Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00408 * 2 1 4 4 C 1.52995 * 109.46867 * 124.99880 * 3 2 1 5 5 H 1.09001 * 109.47172 * 55.00192 * 4 3 2 6 6 N 1.46500 * 109.47787 * 295.00272 * 4 3 2 7 7 C 1.38087 * 119.99834 * 84.99686 * 6 4 3 8 8 N 1.31364 * 119.76865 * 0.02562 * 7 6 4 9 9 C 1.34029 * 121.97232 * 179.97438 * 8 7 6 10 10 C 1.40425 * 120.12090 * 180.02562 * 9 8 7 11 11 C 1.36285 * 119.97057 * 179.97438 * 10 9 8 12 12 C 1.39302 * 121.06670 * 0.02562 * 11 10 9 13 13 C 1.36130 * 120.77020 * 359.97438 * 12 11 10 14 14 C 1.40852 * 119.70954 * 0.02562 * 13 12 11 15 15 C 1.40233 * 120.57301 * 180.02562 * 14 13 12 16 16 C 1.40269 * 118.13429 * 179.97438 * 15 14 13 17 17 C 1.40903 * 120.69737 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00233 * 150.28005 * 17 16 15 19 19 C 1.40069 * 119.99668 * 330.27838 * 17 16 15 20 20 N 1.30790 * 120.00188 * 161.90648 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 341.90547 * 19 17 16 22 22 H 1.48498 * 109.47192 * 95.37468 * 21 19 17 23 23 H 1.48502 * 109.46694 * 215.37208 * 21 19 17 24 24 H 1.48502 * 109.47082 * 335.36871 * 21 19 17 25 25 C 1.50700 * 109.47125 * 175.00014 * 4 3 2 26 26 O 1.20833 * 119.99710 * 119.99957 * 25 4 3 27 27 O 1.34225 * 120.00394 * 300.00670 * 25 4 3 28 28 C 1.45194 * 117.00349 * 179.97438 * 27 25 4 29 29 H 1.08002 * 119.99810 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00530 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99600 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46644 * 5.00413 * 3 2 1 33 33 H 1.08995 * 109.47250 * 245.00309 * 3 2 1 34 34 H 0.96993 * 120.00107 * 265.00757 * 6 4 3 35 35 H 1.08004 * 120.02082 * 359.95579 * 10 9 8 36 36 H 1.08001 * 119.47030 * 179.72226 * 11 10 9 37 37 H 1.07994 * 119.61692 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.15123 * 179.97438 * 13 12 11 39 39 H 1.07992 * 120.93271 * 0.02562 * 15 14 13 40 40 H 0.96992 * 120.00421 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47397 * 59.99925 * 28 27 25 42 42 H 1.08996 * 109.47616 * 179.97438 * 28 27 25 43 43 H 1.08998 * 109.47594 * 299.99888 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6826 0.4571 1.1403 6 7 2.2787 1.3221 2.4362 7 6 1.8598 0.1238 2.9796 8 7 2.1426 -1.0039 2.3680 9 6 1.7585 -2.1916 2.8560 10 6 2.0824 -3.3734 2.1702 11 6 1.6908 -4.5795 2.6694 12 6 0.9683 -4.6654 3.8573 13 6 0.6344 -3.5434 4.5521 14 6 1.0226 -2.2798 4.0657 15 6 0.6888 -1.1122 4.7671 16 6 1.1018 0.1189 4.2366 17 6 0.7963 1.3255 4.8970 18 1 1.4582 2.1738 4.8054 19 6 -0.3661 1.4246 5.6723 20 7 -0.4835 2.3823 6.5554 21 14 -1.7486 0.1891 5.4451 22 1 -1.6091 -0.8994 6.4456 23 1 -3.0555 0.8689 5.6321 24 1 -1.6801 -0.3843 4.0770 25 6 3.8749 2.5823 1.1121 26 8 3.8445 3.3817 2.0177 27 8 4.6564 2.8071 0.0443 28 6 5.4374 4.0312 0.0450 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3587 2.1315 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.0720 2.1567 2.8851 35 1 2.6414 -3.3266 1.2472 36 1 1.9404 -5.4830 2.1330 37 1 0.6695 -5.6334 4.2315 38 1 0.0736 -3.6216 5.4718 39 1 0.1303 -1.1596 5.6902 40 1 -1.2885 2.4511 7.0920 41 1 6.1079 4.0340 0.9044 42 1 6.0231 4.0891 -0.8724 43 1 4.7679 4.8893 0.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169836683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = -26.937620 kcal Electronic energy + Delta-G solvation = -27894.416955 eV Core-core repulsion = 24097.300037 eV Total energy + Delta-G solvation = -3797.116917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.82711 -40.96434 -38.79737 -37.59408 -36.88802 -35.69274 -34.42105 -33.76776 -31.82753 -31.04135 -29.42142 -28.35052 -27.13546 -25.61058 -23.91262 -23.36845 -22.54165 -21.63882 -20.71783 -20.16303 -19.12808 -18.45836 -17.97080 -17.62510 -17.55702 -17.30608 -16.39223 -16.17847 -15.69223 -15.64184 -15.19236 -14.98717 -14.82804 -14.61696 -14.44671 -14.31865 -14.04809 -13.82815 -13.71369 -13.63287 -12.96723 -12.94009 -12.84084 -12.71207 -12.35781 -12.13643 -12.07539 -11.94805 -11.84978 -11.76126 -11.45591 -11.40670 -10.71968 -10.61000 -10.07611 -9.90976 -9.09699 -9.02390 -8.35372 -6.45121 -0.00174 0.42666 0.96550 1.20107 1.28629 1.35573 1.38579 1.54335 1.63757 2.06457 2.21934 2.44433 2.86963 3.58039 3.67100 3.86212 3.98548 4.02007 4.13965 4.18405 4.30952 4.32391 4.34009 4.38865 4.53306 4.57356 4.65149 4.71016 4.73035 4.82963 4.92703 4.98463 5.12916 5.16813 5.20603 5.28102 5.45295 5.50690 5.81640 5.87906 5.90144 5.91574 6.01302 6.06273 6.17512 6.28047 6.48178 6.59420 6.63375 6.75018 7.57120 8.02866 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.005528 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.029318 B = 5063.812742 C = 6817.892042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.112 4.112 3 C -0.090 4.090 4 C 0.177 3.823 5 H 0.129 0.871 6 N -0.701 5.701 7 C 0.400 3.600 8 N -0.535 5.535 9 C 0.074 3.926 10 C -0.094 4.094 11 C -0.143 4.143 12 C -0.123 4.123 13 C -0.147 4.147 14 C -0.082 4.082 15 C -0.269 4.269 16 C 0.017 3.983 17 C -0.446 4.446 18 H 0.073 0.927 19 C 0.058 3.942 20 N -0.826 5.826 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.261 1.261 25 C 0.465 3.535 26 O -0.531 6.531 27 O -0.349 6.349 28 C 0.027 3.973 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.412 0.588 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.298 0.702 41 H 0.059 0.941 42 H 0.140 0.860 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -3.919 -13.388 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.130 4.130 3 C -0.129 4.129 4 C 0.070 3.930 5 H 0.146 0.854 6 N -0.339 5.339 7 C 0.145 3.855 8 N -0.255 5.255 9 C -0.043 4.043 10 C -0.114 4.114 11 C -0.163 4.163 12 C -0.142 4.142 13 C -0.166 4.166 14 C -0.086 4.086 15 C -0.294 4.294 16 C 0.010 3.990 17 C -0.475 4.475 18 H 0.091 0.909 19 C -0.160 4.160 20 N -0.451 5.451 21 Si 0.786 3.214 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.185 1.185 25 C 0.308 3.692 26 O -0.420 6.420 27 O -0.264 6.264 28 C -0.066 4.066 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.250 0.750 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.158 0.842 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.005 -3.593 -13.835 15.504 hybrid contribution -1.236 0.707 1.874 2.354 sum 4.769 -2.886 -11.961 13.196 Atomic orbital electron populations 1.23636 0.96484 1.00874 1.04398 1.22729 0.95483 0.98103 0.96686 1.21159 0.97846 0.96613 0.97244 1.20298 0.92787 0.93845 0.86095 0.85382 1.43933 1.59333 1.05802 1.24829 1.19766 0.91674 0.86165 0.87938 1.67126 1.27762 0.96284 1.34364 1.18513 1.00344 0.91614 0.93814 1.20720 1.00561 0.90304 0.99800 1.20889 1.00681 0.97664 0.97046 1.20925 0.99304 0.98114 0.95821 1.21049 1.02629 0.92110 1.00780 1.18677 0.99442 0.94286 0.96154 1.20921 1.14621 0.91201 1.02661 1.19180 0.94698 0.93932 0.91159 1.19239 1.06654 0.98049 1.23566 0.90875 1.26670 1.01253 0.96645 0.91392 1.69667 1.29242 1.30754 1.15432 0.85474 0.76855 0.78203 0.80833 1.18960 1.20379 1.18519 1.23912 0.78117 0.87472 0.79680 1.90696 1.64536 1.47542 1.39180 1.86479 1.53738 1.44357 1.41799 1.23631 0.94605 0.83073 1.05320 0.89423 0.89598 0.86376 0.91493 0.86296 0.74967 0.84801 0.83468 0.84134 0.86970 0.87972 0.89151 0.92260 0.84163 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.84 14.32 67.78 0.97 -5.87 16 2 C -0.11 -3.32 6.88 25.65 0.18 -3.14 16 3 C -0.09 -2.35 5.30 29.85 0.16 -2.20 16 4 C 0.18 5.39 2.76 44.24 0.12 5.51 16 5 H 0.13 3.85 7.53 -2.39 -0.02 3.83 16 6 N -0.70 -27.44 4.98 -322.48 -1.61 -29.04 16 7 C 0.40 17.73 6.99 135.70 0.95 18.68 16 8 N -0.54 -21.99 6.53 -180.99 -1.18 -23.17 16 9 C 0.07 3.08 6.60 40.24 0.27 3.34 16 10 C -0.09 -3.18 9.94 22.35 0.22 -2.96 16 11 C -0.14 -4.18 9.95 22.07 0.22 -3.97 16 12 C -0.12 -3.81 9.96 22.04 0.22 -3.59 16 13 C -0.15 -5.60 9.75 22.42 0.22 -5.38 16 14 C -0.08 -3.68 5.74 -21.26 -0.12 -3.80 16 15 C -0.27 -13.20 7.01 23.25 0.16 -13.04 16 16 C 0.02 0.86 5.27 -19.89 -0.10 0.76 16 17 C -0.45 -23.63 9.01 23.37 0.21 -23.42 16 18 H 0.07 4.09 7.10 -2.91 -0.02 4.06 16 19 C 0.06 3.02 5.42 85.29 0.46 3.48 16 20 N -0.83 -43.44 13.93 21.85 0.30 -43.13 16 21 Si 0.96 43.30 24.54 68.60 1.68 44.98 16 22 H -0.26 -11.53 6.71 99.48 0.67 -10.86 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.26 -12.43 6.85 99.48 0.68 -11.74 16 25 C 0.47 13.76 7.32 71.24 0.52 14.29 16 26 O -0.53 -19.30 15.59 21.94 0.34 -18.96 16 27 O -0.35 -7.98 10.37 -51.37 -0.53 -8.51 16 28 C 0.03 0.44 10.56 113.37 1.20 1.64 16 29 H 0.09 2.70 7.84 -2.91 -0.02 2.68 16 30 H 0.09 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.12 3.58 7.32 -2.91 -0.02 3.56 16 32 H 0.07 1.81 7.79 -2.39 -0.02 1.79 16 33 H 0.12 2.36 7.99 -2.39 -0.02 2.34 16 34 H 0.41 17.42 6.21 -92.71 -0.58 16.84 16 35 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.10 5.07 4.80 -2.91 -0.01 5.06 16 40 H 0.30 14.11 8.29 -92.71 -0.77 13.34 16 41 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 42 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -62.50 358.96 5.26 -57.24 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: 0.40 Total: 40.27 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.85 Total: -19.67 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -2.48 Total: -95.35 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.19 Total: -27.47 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.68 Total: 44.98 kcal Total: -62.50 5.26 -57.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169836683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.302 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds