Wall clock time and date at job start Tue Mar 31 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35621 * 116.99905 * 2 1 4 4 C 1.39161 * 120.50165 * 0.23451 * 3 2 1 5 5 C 1.38305 * 118.62639 * 180.27336 * 4 3 2 6 6 C 1.39947 * 119.59430 * 359.74040 * 5 4 3 7 7 N 1.38904 * 119.49532 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47283 * 180.02562 * 8 7 6 10 10 O 1.20758 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.50702 * 109.47186 * 180.02562 * 11 9 8 13 13 C 1.38240 * 120.00024 * 269.72916 * 12 11 9 14 14 C 1.38235 * 119.99843 * 179.76230 * 13 12 11 15 15 C 1.38232 * 119.99867 * 0.50785 * 14 13 12 16 16 C 1.38234 * 120.00006 * 359.75122 * 15 14 13 17 17 C 1.38225 * 120.00199 * 359.97438 * 16 15 14 18 18 N 1.31862 * 121.01049 * 0.02562 * 6 5 4 19 19 C 1.33829 * 121.47124 * 359.97438 * 18 6 5 20 20 C 1.40912 * 119.84965 * 179.97438 * 19 18 6 21 21 H 1.08004 * 119.99908 * 170.16173 * 20 19 18 22 22 C 1.40025 * 119.99865 * 349.89443 * 20 19 18 23 23 N 1.30779 * 120.00010 * 164.16703 * 22 20 19 24 24 Si 1.86799 * 120.00001 * 344.15695 * 22 20 19 25 25 H 1.48500 * 109.47010 * 90.00404 * 24 22 20 26 26 H 1.48504 * 109.47421 * 210.00436 * 24 22 20 27 27 H 1.48498 * 109.47096 * 330.00457 * 24 22 20 28 28 H 1.08994 * 109.47105 * 299.99849 * 1 2 3 29 29 H 1.08998 * 109.47118 * 60.00396 * 1 2 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.68680 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.20489 * 179.77155 * 5 4 3 33 33 H 0.97001 * 120.00158 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46926 * 300.00868 * 8 7 6 35 35 H 1.09001 * 109.46844 * 60.00029 * 8 7 6 36 36 H 1.09001 * 109.47446 * 300.00349 * 11 9 8 37 37 H 1.09006 * 109.46928 * 60.00466 * 11 9 8 38 38 H 1.08001 * 119.99844 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.99654 * 180.23310 * 14 13 12 40 40 H 1.08000 * 120.00064 * 179.71913 * 15 14 13 41 41 H 1.07998 * 119.99621 * 179.97438 * 16 15 14 42 42 H 1.08009 * 120.00303 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00293 * 2.91311 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3821 0.0049 5 6 1.9648 3.5932 -0.0011 6 6 3.3642 3.6108 -0.0063 7 7 4.0328 4.8283 -0.0128 8 6 3.2733 6.0812 -0.0137 9 6 4.2279 7.2473 -0.0218 10 8 5.4196 7.0520 -0.0270 11 6 3.6953 8.6570 -0.0248 12 6 4.8468 9.6290 -0.0337 13 6 5.3768 10.0838 1.1594 14 6 6.4362 10.9716 1.1512 15 6 6.9589 11.4129 -0.0500 16 6 6.4255 10.9623 -1.2431 17 6 5.3698 10.0701 -1.2349 18 7 4.0577 2.4893 -0.0061 19 6 3.4544 1.2947 -0.0005 20 6 4.2291 0.1177 -0.0010 21 1 3.7569 -0.8397 0.1633 22 6 5.6103 0.1887 -0.2202 23 7 6.3731 -0.8304 0.0794 24 14 6.3631 1.7391 -0.9407 25 1 6.7410 2.6629 0.1588 26 1 7.5722 1.3835 -1.7260 27 1 5.3745 2.4034 -1.8276 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2176 2.3479 0.0084 32 1 1.4099 4.5197 -0.0012 33 1 5.0026 4.8491 -0.0169 34 1 2.6419 6.1226 -0.9011 35 1 2.6493 6.1283 0.8788 36 1 3.0825 8.8120 -0.9128 37 1 3.0899 8.8185 0.8672 38 1 4.9653 9.7427 2.0978 39 1 6.8527 11.3240 2.0833 40 1 7.7837 12.1101 -0.0565 41 1 6.8336 11.3074 -2.1815 42 1 4.9527 9.7183 -2.1670 43 1 5.9777 -1.6506 0.4137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170185510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:08 Heat of formation + Delta-G solvation = -41.124347 kcal Electronic energy + Delta-G solvation = -26161.307845 eV Core-core repulsion = 22363.575745 eV Total energy + Delta-G solvation = -3797.732100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23204 -40.79204 -39.61779 -38.74930 -36.48048 -35.17853 -33.90822 -32.70329 -31.75819 -31.36980 -29.59340 -28.11345 -27.16413 -26.51456 -23.50023 -23.47305 -22.84319 -21.98407 -20.76791 -20.20586 -18.68288 -18.39103 -17.81313 -17.32669 -16.83304 -16.72734 -16.35951 -16.26188 -15.91186 -15.77945 -15.65532 -15.23634 -15.04585 -14.77008 -14.28676 -14.26213 -13.98156 -13.90048 -13.75732 -13.68958 -13.38574 -13.28931 -12.88820 -12.80738 -12.31809 -12.15785 -12.00287 -11.94643 -11.85239 -11.57253 -11.13015 -10.82381 -10.37725 -10.26216 -9.79821 -9.79734 -9.60240 -9.27712 -8.32782 -6.57508 0.42791 0.52430 0.73384 0.94041 1.02104 1.52812 1.65902 1.93287 2.28575 2.40225 2.66180 2.80110 2.94746 3.19887 3.63474 3.71701 3.97527 4.13013 4.16611 4.28268 4.32868 4.35612 4.40300 4.43955 4.50038 4.53434 4.55582 4.63836 4.68928 4.70777 4.73619 4.76528 4.80981 5.16704 5.17230 5.31092 5.43025 5.53784 5.57382 5.63543 5.66974 5.67376 5.99205 6.06831 6.14361 6.41545 6.54137 6.60319 6.70655 7.10971 7.76137 7.97132 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002872 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.639745 B = 9748.633892 C =11137.760718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.343 6.343 3 C -0.088 4.088 4 C -0.093 4.093 5 C -0.314 4.314 6 C 0.395 3.605 7 N -0.742 5.742 8 C 0.080 3.920 9 C 0.357 3.643 10 O -0.484 6.484 11 C -0.119 4.119 12 C -0.090 4.090 13 C -0.125 4.125 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.133 4.133 17 C -0.125 4.125 18 N -0.622 5.622 19 C 0.261 3.739 20 C -0.500 4.500 21 H 0.065 0.935 22 C 0.024 3.976 23 N -0.829 5.829 24 Si 1.180 2.820 25 H -0.291 1.291 26 H -0.324 1.324 27 H -0.287 1.287 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.393 0.607 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 24.359 -0.596 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.258 6.258 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.340 4.340 6 C 0.160 3.840 7 N -0.379 5.379 8 C -0.044 4.044 9 C 0.234 3.766 10 O -0.359 6.359 11 C -0.156 4.156 12 C -0.090 4.090 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.143 4.143 18 N -0.352 5.352 19 C 0.134 3.866 20 C -0.533 4.533 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.453 5.453 24 Si 1.012 2.988 25 H -0.219 1.219 26 H -0.256 1.256 27 H -0.215 1.215 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.228 0.772 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.029 24.779 -0.970 25.775 hybrid contribution -1.846 -1.465 0.685 2.454 sum -8.875 23.314 -0.285 24.948 Atomic orbital electron populations 1.23090 0.78402 1.04142 1.01214 1.85894 1.21664 1.27346 1.90879 1.19802 0.92429 0.85231 1.16120 1.21256 0.99763 0.90981 0.99778 1.20814 0.91090 0.98698 1.23383 1.18456 0.89506 0.85021 0.91038 1.44220 1.08668 1.01793 1.83205 1.21947 0.95014 0.81370 1.06115 1.25168 0.89149 0.92979 0.69306 1.90455 1.20401 1.88188 1.36848 1.21179 0.97271 0.88311 1.08830 1.19742 0.98025 0.97641 0.93620 1.21316 0.97168 0.97724 0.98132 1.21435 0.96730 0.97964 0.98993 1.21465 1.00426 1.00584 0.92638 1.21435 0.96712 0.97867 0.99074 1.21316 0.97231 0.97708 0.98050 1.66251 1.38554 0.97737 1.32613 1.17809 0.88372 0.90016 0.90407 1.20448 0.94780 0.93653 1.44410 0.91698 1.28306 0.94577 1.05286 0.91182 1.70646 1.39670 1.04727 1.30232 0.81593 0.71415 0.69734 0.76045 1.21854 1.25628 1.21504 0.92662 0.92567 0.87614 0.83343 0.82941 0.77165 0.86244 0.86223 0.84028 0.84051 0.85088 0.84604 0.84453 0.84567 0.85051 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.83 113.37 1.11 1.92 16 2 O -0.34 -15.67 9.64 -89.33 -0.86 -16.53 16 3 C -0.09 -4.25 6.74 23.23 0.16 -4.09 16 4 C -0.09 -3.58 9.12 22.51 0.21 -3.38 16 5 C -0.31 -11.34 9.33 22.70 0.21 -11.13 16 6 C 0.40 16.95 7.65 133.46 1.02 17.97 16 7 N -0.74 -26.35 5.70 -348.56 -1.99 -28.34 16 8 C 0.08 1.67 5.30 85.63 0.45 2.12 16 9 C 0.36 7.37 7.22 29.10 0.21 7.58 16 10 O -0.48 -15.05 15.34 -1.45 -0.02 -15.07 16 11 C -0.12 -1.40 5.77 29.10 0.17 -1.24 16 12 C -0.09 -1.61 4.37 -19.86 -0.09 -1.69 16 13 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 14 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 15 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 16 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 17 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 18 N -0.62 -32.63 5.13 -186.18 -0.95 -33.58 16 19 C 0.26 14.47 6.26 40.23 0.25 14.72 16 20 C -0.50 -30.02 9.28 23.36 0.22 -29.80 16 21 H 0.06 4.07 7.57 -2.91 -0.02 4.05 16 22 C 0.02 1.40 5.51 85.28 0.47 1.87 16 23 N -0.83 -49.10 13.65 21.84 0.30 -48.80 16 24 Si 1.18 62.08 25.92 68.60 1.78 63.86 16 25 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 26 H -0.32 -16.44 7.11 99.48 0.71 -15.73 16 27 H -0.29 -15.16 6.58 99.48 0.65 -14.50 16 28 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 29 H 0.06 1.49 7.70 -2.39 -0.02 1.48 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.15 4.41 6.43 -2.91 -0.02 4.39 16 32 H 0.15 3.93 6.67 -2.91 -0.02 3.91 16 33 H 0.39 15.79 7.56 -92.71 -0.70 15.09 16 34 H 0.12 1.90 7.91 -2.39 -0.02 1.88 16 35 H 0.12 1.90 7.92 -2.39 -0.02 1.88 16 36 H 0.14 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.14 0.83 8.08 -2.38 -0.02 0.81 16 38 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.28 16.16 8.72 -92.71 -0.81 15.35 16 Total: -1.00 -79.96 364.86 4.00 -75.96 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.25 Total: 18.06 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 5.49 Total: -15.56 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -2.64 Total: -110.72 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.88 Total: -31.60 kcal Atomic # 14 Polarization: 62.08 SS G_CDS: 1.78 Total: 63.86 kcal Total: -79.96 4.00 -75.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170185510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds