Wall clock time and date at job start Tue Mar 31 2020 14:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34231 * 116.99730 * 2 1 4 4 O 1.20826 * 120.00394 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99325 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46758 * 180.02562 * 5 3 2 7 7 C 1.38167 * 119.57386 * 125.02022 * 6 5 3 8 8 C 1.38834 * 119.33907 * 179.97438 * 7 6 5 9 9 C 1.38353 * 118.51022 * 359.72588 * 8 7 6 10 10 C 1.39184 * 119.08549 * 0.53552 * 9 8 7 11 11 N 1.38842 * 119.70885 * 179.72793 * 10 9 8 12 12 C 1.36912 * 119.99961 * 4.72788 * 11 10 9 13 13 H 1.08001 * 119.99769 * 41.48080 * 12 11 10 14 14 C 1.38810 * 120.00326 * 221.75236 * 12 11 10 15 15 N 1.31574 * 119.99698 * 17.28662 * 14 12 11 16 16 Si 1.86799 * 120.00376 * 197.28727 * 14 12 11 17 17 H 1.48501 * 109.47328 * 89.99700 * 16 14 12 18 18 H 1.48506 * 109.47199 * 210.00072 * 16 14 12 19 19 H 1.48496 * 109.47125 * 329.99966 * 16 14 12 20 20 C 1.46499 * 120.00246 * 184.72562 * 11 10 9 21 21 C 1.50696 * 109.47213 * 274.40605 * 20 11 10 22 22 C 1.38232 * 120.00234 * 275.31677 * 21 20 11 23 23 C 1.38234 * 120.00416 * 179.76590 * 22 21 20 24 24 C 1.38243 * 119.99549 * 0.50763 * 23 22 21 25 25 C 1.38237 * 119.99927 * 359.75105 * 24 23 22 26 26 C 1.38231 * 119.99915 * 359.97438 * 25 24 23 27 27 N 1.31869 * 119.56313 * 304.99440 * 6 5 3 28 28 H 1.09003 * 109.46514 * 60.00203 * 1 2 3 29 29 H 1.08994 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47042 * 300.00304 * 1 2 3 31 31 H 1.08990 * 109.47648 * 60.00267 * 5 3 2 32 32 H 1.09000 * 109.47302 * 299.99472 * 5 3 2 33 33 H 1.07998 * 120.32580 * 359.95559 * 7 6 5 34 34 H 1.08010 * 120.74450 * 180.02562 * 8 7 6 35 35 H 1.07997 * 120.45838 * 180.28689 * 9 8 7 36 36 H 0.97002 * 119.99666 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.46800 * 34.40721 * 20 11 10 38 38 H 1.09004 * 109.47339 * 154.40272 * 20 11 10 39 39 H 1.07999 * 119.99841 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.00896 * 180.23121 * 23 22 21 41 41 H 1.07997 * 119.99959 * 179.72147 * 24 23 22 42 42 H 1.07996 * 119.99805 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.99762 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 3.9937 2.7200 0.0011 7 6 4.8480 3.1781 0.9856 8 6 5.2389 4.5103 0.9811 9 6 4.7596 5.3358 -0.0203 10 6 3.8976 4.8083 -0.9773 11 7 3.4043 5.6264 -1.9848 12 6 3.8407 6.9198 -2.0915 13 1 4.8867 7.1499 -1.9525 14 6 2.9379 7.9360 -2.3728 15 7 1.6485 7.7357 -2.2040 16 14 3.5535 9.5877 -2.9910 17 1 3.6148 9.5695 -4.4746 18 1 2.6262 10.6593 -2.5469 19 1 4.9089 9.8475 -2.4428 20 6 2.4169 5.1059 -2.9336 21 6 3.1267 4.4072 -4.0645 22 6 3.5926 5.1355 -5.1431 23 6 4.2479 4.4952 -6.1782 24 6 4.4281 3.1251 -6.1397 25 6 3.9575 2.3961 -5.0635 26 6 3.3072 3.0372 -4.0258 27 7 3.5477 3.5306 -0.9385 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9565 0.7806 -0.8891 32 1 3.9558 0.7809 0.8909 33 1 5.2077 2.5067 1.7512 34 1 5.9062 4.8925 1.7396 35 1 5.0471 6.3762 -0.0566 36 1 1.0176 8.4457 -2.4010 37 1 1.7611 4.3996 -2.4246 38 1 1.8245 5.9304 -3.3306 39 1 3.4482 6.2053 -5.1751 40 1 4.6152 5.0646 -7.0192 41 1 4.9362 2.6243 -6.9505 42 1 4.0979 1.3258 -5.0336 43 1 2.9392 2.4676 -3.1853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:19 Heat of formation + Delta-G solvation = -21.809240 kcal Electronic energy + Delta-G solvation = -27888.296286 eV Core-core repulsion = 24091.401752 eV Total energy + Delta-G solvation = -3796.894534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54178 -40.76026 -39.88108 -37.78830 -37.25277 -34.16737 -33.74885 -32.62748 -31.76367 -31.63833 -29.44435 -28.02546 -27.46309 -25.86267 -23.57824 -23.30387 -22.90122 -21.86177 -21.57005 -19.09169 -18.54217 -18.16523 -17.58687 -17.41219 -17.30085 -16.81899 -16.55163 -16.08800 -15.97090 -15.66650 -15.29019 -14.97621 -14.57046 -14.55912 -14.25691 -14.17919 -13.77094 -13.62480 -13.55295 -13.23307 -13.01797 -12.95078 -12.89066 -12.83998 -12.56960 -12.35229 -12.07142 -11.86847 -11.73541 -11.72040 -11.44412 -11.09784 -10.49842 -10.14867 -9.96359 -9.71447 -9.51717 -8.57074 -8.12981 -5.97807 0.53312 0.60064 0.65424 0.93995 1.34728 1.39031 1.41614 1.50844 1.90024 2.23815 2.83861 2.93552 3.20160 3.40945 3.60297 4.07272 4.08512 4.14327 4.17569 4.25919 4.33351 4.36401 4.39692 4.51150 4.54938 4.57572 4.71287 4.73381 4.76054 4.78038 4.84676 4.97302 5.15333 5.19358 5.25373 5.30444 5.39307 5.46237 5.50930 5.66574 5.68356 5.72181 5.93646 6.08156 6.23576 6.29748 6.70863 6.90390 7.30559 7.39539 8.02356 8.71420 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.005129 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.597005 B = 5458.130157 C = 6689.661235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.460 3.540 4 O -0.529 6.529 5 C -0.048 4.048 6 C 0.156 3.844 7 C -0.264 4.264 8 C -0.037 4.037 9 C -0.269 4.269 10 C 0.363 3.637 11 N -0.439 5.439 12 C -0.320 4.320 13 H 0.079 0.921 14 C -0.002 4.002 15 N -0.898 5.898 16 Si 0.982 3.018 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.260 1.260 20 C 0.181 3.819 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.108 4.108 27 N -0.550 5.550 28 H 0.048 0.952 29 H 0.138 0.862 30 H 0.055 0.945 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.111 0.889 36 H 0.269 0.731 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -14.689 -0.221 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.417 6.417 5 C -0.086 4.086 6 C 0.014 3.986 7 C -0.288 4.288 8 C -0.062 4.062 9 C -0.296 4.296 10 C 0.126 3.874 11 N -0.132 5.132 12 C -0.448 4.448 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.535 5.535 16 Si 0.805 3.195 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.184 1.184 20 C 0.057 3.943 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.127 4.127 27 N -0.269 5.269 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.595 -14.372 -1.077 14.854 hybrid contribution -0.097 1.939 0.537 2.015 sum 3.497 -12.433 -0.539 12.927 Atomic orbital electron populations 1.23441 0.75544 1.05452 1.01754 1.86471 1.24326 1.32612 1.84357 1.24021 0.92765 0.81058 0.71848 1.90778 1.67874 1.37786 1.45252 1.20342 0.86489 0.92686 1.09041 1.20655 0.92850 0.94319 0.90806 1.21560 1.06823 0.96976 1.03452 1.21432 0.95929 0.93358 0.95510 1.21375 1.07154 1.01253 0.99800 1.19089 0.92144 0.88586 0.87586 1.42187 1.39603 1.08648 1.22785 1.19383 0.93405 0.82109 1.49949 0.90382 1.26266 0.94924 1.02409 0.96827 1.70141 1.02761 1.35369 1.45190 0.85098 0.78510 0.77050 0.78824 1.19435 1.20825 1.18435 1.19906 0.90173 0.96213 0.87980 1.20519 0.99549 0.94710 0.95477 1.21083 0.99128 0.99186 0.94512 1.21356 0.99226 0.95689 0.98452 1.21424 1.00105 0.93689 0.98965 1.21410 0.98471 1.00872 0.93822 1.21168 0.99210 0.93689 0.98610 1.66873 1.28373 1.03290 1.28378 0.93320 0.84420 0.92634 0.84525 0.82262 0.82356 0.83243 0.87129 0.92133 0.94668 0.90782 0.88243 0.84152 0.82909 0.83651 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -9.19 10.57 -51.42 -0.54 -9.74 16 3 C 0.46 14.55 7.89 71.24 0.56 15.11 16 4 O -0.53 -22.67 15.08 21.96 0.33 -22.34 16 5 C -0.05 -1.23 6.21 29.10 0.18 -1.05 16 6 C 0.16 5.66 5.76 42.54 0.25 5.91 16 7 C -0.26 -8.50 9.71 22.40 0.22 -8.28 16 8 C -0.04 -1.34 10.17 22.44 0.23 -1.11 16 9 C -0.27 -12.43 9.29 22.52 0.21 -12.22 16 10 C 0.36 18.46 7.31 133.09 0.97 19.43 16 11 N -0.44 -23.74 2.58 -521.98 -1.35 -25.08 16 12 C -0.32 -17.49 8.21 84.04 0.69 -16.80 16 13 H 0.08 4.23 7.18 -2.91 -0.02 4.21 16 14 C 0.00 -0.10 4.98 84.87 0.42 0.32 16 15 N -0.90 -51.41 11.59 21.65 0.25 -51.16 16 16 Si 0.98 42.07 29.59 68.60 2.03 44.10 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 C 0.18 9.55 4.99 85.63 0.43 9.98 16 21 C -0.10 -4.56 5.44 -19.87 -0.11 -4.66 16 22 C -0.12 -4.99 9.72 22.27 0.22 -4.77 16 23 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 26 C -0.11 -4.26 9.27 22.27 0.21 -4.05 16 27 N -0.55 -25.07 6.96 -181.30 -1.26 -26.34 16 28 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 29 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.16 2.54 7.86 -2.39 -0.02 2.52 16 33 H 0.16 3.56 7.94 -2.91 -0.02 3.54 16 34 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.11 5.30 6.64 -2.91 -0.02 5.28 16 36 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.03 1.98 7.51 -2.39 -0.02 1.96 16 38 H 0.07 4.23 5.73 -2.38 -0.01 4.22 16 39 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.11 4.60 7.33 -2.91 -0.02 4.58 16 Total: -1.00 -74.67 368.67 6.82 -67.85 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 1.02 Total: 34.08 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 6.34 Total: -11.37 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -2.36 Total: -102.58 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.21 Total: -32.08 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -74.67 6.82 -67.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds