Wall clock time and date at job start Tue Mar 31 2020 14:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35912 * 117.00165 * 2 1 4 4 C 1.38750 * 120.47432 * 359.97438 * 3 2 1 5 5 N 1.31807 * 120.68373 * 180.02562 * 4 3 2 6 6 C 1.31884 * 121.77757 * 359.72502 * 5 4 3 7 7 C 1.38206 * 120.88853 * 0.54433 * 6 5 4 8 8 C 1.50697 * 120.38759 * 179.74841 * 7 6 5 9 9 C 1.53005 * 109.47240 * 269.72013 * 8 7 6 10 10 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00035 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00059 * 179.72326 * 10 9 8 13 13 C 1.39935 * 120.00088 * 174.96356 * 12 10 9 14 14 C 1.39293 * 119.94776 * 145.78417 * 13 12 10 15 15 C 1.38487 * 120.42872 * 180.02562 * 14 13 12 16 16 C 1.37684 * 120.32248 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88774 * 0.02562 * 16 15 14 18 18 C 1.41397 * 120.21280 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00178 * 205.17349 * 18 17 16 20 20 C 1.39931 * 120.00213 * 25.17064 * 18 17 16 21 21 N 1.30831 * 119.99654 * 16.79816 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 196.79861 * 20 18 17 23 23 H 1.48505 * 109.46939 * 94.96547 * 22 20 18 24 24 H 1.48503 * 109.47379 * 214.96217 * 22 20 18 25 25 H 1.48499 * 109.47438 * 334.96775 * 22 20 18 26 26 C 1.38244 * 119.94840 * 325.50743 * 13 12 10 27 27 C 1.38580 * 119.22421 * 359.47031 * 7 6 5 28 28 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47441 * 300.00425 * 1 2 3 30 30 H 1.09004 * 109.47235 * 59.99930 * 1 2 3 31 31 H 1.07998 * 119.65785 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.55372 * 180.27018 * 6 5 4 33 33 H 1.09001 * 109.47585 * 149.71963 * 8 7 6 34 34 H 1.09004 * 109.47318 * 29.71839 * 8 7 6 35 35 H 1.08997 * 109.47176 * 59.99892 * 9 8 7 36 36 H 1.09004 * 109.46823 * 300.00129 * 9 8 7 37 37 H 0.96996 * 120.00020 * 354.96862 * 12 10 9 38 38 H 1.07999 * 119.78657 * 359.96792 * 14 13 12 39 39 H 1.07998 * 119.83780 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.05601 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99977 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.15855 * 359.97438 * 26 13 12 43 43 H 1.08002 * 120.81089 * 180.22834 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0010 6 6 3.2080 3.6720 0.0043 7 6 4.0179 2.5522 -0.0005 8 6 5.5180 2.6963 0.0000 9 6 6.0262 2.7442 -1.4424 10 6 7.5264 2.8877 -1.4419 11 8 8.1296 2.9464 -0.3913 12 7 8.1981 2.9458 -2.6088 13 6 9.5770 3.1845 -2.6113 14 6 10.3845 2.5866 -3.5760 15 6 11.7503 2.8155 -3.5873 16 6 12.3251 3.6379 -2.6445 17 6 11.5219 4.2490 -1.6637 18 6 12.1050 5.0945 -0.6918 19 1 11.6199 5.2350 0.2628 20 6 13.3109 5.7490 -0.9668 21 7 13.7316 5.8536 -2.2012 22 14 14.3198 6.4734 0.4284 23 1 15.3554 5.4959 0.8496 24 1 14.9768 7.7228 -0.0325 25 1 13.4294 6.7771 1.5774 26 6 10.1348 4.0180 -1.6598 27 6 3.4344 1.2952 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.2214 2.3269 -0.0005 32 1 3.6570 4.6543 0.0081 33 1 5.9646 1.8455 0.5144 34 1 5.7944 3.6173 0.5133 35 1 5.5797 3.5951 -1.9569 36 1 5.7498 1.8233 -1.9558 37 1 7.7259 2.8221 -3.4470 38 1 9.9428 1.9395 -4.3193 39 1 12.3675 2.3467 -4.3394 40 1 13.3907 3.8138 -2.6577 41 1 14.5677 6.3070 -2.3919 42 1 9.5088 4.4859 -0.9144 43 1 4.0429 0.4029 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175815797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:13 Heat of formation + Delta-G solvation = -25.970468 kcal Electronic energy + Delta-G solvation = -25518.981189 eV Core-core repulsion = 21721.906211 eV Total energy + Delta-G solvation = -3797.074978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00340 -39.72941 -38.55155 -37.22991 -34.78653 -34.34496 -33.02491 -31.75813 -30.15985 -29.81408 -28.20112 -27.77820 -25.34388 -24.96454 -23.81022 -22.02050 -21.13003 -20.73519 -19.50799 -18.19696 -17.70386 -17.42541 -16.98191 -16.64651 -16.25960 -15.59507 -15.39131 -15.03203 -14.61947 -14.53125 -14.23671 -13.94649 -13.53828 -13.38144 -13.34710 -12.92213 -12.76990 -12.42675 -12.33055 -12.16577 -12.03689 -11.89915 -11.63795 -11.23857 -11.13171 -11.10379 -10.90196 -10.44710 -10.16150 -9.79253 -9.71527 -9.63311 -9.38932 -9.06912 -8.95675 -8.74241 -7.44513 -6.91193 -6.70406 -4.32904 0.78039 0.99338 2.59545 2.75566 2.84323 3.10520 3.15746 3.20768 3.36176 3.43942 3.66921 3.97635 4.17410 4.31005 4.52157 4.63661 4.65527 4.68304 4.72655 4.85264 4.87487 4.99182 5.03382 5.23206 5.30983 5.49097 5.63833 5.67837 5.73985 6.00881 6.08427 6.21743 6.25311 6.39709 6.77399 6.82118 7.02957 7.06006 7.08003 7.26467 7.56714 7.65804 7.73687 7.98272 8.10279 8.18711 8.26897 8.63436 8.74589 8.95062 8.99641 10.22672 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002077 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.818398 B =13480.288804 C =14287.239375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.078 3.922 4 C 0.009 3.991 5 N -0.448 5.448 6 C 0.066 3.934 7 C -0.086 4.086 8 C -0.063 4.063 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.518 6.518 12 N -0.669 5.669 13 C 0.150 3.850 14 C -0.262 4.262 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.210 4.210 27 C -0.107 4.107 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.106 0.894 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 -7.881 0.850 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.030 3.970 4 C -0.149 4.149 5 N -0.157 5.157 6 C -0.092 4.092 7 C -0.088 4.088 8 C -0.102 4.102 9 C -0.174 4.174 10 C 0.290 3.710 11 O -0.393 6.393 12 N -0.313 5.313 13 C 0.059 3.941 14 C -0.283 4.283 15 C -0.112 4.112 16 C -0.191 4.191 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.421 5.421 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.231 4.231 27 C -0.133 4.133 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.649 -7.170 1.487 22.854 hybrid contribution 0.443 -0.395 -0.051 0.596 sum -21.206 -7.565 1.436 22.561 Atomic orbital electron populations 1.23121 0.77981 1.04383 1.01591 1.86089 1.21660 1.26137 1.88567 1.20075 0.93150 0.85705 0.98045 1.22876 1.00450 0.87318 1.04277 1.67549 1.12188 1.26393 1.09521 1.22672 0.88492 0.98951 0.99107 1.20835 0.97531 0.92802 0.97664 1.20324 0.88212 1.05464 0.96180 1.21636 0.92747 1.04482 0.98496 1.20557 0.89441 0.76946 0.84097 1.90765 1.69754 1.47771 1.30962 1.43490 1.08261 1.71094 1.08462 1.17443 0.80561 0.97545 0.98575 1.20044 0.94039 1.09828 1.04432 1.20465 0.93518 0.98816 0.98376 1.21349 1.00069 0.99662 0.98059 1.17502 0.89946 0.89550 0.91427 1.19592 1.04550 1.23298 1.01297 0.90333 1.25907 0.97314 0.94793 0.96198 1.69831 1.19937 1.32850 1.19489 0.86290 0.80012 0.78586 0.81786 1.19358 1.20338 1.18529 1.20962 0.95140 1.04473 1.02529 1.20888 0.91549 0.98680 1.02182 0.87878 0.92387 0.92374 0.82726 0.82243 0.89438 0.89065 0.88678 0.88995 0.76816 0.89350 0.89080 0.86329 0.90967 0.87643 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.73 10.51 -19.46 -0.20 -2.94 16 3 C 0.08 0.75 6.71 -39.07 -0.26 0.49 16 4 C 0.01 0.08 10.22 -17.37 -0.18 -0.09 16 5 N -0.45 -5.02 10.36 -13.13 -0.14 -5.16 16 6 C 0.07 0.68 10.85 -17.54 -0.19 0.49 16 7 C -0.09 -0.86 5.15 -104.51 -0.54 -1.40 16 8 C -0.06 -0.68 4.66 -27.88 -0.13 -0.81 16 9 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 10 C 0.50 8.32 7.55 -10.99 -0.08 8.23 16 11 O -0.52 -10.92 13.74 5.55 0.08 -10.85 16 12 N -0.67 -11.49 5.34 -9.91 -0.05 -11.55 16 13 C 0.15 3.38 6.25 -83.76 -0.52 2.85 16 14 C -0.26 -5.76 9.97 -39.10 -0.39 -6.15 16 15 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 16 C -0.17 -4.52 8.69 -38.84 -0.34 -4.86 16 17 C 0.12 3.27 5.57 -106.85 -0.59 2.68 16 18 C -0.46 -12.57 9.05 -37.75 -0.34 -12.91 16 19 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.80 -20.76 10.94 55.55 0.61 -20.15 16 22 Si 0.91 19.15 29.59 -169.99 -5.03 14.12 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.21 -5.41 8.39 -38.68 -0.32 -5.73 16 27 C -0.11 -1.05 9.81 -39.14 -0.38 -1.43 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 30 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 31 H 0.16 1.06 6.32 -52.49 -0.33 0.73 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.40 5.22 8.82 -40.82 -0.36 4.86 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 41 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 42 H 0.11 2.78 6.49 -52.49 -0.34 2.44 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -32.83 367.46 -8.63 -41.46 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.50 Total: 9.40 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.93 Total: -19.88 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.42 Total: -36.86 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.13 Total: -13.79 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.83 -8.63 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175815797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.492 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds