Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99818 * 2 1 4 4 O 1.20826 * 120.00366 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99896 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47193 * 180.02562 * 5 3 2 7 7 C 1.38241 * 120.00449 * 89.99931 * 6 5 3 8 8 C 1.38227 * 120.00029 * 180.02562 * 7 6 5 9 9 C 1.38231 * 120.00410 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00465 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47348 * 89.99641 * 10 9 8 12 12 C 1.39716 * 120.00076 * 180.02562 * 11 10 9 13 13 C 1.39335 * 120.36138 * 359.97438 * 12 11 10 14 14 N 1.31987 * 121.20642 * 179.97438 * 13 12 11 15 15 C 1.31497 * 122.05573 * 0.02562 * 14 13 12 16 16 C 1.40758 * 120.56912 * 0.02562 * 15 14 13 17 17 C 1.41429 * 120.62408 * 179.97438 * 16 15 14 18 18 H 1.07990 * 119.99842 * 23.47042 * 17 16 15 19 19 C 1.39934 * 119.99504 * 203.47623 * 17 16 15 20 20 N 1.30832 * 120.00377 * 17.52937 * 19 17 16 21 21 Si 1.86799 * 119.99599 * 197.52599 * 19 17 16 22 22 H 1.48500 * 109.46985 * 89.99868 * 21 19 17 23 23 H 1.48503 * 109.47178 * 210.00174 * 21 19 17 24 24 H 1.48505 * 109.47095 * 330.00188 * 21 19 17 25 25 C 1.38657 * 120.36607 * 179.97438 * 12 11 10 26 26 C 1.38239 * 119.99901 * 0.25001 * 9 8 7 27 27 C 1.38236 * 119.99841 * 359.50100 * 26 9 8 28 28 H 1.09003 * 109.47245 * 299.99684 * 1 2 3 29 29 H 1.09000 * 109.47225 * 59.99994 * 1 2 3 30 30 H 1.09004 * 109.47246 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47294 * 60.00093 * 5 3 2 32 32 H 1.09005 * 109.46594 * 300.00146 * 5 3 2 33 33 H 1.07995 * 119.99512 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.99499 * 179.97438 * 8 7 6 35 35 H 1.09007 * 109.46843 * 329.99938 * 10 9 8 36 36 H 1.08999 * 109.47351 * 209.99980 * 10 9 8 37 37 H 0.96995 * 119.99813 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.39915 * 359.96070 * 13 12 11 39 39 H 1.08007 * 119.71283 * 179.97438 * 15 14 13 40 40 H 0.96995 * 119.99492 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.92390 * 0.02562 * 25 12 11 42 42 H 1.07996 * 119.99860 * 179.72499 * 26 9 8 43 43 H 1.07998 * 120.00321 * 180.22658 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7200 0.0002 7 6 4.1901 3.3821 1.1977 8 6 4.5815 4.7078 1.1983 9 6 4.7769 5.3714 0.0015 10 6 5.2031 6.8169 0.0021 11 7 6.6661 6.8948 0.0022 12 6 7.2994 8.1401 0.0033 13 6 6.5470 9.3129 0.0038 14 7 7.1278 10.4981 0.0053 15 6 8.4357 10.6343 0.0060 16 6 9.2733 9.5030 0.0046 17 6 10.6801 9.6482 0.0048 18 1 11.1291 10.5565 0.3784 19 6 11.4901 8.6149 -0.4794 20 7 10.9749 7.6789 -1.2344 21 14 13.3069 8.5721 -0.0475 22 1 13.4996 7.8005 1.2065 23 1 14.0624 7.9232 -1.1491 24 1 13.8032 9.9587 0.1433 25 6 8.6835 8.2227 0.0040 26 6 4.5760 4.7107 -1.1960 27 6 4.1895 3.3834 -1.1967 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7805 0.8892 33 1 4.0369 2.8638 2.1327 34 1 4.7346 5.2252 2.1339 35 1 4.8130 7.3103 0.8924 36 1 4.8130 7.3111 -0.8876 37 1 7.1950 6.0817 0.0016 38 1 5.4687 9.2510 0.0027 39 1 8.8710 11.6228 0.0069 40 1 11.5364 6.9625 -1.5696 41 1 9.2927 7.3309 0.0032 42 1 4.7244 5.2304 -2.1310 43 1 4.0361 2.8661 -2.1322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168567929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = -54.903516 kcal Electronic energy + Delta-G solvation = -25469.758279 eV Core-core repulsion = 21671.428669 eV Total energy + Delta-G solvation = -3798.329610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62262 -40.54367 -40.02793 -37.62235 -36.88791 -35.82002 -34.19726 -32.22565 -31.90715 -31.17636 -29.31733 -27.99317 -27.51094 -25.68038 -23.77757 -23.72823 -22.71545 -22.24966 -21.36579 -19.14745 -18.67479 -18.10297 -17.65245 -17.61616 -17.26717 -16.83780 -16.58364 -16.50565 -16.22069 -15.80131 -15.09209 -14.87783 -14.68616 -14.58364 -14.49670 -14.29725 -13.80617 -13.72447 -13.46007 -13.37255 -13.18775 -13.09641 -12.97197 -12.89629 -12.65123 -12.18137 -12.10176 -11.95455 -11.80780 -11.73931 -11.60381 -11.18685 -11.13196 -10.00595 -9.86765 -9.72023 -9.68465 -8.68749 -8.11936 -6.43316 0.16248 0.46224 0.93811 1.17390 1.21112 1.40630 1.54072 1.56231 1.79336 2.20972 2.59882 2.77479 3.07262 3.52461 3.78420 3.79125 3.83664 4.01582 4.07180 4.17249 4.27581 4.30819 4.32128 4.47719 4.53451 4.58714 4.62793 4.67202 4.71464 4.76615 4.84721 4.97699 4.99941 5.11550 5.18523 5.29807 5.36959 5.40131 5.53423 5.65273 5.70786 5.87162 6.01138 6.01861 6.34424 6.72338 6.73435 6.79405 6.83897 7.05703 7.81594 8.28539 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002125 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.182558 B =13171.826093 C =14162.156184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.068 4.068 6 C -0.081 4.081 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.104 4.104 10 C 0.175 3.825 11 N -0.738 5.738 12 C 0.186 3.814 13 C -0.108 4.108 14 N -0.454 5.454 15 C -0.079 4.079 16 C 0.072 3.928 17 C -0.482 4.482 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.814 5.814 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.234 4.234 26 C -0.111 4.111 27 C -0.111 4.111 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.290 0.710 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -21.241 1.965 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.426 6.426 5 C -0.104 4.104 6 C -0.081 4.081 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.104 4.104 10 C 0.051 3.949 11 N -0.371 5.371 12 C 0.082 3.918 13 C -0.268 4.268 14 N -0.162 5.162 15 C -0.243 4.243 16 C 0.066 3.934 17 C -0.512 4.512 18 H 0.102 0.898 19 C -0.180 4.180 20 N -0.438 5.438 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.180 1.180 25 C -0.265 4.265 26 C -0.130 4.130 27 C -0.129 4.129 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.745 -20.382 1.812 25.221 hybrid contribution 1.128 -0.559 -0.061 1.260 sum -13.617 -20.941 1.751 25.040 Atomic orbital electron populations 1.23513 0.75068 1.05613 1.02297 1.86498 1.24738 1.32835 1.83865 1.24151 0.92739 0.81059 0.71451 1.90715 1.68062 1.37545 1.46287 1.20423 0.86245 0.94342 1.09418 1.19547 0.99849 0.95255 0.93492 1.21243 0.98793 0.94306 0.98445 1.21208 0.98830 0.95119 0.97666 1.19891 1.01130 0.95130 0.94246 1.20086 0.80603 0.92869 1.01353 1.44425 1.04806 1.03980 1.83854 1.18692 0.92182 0.86922 0.93993 1.21640 0.98433 0.86692 1.20008 1.66816 1.13366 1.27307 1.08665 1.22453 0.88646 0.97748 1.15475 1.18601 0.94907 0.91931 0.87915 1.19837 0.91146 1.02921 1.37272 0.89811 1.26833 1.06135 0.93457 0.91573 1.69883 1.40378 1.10931 1.22652 0.85130 0.75303 0.79911 0.78943 1.18651 1.19197 1.18027 1.21052 0.91458 0.98235 1.15771 1.21207 0.98919 0.95177 0.97690 1.21234 0.98876 0.94249 0.98493 0.92248 0.92295 0.85007 0.84024 0.83930 0.83910 0.85323 0.91908 0.92315 0.77101 0.84437 0.85330 0.89944 0.86737 0.85674 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.18 10.57 -51.39 -0.54 -5.72 16 3 C 0.46 7.88 7.95 71.24 0.57 8.45 16 4 O -0.54 -13.47 15.78 21.96 0.35 -13.12 16 5 C -0.07 -0.77 5.94 29.10 0.17 -0.60 16 6 C -0.08 -1.49 4.37 -19.86 -0.09 -1.58 16 7 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 8 C -0.11 -2.60 9.70 22.27 0.22 -2.38 16 9 C -0.10 -2.73 5.25 -19.87 -0.10 -2.83 16 10 C 0.17 5.36 5.05 85.63 0.43 5.79 16 11 N -0.74 -27.66 5.73 -342.93 -1.96 -29.62 16 12 C 0.19 8.77 6.66 38.25 0.25 9.02 16 13 C -0.11 -5.17 10.49 84.93 0.89 -4.28 16 14 N -0.45 -23.73 10.33 -193.04 -1.99 -25.73 16 15 C -0.08 -4.28 10.97 85.36 0.94 -3.34 16 16 C 0.07 3.98 5.59 -21.21 -0.12 3.86 16 17 C -0.48 -25.89 9.08 23.47 0.21 -25.67 16 18 H 0.08 4.30 7.90 -2.92 -0.02 4.27 16 19 C 0.04 1.80 5.18 85.25 0.44 2.24 16 20 N -0.81 -41.56 10.92 21.82 0.24 -41.33 16 21 Si 0.99 37.22 29.59 68.60 2.03 39.25 16 22 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.23 -12.43 8.67 23.04 0.20 -12.23 16 26 C -0.11 -2.72 9.70 22.27 0.22 -2.50 16 27 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.14 0.92 8.09 -2.39 -0.02 0.90 16 32 H 0.14 0.89 8.09 -2.38 -0.02 0.88 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.06 1.90 7.90 -2.38 -0.02 1.88 16 36 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 37 H 0.39 14.29 8.48 -92.71 -0.79 13.50 16 38 H 0.14 5.82 6.73 -2.91 -0.02 5.80 16 39 H 0.13 6.50 8.06 -2.91 -0.02 6.48 16 40 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 41 H 0.11 6.22 6.19 -2.91 -0.02 6.20 16 42 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -69.47 373.08 4.23 -65.24 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: 0.25 Total: 39.60 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 5.86 Total: -28.57 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.72 Total: -96.68 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.20 Total: -18.84 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -69.47 4.23 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168567929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds