Wall clock time and date at job start Tue Mar 31 2020 14:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00408 * 2 1 4 4 C 1.52995 * 109.46867 * 124.99880 * 3 2 1 5 5 H 1.09001 * 109.47172 * 55.00192 * 4 3 2 6 6 N 1.46500 * 109.47787 * 295.00272 * 4 3 2 7 7 C 1.38087 * 119.99834 * 84.99686 * 6 4 3 8 8 N 1.31364 * 119.76865 * 0.02562 * 7 6 4 9 9 C 1.34029 * 121.97232 * 179.97438 * 8 7 6 10 10 C 1.40425 * 120.12090 * 180.02562 * 9 8 7 11 11 C 1.36285 * 119.97057 * 179.97438 * 10 9 8 12 12 C 1.39302 * 121.06670 * 0.02562 * 11 10 9 13 13 C 1.36130 * 120.77020 * 359.97438 * 12 11 10 14 14 C 1.40852 * 119.70954 * 0.02562 * 13 12 11 15 15 C 1.40233 * 120.57301 * 180.02562 * 14 13 12 16 16 C 1.40269 * 118.13429 * 179.97438 * 15 14 13 17 17 C 1.40903 * 120.69737 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00233 * 150.28005 * 17 16 15 19 19 C 1.40069 * 119.99668 * 330.27838 * 17 16 15 20 20 N 1.30790 * 120.00188 * 161.90648 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 341.90547 * 19 17 16 22 22 H 1.48498 * 109.47192 * 95.37468 * 21 19 17 23 23 H 1.48502 * 109.46694 * 215.37208 * 21 19 17 24 24 H 1.48502 * 109.47082 * 335.36871 * 21 19 17 25 25 C 1.50700 * 109.47125 * 175.00014 * 4 3 2 26 26 O 1.20833 * 119.99710 * 119.99957 * 25 4 3 27 27 O 1.34225 * 120.00394 * 300.00670 * 25 4 3 28 28 C 1.45194 * 117.00349 * 179.97438 * 27 25 4 29 29 H 1.08002 * 119.99810 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00530 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99600 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46644 * 5.00413 * 3 2 1 33 33 H 1.08995 * 109.47250 * 245.00309 * 3 2 1 34 34 H 0.96993 * 120.00107 * 265.00757 * 6 4 3 35 35 H 1.08004 * 120.02082 * 359.95579 * 10 9 8 36 36 H 1.08001 * 119.47030 * 179.72226 * 11 10 9 37 37 H 1.07994 * 119.61692 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.15123 * 179.97438 * 13 12 11 39 39 H 1.07992 * 120.93271 * 0.02562 * 15 14 13 40 40 H 0.96992 * 120.00421 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47397 * 59.99925 * 28 27 25 42 42 H 1.08996 * 109.47616 * 179.97438 * 28 27 25 43 43 H 1.08998 * 109.47594 * 299.99888 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6826 0.4571 1.1403 6 7 2.2787 1.3221 2.4362 7 6 1.8598 0.1238 2.9796 8 7 2.1426 -1.0039 2.3680 9 6 1.7585 -2.1916 2.8560 10 6 2.0824 -3.3734 2.1702 11 6 1.6908 -4.5795 2.6694 12 6 0.9683 -4.6654 3.8573 13 6 0.6344 -3.5434 4.5521 14 6 1.0226 -2.2798 4.0657 15 6 0.6888 -1.1122 4.7671 16 6 1.1018 0.1189 4.2366 17 6 0.7963 1.3255 4.8970 18 1 1.4582 2.1738 4.8054 19 6 -0.3661 1.4246 5.6723 20 7 -0.4835 2.3823 6.5554 21 14 -1.7486 0.1891 5.4451 22 1 -1.6091 -0.8994 6.4456 23 1 -3.0555 0.8689 5.6321 24 1 -1.6801 -0.3843 4.0770 25 6 3.8749 2.5823 1.1121 26 8 3.8445 3.3817 2.0177 27 8 4.6564 2.8071 0.0443 28 6 5.4374 4.0312 0.0450 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3587 2.1315 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.0720 2.1567 2.8851 35 1 2.6414 -3.3266 1.2472 36 1 1.9404 -5.4830 2.1330 37 1 0.6695 -5.6334 4.2315 38 1 0.0736 -3.6216 5.4718 39 1 0.1303 -1.1596 5.6902 40 1 -1.2885 2.4511 7.0920 41 1 6.1079 4.0340 0.9044 42 1 6.0231 4.0891 -0.8724 43 1 4.7679 4.8893 0.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169836683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:37 Heat of formation + Delta-G solvation = -13.287298 kcal Electronic energy + Delta-G solvation = -27893.825032 eV Core-core repulsion = 24097.300037 eV Total energy + Delta-G solvation = -3796.524995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.61630 -39.38707 -37.42858 -36.36262 -35.42929 -33.98586 -33.03605 -32.06379 -30.37019 -29.53060 -28.07042 -27.32276 -25.41576 -24.36786 -22.34143 -21.80975 -20.97501 -20.34632 -19.46111 -18.57016 -17.66544 -17.15183 -16.52973 -16.35441 -16.10251 -15.81565 -15.00101 -14.68796 -14.34137 -14.23672 -13.62549 -13.61567 -13.37442 -13.21097 -13.11068 -12.76706 -12.69098 -12.48045 -12.14542 -12.02841 -11.97877 -11.45401 -11.26289 -11.12153 -10.91550 -10.87307 -10.85353 -10.58742 -10.30901 -10.21625 -10.00820 -9.59924 -9.19795 -9.01726 -8.71169 -8.27440 -7.43008 -7.19631 -6.80189 -4.59972 1.60152 2.04565 2.17102 2.50708 2.86859 2.98311 3.07517 3.14401 3.29270 3.81425 3.86249 3.91170 4.62901 4.68633 5.00190 5.06874 5.14835 5.22303 5.37123 5.40911 5.42494 5.56906 5.65222 5.69339 5.75344 5.79963 5.92261 6.07910 6.11916 6.23583 6.28240 6.32463 6.42032 6.62766 6.79896 6.88108 7.04899 7.15361 7.16636 7.26325 7.32518 7.49321 7.59346 7.66139 7.73670 7.81154 8.07047 8.11101 8.40082 8.49201 9.24866 9.79309 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.005528 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.029318 B = 5063.812742 C = 6817.892042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.098 4.098 4 C 0.177 3.823 5 H 0.125 0.875 6 N -0.700 5.700 7 C 0.408 3.592 8 N -0.547 5.547 9 C 0.087 3.913 10 C -0.085 4.085 11 C -0.165 4.165 12 C -0.131 4.131 13 C -0.133 4.133 14 C -0.045 4.045 15 C -0.267 4.267 16 C 0.038 3.962 17 C -0.417 4.417 18 H 0.097 0.903 19 C 0.085 3.915 20 N -0.788 5.788 21 Si 0.916 3.084 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.242 1.242 25 C 0.456 3.544 26 O -0.497 6.497 27 O -0.356 6.356 28 C 0.035 3.965 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.419 0.581 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.291 0.709 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -1.112 -10.996 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.135 4.135 3 C -0.136 4.136 4 C 0.069 3.931 5 H 0.143 0.857 6 N -0.340 5.340 7 C 0.153 3.847 8 N -0.267 5.267 9 C -0.029 4.029 10 C -0.104 4.104 11 C -0.185 4.185 12 C -0.150 4.150 13 C -0.152 4.152 14 C -0.048 4.048 15 C -0.292 4.292 16 C 0.030 3.970 17 C -0.445 4.445 18 H 0.115 0.885 19 C -0.137 4.137 20 N -0.410 5.410 21 Si 0.742 3.258 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.164 1.164 25 C 0.298 3.702 26 O -0.383 6.383 27 O -0.272 6.272 28 C -0.059 4.059 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.259 0.741 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.081 -0.796 -11.411 12.516 hybrid contribution -1.127 0.135 1.312 1.735 sum 3.954 -0.661 -10.099 10.865 Atomic orbital electron populations 1.23596 0.96055 1.00955 1.03375 1.22662 0.95668 0.97544 0.97620 1.21178 0.98157 0.97555 0.96760 1.20153 0.92521 0.93286 0.87118 0.85708 1.43873 1.59352 1.06960 1.23826 1.19779 0.91513 0.85124 0.88292 1.67016 1.28032 0.96636 1.35021 1.17973 1.00748 0.90387 0.93833 1.20396 1.00177 0.90869 0.98998 1.20337 1.03601 0.96694 0.97862 1.20461 1.00853 0.97371 0.96280 1.20824 1.02200 0.92174 0.99990 1.18405 0.97657 0.93717 0.95052 1.20767 1.15219 0.90294 1.02899 1.19006 0.93659 0.94263 0.90022 1.19363 1.05854 0.98057 1.21258 0.88539 1.26223 1.00208 0.95652 0.91640 1.69652 1.28182 1.29121 1.14007 0.86143 0.77896 0.79488 0.82252 1.19343 1.21849 1.16448 1.24120 0.78278 0.88226 0.79599 1.90696 1.63344 1.46470 1.37781 1.86497 1.54261 1.42984 1.43500 1.23264 0.94783 0.84462 1.03393 0.89567 0.89098 0.86108 0.91233 0.89575 0.74088 0.87121 0.87745 0.87912 0.87604 0.87060 0.89864 0.91884 0.88107 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 29.01 0.42 -2.83 16 2 C -0.12 -1.80 6.88 -36.03 -0.25 -2.05 16 3 C -0.10 -1.34 5.30 -27.88 -0.15 -1.49 16 4 C 0.18 2.75 2.76 -69.08 -0.19 2.56 16 5 H 0.13 1.95 7.53 -51.93 -0.39 1.56 16 6 N -0.70 -13.31 4.98 -53.28 -0.27 -13.57 16 7 C 0.41 8.84 6.99 -153.66 -1.07 7.76 16 8 N -0.55 -11.39 6.53 -8.56 -0.06 -11.45 16 9 C 0.09 1.87 6.60 -84.69 -0.56 1.31 16 10 C -0.08 -1.58 9.94 -39.46 -0.39 -1.98 16 11 C -0.17 -2.85 9.95 -39.89 -0.40 -3.24 16 12 C -0.13 -2.32 9.96 -39.94 -0.40 -2.72 16 13 C -0.13 -2.67 9.75 -39.35 -0.38 -3.06 16 14 C -0.04 -1.02 5.74 -106.77 -0.61 -1.63 16 15 C -0.27 -6.39 7.01 -38.07 -0.27 -6.66 16 16 C 0.04 0.90 5.27 -104.67 -0.55 0.35 16 17 C -0.42 -10.37 9.01 -37.89 -0.34 -10.71 16 18 H 0.10 2.47 7.10 -52.49 -0.37 2.10 16 19 C 0.08 2.09 5.42 -17.31 -0.09 1.99 16 20 N -0.79 -19.66 13.93 55.55 0.77 -18.89 16 21 Si 0.92 20.27 24.54 -169.99 -4.17 16.10 16 22 H -0.27 -5.83 6.71 56.52 0.38 -5.45 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.24 -5.60 6.85 56.52 0.39 -5.22 16 25 C 0.46 6.87 7.32 36.01 0.26 7.13 16 26 O -0.50 -8.87 15.59 -18.76 -0.29 -9.16 16 27 O -0.36 -4.43 10.37 -39.24 -0.41 -4.84 16 28 C 0.03 0.33 10.56 101.05 1.07 1.39 16 29 H 0.09 1.33 7.84 -52.49 -0.41 0.92 16 30 H 0.09 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.12 1.94 7.32 -52.49 -0.38 1.56 16 32 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 33 H 0.09 0.98 7.99 -51.93 -0.42 0.57 16 34 H 0.42 8.35 6.21 -40.82 -0.25 8.09 16 35 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.11 2.67 4.80 -52.49 -0.25 2.42 16 40 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -27.60 358.96 -8.36 -35.95 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.44 Total: 14.29 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.91 Total: -13.85 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.45 Total: -43.91 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.70 Total: -13.99 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.17 Total: 16.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.60 -8.36 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169836683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.667 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds