Wall clock time and date at job start Tue Mar 31 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99818 * 2 1 4 4 O 1.20826 * 120.00366 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99896 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47193 * 180.02562 * 5 3 2 7 7 C 1.38241 * 120.00449 * 89.99931 * 6 5 3 8 8 C 1.38227 * 120.00029 * 180.02562 * 7 6 5 9 9 C 1.38231 * 120.00410 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00465 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47348 * 89.99641 * 10 9 8 12 12 C 1.39716 * 120.00076 * 180.02562 * 11 10 9 13 13 C 1.39335 * 120.36138 * 359.97438 * 12 11 10 14 14 N 1.31987 * 121.20642 * 179.97438 * 13 12 11 15 15 C 1.31497 * 122.05573 * 0.02562 * 14 13 12 16 16 C 1.40758 * 120.56912 * 0.02562 * 15 14 13 17 17 C 1.41429 * 120.62408 * 179.97438 * 16 15 14 18 18 H 1.07990 * 119.99842 * 23.47042 * 17 16 15 19 19 C 1.39934 * 119.99504 * 203.47623 * 17 16 15 20 20 N 1.30832 * 120.00377 * 17.52937 * 19 17 16 21 21 Si 1.86799 * 119.99599 * 197.52599 * 19 17 16 22 22 H 1.48500 * 109.46985 * 89.99868 * 21 19 17 23 23 H 1.48503 * 109.47178 * 210.00174 * 21 19 17 24 24 H 1.48505 * 109.47095 * 330.00188 * 21 19 17 25 25 C 1.38657 * 120.36607 * 179.97438 * 12 11 10 26 26 C 1.38239 * 119.99901 * 0.25001 * 9 8 7 27 27 C 1.38236 * 119.99841 * 359.50100 * 26 9 8 28 28 H 1.09003 * 109.47245 * 299.99684 * 1 2 3 29 29 H 1.09000 * 109.47225 * 59.99994 * 1 2 3 30 30 H 1.09004 * 109.47246 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47294 * 60.00093 * 5 3 2 32 32 H 1.09005 * 109.46594 * 300.00146 * 5 3 2 33 33 H 1.07995 * 119.99512 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.99499 * 179.97438 * 8 7 6 35 35 H 1.09007 * 109.46843 * 329.99938 * 10 9 8 36 36 H 1.08999 * 109.47351 * 209.99980 * 10 9 8 37 37 H 0.96995 * 119.99813 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.39915 * 359.96070 * 13 12 11 39 39 H 1.08007 * 119.71283 * 179.97438 * 15 14 13 40 40 H 0.96995 * 119.99492 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.92390 * 0.02562 * 25 12 11 42 42 H 1.07996 * 119.99860 * 179.72499 * 26 9 8 43 43 H 1.07998 * 120.00321 * 180.22658 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7200 0.0002 7 6 4.1901 3.3821 1.1977 8 6 4.5815 4.7078 1.1983 9 6 4.7769 5.3714 0.0015 10 6 5.2031 6.8169 0.0021 11 7 6.6661 6.8948 0.0022 12 6 7.2994 8.1401 0.0033 13 6 6.5470 9.3129 0.0038 14 7 7.1278 10.4981 0.0053 15 6 8.4357 10.6343 0.0060 16 6 9.2733 9.5030 0.0046 17 6 10.6801 9.6482 0.0048 18 1 11.1291 10.5565 0.3784 19 6 11.4901 8.6149 -0.4794 20 7 10.9749 7.6789 -1.2344 21 14 13.3069 8.5721 -0.0475 22 1 13.4996 7.8005 1.2065 23 1 14.0624 7.9232 -1.1491 24 1 13.8032 9.9587 0.1433 25 6 8.6835 8.2227 0.0040 26 6 4.5760 4.7107 -1.1960 27 6 4.1895 3.3834 -1.1967 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7805 0.8892 33 1 4.0369 2.8638 2.1327 34 1 4.7346 5.2252 2.1339 35 1 4.8130 7.3103 0.8924 36 1 4.8130 7.3111 -0.8876 37 1 7.1950 6.0817 0.0016 38 1 5.4687 9.2510 0.0027 39 1 8.8710 11.6228 0.0069 40 1 11.5364 6.9625 -1.5696 41 1 9.2927 7.3309 0.0032 42 1 4.7244 5.2304 -2.1310 43 1 4.0361 2.8661 -2.1322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168567929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:14 Heat of formation + Delta-G solvation = -37.504270 kcal Electronic energy + Delta-G solvation = -25469.003791 eV Core-core repulsion = 21671.428669 eV Total energy + Delta-G solvation = -3797.575122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89232 -39.49869 -38.31385 -36.85133 -35.46957 -33.94628 -33.11444 -31.02607 -30.38688 -29.89151 -28.26214 -27.02798 -25.62113 -24.46192 -22.84179 -22.11273 -21.53535 -20.66866 -20.37319 -17.98629 -17.25997 -17.09332 -16.93457 -16.48522 -15.60191 -15.59066 -15.33543 -15.12403 -14.80536 -14.50625 -13.98855 -13.94272 -13.56106 -13.42676 -13.19784 -13.09275 -12.66471 -12.51600 -12.43729 -12.22724 -11.99996 -11.60402 -11.46071 -11.18872 -11.18025 -11.08559 -11.07413 -10.93058 -10.82327 -10.52169 -9.90379 -9.47395 -9.29766 -8.97447 -8.76984 -8.02856 -7.72909 -6.82522 -6.36248 -4.44309 1.06740 1.35531 1.87487 2.41579 2.76216 3.04849 3.08691 3.15160 3.27439 3.61969 3.89534 4.25009 4.44774 4.54731 4.62296 4.67816 4.71618 4.79126 4.85368 4.90747 4.93103 5.08698 5.13777 5.39282 5.46029 5.70596 5.76737 5.82294 5.95961 6.03333 6.03870 6.17196 6.28919 6.38376 6.59570 6.63103 6.68915 6.89432 6.92403 7.12231 7.19160 7.40744 7.60290 7.75000 7.99559 8.22688 8.48327 8.64666 8.78812 8.90042 9.78875 10.12594 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002125 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.182558 B =13171.826093 C =14162.156184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.494 6.494 5 C -0.070 4.070 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.100 4.100 9 C -0.087 4.087 10 C 0.173 3.827 11 N -0.750 5.750 12 C 0.175 3.825 13 C -0.098 4.098 14 N -0.446 5.446 15 C -0.052 4.052 16 C 0.095 3.905 17 C -0.451 4.451 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.787 5.787 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.209 4.209 26 C -0.099 4.099 27 C -0.105 4.105 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.391 0.609 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.280 0.720 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.818 -18.569 1.721 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.380 6.380 5 C -0.108 4.108 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.118 4.118 9 C -0.087 4.087 10 C 0.048 3.952 11 N -0.384 5.384 12 C 0.074 3.926 13 C -0.257 4.257 14 N -0.153 5.153 15 C -0.217 4.217 16 C 0.090 3.910 17 C -0.482 4.482 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.734 3.266 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.240 4.240 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.751 -17.672 1.573 23.073 hybrid contribution 1.311 -1.241 0.043 1.805 sum -13.440 -18.913 1.615 23.258 Atomic orbital electron populations 1.23268 0.76230 1.03670 1.02671 1.86500 1.23547 1.33593 1.84384 1.23769 0.92013 0.81379 0.72789 1.90721 1.67008 1.36223 1.44068 1.20297 0.87714 0.96021 1.06742 1.19193 1.01452 0.93701 0.94047 1.20927 0.99550 0.94791 0.97055 1.21076 0.98554 0.94236 0.97970 1.20079 0.99150 0.96253 0.93253 1.20007 0.82930 0.90853 1.01401 1.44333 1.03245 1.05445 1.85398 1.18682 0.92794 0.85279 0.95886 1.21233 0.97270 0.86943 1.20301 1.66826 1.13489 1.26324 1.08627 1.22327 0.88301 0.97436 1.13608 1.18269 0.94044 0.91207 0.87473 1.19556 0.90827 1.01768 1.36005 0.89979 1.25952 1.01427 0.94445 0.92443 1.69840 1.38316 1.10493 1.22581 0.86287 0.81573 0.79736 0.78997 1.19283 1.20333 1.18459 1.21081 0.90374 0.98884 1.13628 1.21097 0.98375 0.94232 0.98021 1.20939 0.99486 0.94761 0.97083 0.91854 0.91856 0.88074 0.86682 0.86702 0.86160 0.85619 0.92195 0.92176 0.77512 0.86804 0.85971 0.90893 0.85718 0.85564 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.03 10.57 -39.25 -0.41 -3.44 16 3 C 0.46 4.43 7.95 36.01 0.29 4.71 16 4 O -0.49 -6.49 15.78 -18.75 -0.30 -6.79 16 5 C -0.07 -0.52 5.94 -29.03 -0.17 -0.69 16 6 C -0.08 -0.87 4.37 -104.62 -0.46 -1.33 16 7 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 8 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 9 C -0.09 -1.17 5.25 -104.62 -0.55 -1.72 16 10 C 0.17 2.67 5.05 -5.19 -0.03 2.65 16 11 N -0.75 -14.02 5.73 -59.74 -0.34 -14.36 16 12 C 0.17 4.06 6.66 -83.70 -0.56 3.51 16 13 C -0.10 -2.35 10.49 -17.08 -0.18 -2.52 16 14 N -0.45 -11.44 10.33 -12.37 -0.13 -11.57 16 15 C -0.05 -1.36 10.97 -16.74 -0.18 -1.54 16 16 C 0.10 2.56 5.59 -106.70 -0.60 1.97 16 17 C -0.45 -11.83 9.08 -37.73 -0.34 -12.17 16 18 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 19 C 0.08 1.87 5.18 -17.34 -0.09 1.78 16 20 N -0.79 -19.95 10.92 55.55 0.61 -19.34 16 21 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.21 -5.40 8.67 -38.39 -0.33 -5.73 16 26 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 27 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.12 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.11 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 36 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 37 H 0.39 7.06 8.48 -40.82 -0.35 6.71 16 38 H 0.11 2.44 6.73 -52.48 -0.35 2.09 16 39 H 0.12 2.97 8.06 -52.48 -0.42 2.55 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.13 3.28 6.19 -52.49 -0.32 2.96 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -31.55 373.08 -9.27 -40.82 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.62 Total: 11.90 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -3.67 Total: -16.13 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.14 Total: -45.27 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.71 Total: -10.23 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.55 -9.27 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168567929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.316 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds