Wall clock time and date at job start Tue Mar 31 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35621 * 116.99905 * 2 1 4 4 C 1.39161 * 120.50165 * 0.23451 * 3 2 1 5 5 C 1.38305 * 118.62639 * 180.27336 * 4 3 2 6 6 C 1.39947 * 119.59430 * 359.74040 * 5 4 3 7 7 N 1.38904 * 119.49532 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47283 * 180.02562 * 8 7 6 10 10 O 1.20758 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.50702 * 109.47186 * 180.02562 * 11 9 8 13 13 C 1.38240 * 120.00024 * 269.72916 * 12 11 9 14 14 C 1.38235 * 119.99843 * 179.76230 * 13 12 11 15 15 C 1.38232 * 119.99867 * 0.50785 * 14 13 12 16 16 C 1.38234 * 120.00006 * 359.75122 * 15 14 13 17 17 C 1.38225 * 120.00199 * 359.97438 * 16 15 14 18 18 N 1.31862 * 121.01049 * 0.02562 * 6 5 4 19 19 C 1.33829 * 121.47124 * 359.97438 * 18 6 5 20 20 C 1.40912 * 119.84965 * 179.97438 * 19 18 6 21 21 H 1.08004 * 119.99908 * 170.16173 * 20 19 18 22 22 C 1.40025 * 119.99865 * 349.89443 * 20 19 18 23 23 N 1.30779 * 120.00010 * 164.16703 * 22 20 19 24 24 Si 1.86799 * 120.00001 * 344.15695 * 22 20 19 25 25 H 1.48500 * 109.47010 * 90.00404 * 24 22 20 26 26 H 1.48504 * 109.47421 * 210.00436 * 24 22 20 27 27 H 1.48498 * 109.47096 * 330.00457 * 24 22 20 28 28 H 1.08994 * 109.47105 * 299.99849 * 1 2 3 29 29 H 1.08998 * 109.47118 * 60.00396 * 1 2 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.68680 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.20489 * 179.77155 * 5 4 3 33 33 H 0.97001 * 120.00158 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46926 * 300.00868 * 8 7 6 35 35 H 1.09001 * 109.46844 * 60.00029 * 8 7 6 36 36 H 1.09001 * 109.47446 * 300.00349 * 11 9 8 37 37 H 1.09006 * 109.46928 * 60.00466 * 11 9 8 38 38 H 1.08001 * 119.99844 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.99654 * 180.23310 * 14 13 12 40 40 H 1.08000 * 120.00064 * 179.71913 * 15 14 13 41 41 H 1.07998 * 119.99621 * 179.97438 * 16 15 14 42 42 H 1.08009 * 120.00303 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00293 * 2.91311 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3821 0.0049 5 6 1.9648 3.5932 -0.0011 6 6 3.3642 3.6108 -0.0063 7 7 4.0328 4.8283 -0.0128 8 6 3.2733 6.0812 -0.0137 9 6 4.2279 7.2473 -0.0218 10 8 5.4196 7.0520 -0.0270 11 6 3.6953 8.6570 -0.0248 12 6 4.8468 9.6290 -0.0337 13 6 5.3768 10.0838 1.1594 14 6 6.4362 10.9716 1.1512 15 6 6.9589 11.4129 -0.0500 16 6 6.4255 10.9623 -1.2431 17 6 5.3698 10.0701 -1.2349 18 7 4.0577 2.4893 -0.0061 19 6 3.4544 1.2947 -0.0005 20 6 4.2291 0.1177 -0.0010 21 1 3.7569 -0.8397 0.1633 22 6 5.6103 0.1887 -0.2202 23 7 6.3731 -0.8304 0.0794 24 14 6.3631 1.7391 -0.9407 25 1 6.7410 2.6629 0.1588 26 1 7.5722 1.3835 -1.7260 27 1 5.3745 2.4034 -1.8276 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2176 2.3479 0.0084 32 1 1.4099 4.5197 -0.0012 33 1 5.0026 4.8491 -0.0169 34 1 2.6419 6.1226 -0.9011 35 1 2.6493 6.1283 0.8788 36 1 3.0825 8.8120 -0.9128 37 1 3.0899 8.8185 0.8672 38 1 4.9653 9.7427 2.0978 39 1 6.8527 11.3240 2.0833 40 1 7.7837 12.1101 -0.0565 41 1 6.8336 11.3074 -2.1815 42 1 4.9527 9.7183 -2.1670 43 1 5.9777 -1.6506 0.4137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170185510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:08 Heat of formation + Delta-G solvation = -20.109456 kcal Electronic energy + Delta-G solvation = -26160.396571 eV Core-core repulsion = 22363.575745 eV Total energy + Delta-G solvation = -3796.820826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24016 -39.20340 -38.74343 -37.13093 -34.82215 -33.37809 -33.18830 -31.09269 -30.88431 -29.92153 -28.45129 -26.75324 -25.79168 -24.94426 -22.79761 -21.97861 -21.66486 -20.45098 -19.70987 -18.29432 -17.22877 -17.06417 -16.78756 -15.97163 -15.93815 -15.54783 -15.12022 -14.96919 -14.81346 -14.76804 -13.86165 -13.75182 -13.63669 -13.50039 -13.35774 -13.16264 -12.74847 -12.51872 -12.45567 -12.17728 -12.10708 -12.04495 -11.73958 -11.35791 -11.21738 -10.86181 -10.71385 -10.54419 -10.09740 -9.87484 -9.61640 -9.11924 -9.10668 -8.90153 -8.71759 -8.48187 -7.84415 -7.24854 -6.60081 -4.58496 1.11959 1.21691 1.82415 2.60405 2.81964 3.37863 3.60949 3.69267 3.75692 3.99625 4.16634 4.38079 4.38958 4.49815 4.57935 4.65122 4.79553 4.89931 4.98694 5.14703 5.22749 5.30474 5.38408 5.40843 5.44766 5.59763 5.66120 5.74787 5.77546 5.80471 5.82879 5.94565 6.13644 6.24115 6.30973 6.35917 6.37285 6.48930 6.79624 6.98612 7.16619 7.36246 7.39909 7.55116 7.86225 8.04188 8.14154 8.41385 8.54518 8.87121 9.61702 10.02418 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002872 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.639745 B = 9748.633892 C =11137.760718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C -0.065 4.065 4 C -0.104 4.104 5 C -0.348 4.348 6 C 0.419 3.581 7 N -0.738 5.738 8 C 0.092 3.908 9 C 0.348 3.652 10 O -0.433 6.433 11 C -0.129 4.129 12 C -0.075 4.075 13 C -0.108 4.108 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.108 4.108 18 N -0.599 5.599 19 C 0.282 3.718 20 C -0.456 4.456 21 H 0.091 0.909 22 C 0.050 3.950 23 N -0.798 5.798 24 Si 1.141 2.859 25 H -0.285 1.285 26 H -0.327 1.327 27 H -0.280 1.280 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.404 0.596 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 20.807 -0.433 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C -0.112 4.112 4 C -0.128 4.128 5 C -0.374 4.374 6 C 0.184 3.816 7 N -0.377 5.377 8 C -0.035 4.035 9 C 0.221 3.779 10 O -0.304 6.304 11 C -0.167 4.167 12 C -0.075 4.075 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.137 4.137 17 C -0.126 4.126 18 N -0.328 5.328 19 C 0.157 3.843 20 C -0.488 4.488 21 H 0.109 0.891 22 C -0.173 4.173 23 N -0.419 5.419 24 Si 0.974 3.026 25 H -0.212 1.212 26 H -0.260 1.260 27 H -0.207 1.207 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.619 21.173 -0.807 21.496 hybrid contribution -2.583 -0.661 0.612 2.735 sum -6.202 20.512 -0.195 21.430 Atomic orbital electron populations 1.22727 0.81715 1.01844 0.99779 1.85939 1.18184 1.27528 1.90694 1.19714 0.92915 0.83420 1.15175 1.20740 0.97636 0.92134 1.02269 1.20174 0.91845 0.96787 1.28592 1.17956 0.88125 0.84778 0.90718 1.43927 1.08653 1.00978 1.84185 1.21429 0.94732 0.83770 1.03538 1.24744 0.90154 0.91573 0.71397 1.90442 1.18375 1.87491 1.34099 1.21119 0.97633 0.91999 1.05925 1.19447 0.97183 0.97165 0.93665 1.21022 0.96764 0.97378 0.97445 1.21119 0.96603 0.97890 0.98111 1.21154 0.99916 1.00270 0.92664 1.21118 0.96604 0.97812 0.98185 1.21019 0.96831 0.97369 0.97368 1.66404 1.36924 0.96798 1.32710 1.17663 0.86580 0.90066 0.89965 1.20648 0.94305 0.93767 1.40091 0.89094 1.27723 0.94166 1.04194 0.91207 1.70631 1.39763 1.04296 1.27225 0.82142 0.72094 0.71477 0.76866 1.21202 1.26013 1.20673 0.94320 0.94243 0.89951 0.87627 0.88118 0.75883 0.89147 0.89143 0.87132 0.87140 0.86149 0.86073 0.86186 0.86062 0.86135 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.83 101.05 0.99 1.58 16 2 O -0.31 -7.14 9.64 -18.56 -0.18 -7.32 16 3 C -0.06 -1.59 6.74 -38.10 -0.26 -1.85 16 4 C -0.10 -2.22 9.12 -39.21 -0.36 -2.57 16 5 C -0.35 -7.19 9.33 -38.92 -0.36 -7.55 16 6 C 0.42 9.53 7.65 -155.27 -1.19 8.34 16 7 N -0.74 -14.09 5.70 -61.52 -0.35 -14.44 16 8 C 0.09 1.19 5.30 -5.19 -0.03 1.16 16 9 C 0.35 4.17 7.22 -29.04 -0.21 3.96 16 10 O -0.43 -7.01 15.34 6.00 0.09 -6.91 16 11 C -0.13 -1.04 5.77 -29.04 -0.17 -1.21 16 12 C -0.07 -0.75 4.37 -104.62 -0.46 -1.21 16 13 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 14 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 15 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 16 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 17 C -0.11 -1.08 9.70 -39.59 -0.38 -1.46 16 18 N -0.60 -15.73 5.13 -10.20 -0.05 -15.78 16 19 C 0.28 7.69 6.26 -84.85 -0.53 7.16 16 20 C -0.46 -12.93 9.28 -37.90 -0.35 -13.28 16 21 H 0.09 2.63 7.57 -52.48 -0.40 2.24 16 22 C 0.05 1.40 5.51 -17.33 -0.10 1.30 16 23 N -0.80 -22.26 13.65 55.55 0.76 -21.50 16 24 Si 1.14 29.21 25.92 -169.99 -4.41 24.81 16 25 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.33 -8.20 7.11 56.52 0.40 -7.80 16 27 H -0.28 -7.24 6.58 56.52 0.37 -6.87 16 28 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 29 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 1.91 6.43 -52.49 -0.34 1.57 16 32 H 0.10 1.71 6.67 -52.49 -0.35 1.36 16 33 H 0.40 8.29 7.56 -40.82 -0.31 7.98 16 34 H 0.09 1.02 7.91 -51.93 -0.41 0.60 16 35 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 36 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.29 7.62 8.72 -40.82 -0.36 7.26 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -33.98 364.86 -9.18 -43.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.57 Total: 4.13 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.97 Total: -11.64 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.36 Total: -51.72 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.09 Total: -14.23 kcal Atomic # 14 Polarization: 29.21 SS G_CDS: -4.41 Total: 24.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.98 -9.18 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170185510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.051 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds