1.86936 1.72688 1.23520 1.40873 1.68307 1.36267 0.95846 1.26476 1.18222 0.86858 0.91585 0.91042 1.19736 0.91893 0.92977 1.43688 0.89741 1.26959 0.99330 1.00721 0.92795 1.70260 1.10737 1.26666 1.29520 0.85164 0.77225 0.77561 0.79439 1.18646 1.19156 1.18247 0.93473 0.93306 0.87097 0.84822 0.85864 0.77400 0.92410 0.88916 0.87794 0.86095 0.83036 0.82392 0.82687 0.85960 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.05 16 2 O -0.34 -16.18 9.61 -89.29 -0.86 -17.04 16 3 C -0.10 -5.19 6.74 23.23 0.16 -5.03 16 4 C -0.11 -5.14 9.12 22.51 0.21 -4.93 16 5 C -0.34 -15.63 9.33 22.70 0.21 -15.42 16 6 C 0.37 18.84 7.65 133.45 1.02 19.86 16 7 N -0.73 -30.71 5.71 -344.87 -1.97 -32.68 16 8 C 0.15 4.54 4.56 86.38 0.39 4.93 16 9 C 0.07 1.91 3.65 31.18 0.11 2.02 16 10 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 11 C -0.09 -1.72 6.65 30.73 0.20 -1.52 16 12 C -0.18 -4.06 6.27 -19.53 -0.12 -4.18 16 13 C -0.07 -1.21 10.03 22.18 0.22 -0.99 16 14 C -0.15 -2.21 10.07 22.31 0.22 -1.99 16 15 C -0.09 -1.52 10.02 22.21 0.22 -1.30 16 16 C -0.16 -3.94 10.06 22.45 0.23 -3.72 16 17 C 0.07 1.99 7.04 22.68 0.16 2.15 16 18 O -0.33 -10.64 10.81 -95.04 -1.03 -11.66 16 19 N -0.55 -31.84 7.88 -186.17 -1.47 -33.31 16 20 C 0.25 14.93 6.56 40.23 0.26 15.20 16 21 C -0.45 -26.32 8.94 23.36 0.21 -26.11 16 22 H 0.08 4.82 7.31 -2.91 -0.02 4.79 16 23 C 0.02 1.27 5.50 85.28 0.47 1.73 16 24 N -0.75 -42.07 11.45 21.84 0.25 -41.82 16 25 Si 0.99 40.59 29.56 68.60 2.03 42.62 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 28 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 29 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 30 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 31 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.13 5.07 6.43 -2.91 -0.02 5.05 16 33 H 0.12 4.70 6.67 -2.91 -0.02 4.68 16 34 H 0.39 17.28 8.59 -92.71 -0.80 16.48 16 35 H 0.06 1.80 7.91 -2.39 -0.02 1.78 16 36 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 37 H 0.10 1.77 7.93 -2.39 -0.02 1.75 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -75.14 361.43 2.50 -72.64 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.25 Total: 38.48 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.29 Total: -17.23 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.19 Total: -107.81 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.88 Total: -28.70 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -75.14 2.50 -72.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163862250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.352 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds