Wall clock time and date at job start Tue Mar 31 2020 14:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35912 * 117.00165 * 2 1 4 4 C 1.38750 * 120.47432 * 359.97438 * 3 2 1 5 5 N 1.31807 * 120.68373 * 180.02562 * 4 3 2 6 6 C 1.31884 * 121.77757 * 359.72502 * 5 4 3 7 7 C 1.38206 * 120.88853 * 0.54433 * 6 5 4 8 8 C 1.50697 * 120.38759 * 179.74841 * 7 6 5 9 9 C 1.53005 * 109.47240 * 269.72013 * 8 7 6 10 10 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00035 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00059 * 179.72326 * 10 9 8 13 13 C 1.39935 * 120.00088 * 174.96356 * 12 10 9 14 14 C 1.39293 * 119.94776 * 145.78417 * 13 12 10 15 15 C 1.38487 * 120.42872 * 180.02562 * 14 13 12 16 16 C 1.37684 * 120.32248 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88774 * 0.02562 * 16 15 14 18 18 C 1.41397 * 120.21280 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00178 * 205.17349 * 18 17 16 20 20 C 1.39931 * 120.00213 * 25.17064 * 18 17 16 21 21 N 1.30831 * 119.99654 * 16.79816 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 196.79861 * 20 18 17 23 23 H 1.48505 * 109.46939 * 94.96547 * 22 20 18 24 24 H 1.48503 * 109.47379 * 214.96217 * 22 20 18 25 25 H 1.48499 * 109.47438 * 334.96775 * 22 20 18 26 26 C 1.38244 * 119.94840 * 325.50743 * 13 12 10 27 27 C 1.38580 * 119.22421 * 359.47031 * 7 6 5 28 28 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47441 * 300.00425 * 1 2 3 30 30 H 1.09004 * 109.47235 * 59.99930 * 1 2 3 31 31 H 1.07998 * 119.65785 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.55372 * 180.27018 * 6 5 4 33 33 H 1.09001 * 109.47585 * 149.71963 * 8 7 6 34 34 H 1.09004 * 109.47318 * 29.71839 * 8 7 6 35 35 H 1.08997 * 109.47176 * 59.99892 * 9 8 7 36 36 H 1.09004 * 109.46823 * 300.00129 * 9 8 7 37 37 H 0.96996 * 120.00020 * 354.96862 * 12 10 9 38 38 H 1.07999 * 119.78657 * 359.96792 * 14 13 12 39 39 H 1.07998 * 119.83780 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.05601 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99977 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.15855 * 359.97438 * 26 13 12 43 43 H 1.08002 * 120.81089 * 180.22834 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0010 6 6 3.2080 3.6720 0.0043 7 6 4.0179 2.5522 -0.0005 8 6 5.5180 2.6963 0.0000 9 6 6.0262 2.7442 -1.4424 10 6 7.5264 2.8877 -1.4419 11 8 8.1296 2.9464 -0.3913 12 7 8.1981 2.9458 -2.6088 13 6 9.5770 3.1845 -2.6113 14 6 10.3845 2.5866 -3.5760 15 6 11.7503 2.8155 -3.5873 16 6 12.3251 3.6379 -2.6445 17 6 11.5219 4.2490 -1.6637 18 6 12.1050 5.0945 -0.6918 19 1 11.6199 5.2350 0.2628 20 6 13.3109 5.7490 -0.9668 21 7 13.7316 5.8536 -2.2012 22 14 14.3198 6.4734 0.4284 23 1 15.3554 5.4959 0.8496 24 1 14.9768 7.7228 -0.0325 25 1 13.4294 6.7771 1.5774 26 6 10.1348 4.0180 -1.6598 27 6 3.4344 1.2952 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.2214 2.3269 -0.0005 32 1 3.6570 4.6543 0.0081 33 1 5.9646 1.8455 0.5144 34 1 5.7944 3.6173 0.5133 35 1 5.5797 3.5951 -1.9569 36 1 5.7498 1.8233 -1.9558 37 1 7.7259 2.8221 -3.4470 38 1 9.9428 1.9395 -4.3193 39 1 12.3675 2.3467 -4.3394 40 1 13.3907 3.8138 -2.6577 41 1 14.5677 6.3070 -2.3919 42 1 9.5088 4.4859 -0.9144 43 1 4.0429 0.4029 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175815797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:12 Heat of formation + Delta-G solvation = -46.504776 kcal Electronic energy + Delta-G solvation = -25519.871624 eV Core-core repulsion = 21721.906211 eV Total energy + Delta-G solvation = -3797.965413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73288 -41.15987 -39.27756 -38.92896 -36.24189 -35.52324 -34.80307 -32.53190 -31.74624 -31.12544 -29.66388 -28.35731 -27.26038 -25.98659 -24.55745 -23.31263 -22.73430 -22.12571 -20.99264 -19.49964 -18.87198 -18.15705 -18.01584 -17.62814 -17.37315 -16.88444 -16.77896 -16.53633 -16.35213 -15.48433 -15.25154 -15.00352 -14.76222 -14.64595 -14.30525 -14.27072 -14.05911 -13.76674 -13.51637 -13.25165 -13.06560 -12.95665 -12.88757 -12.76800 -12.70621 -12.40814 -12.17982 -12.04858 -11.93943 -11.50507 -11.15192 -10.87557 -10.69416 -10.46132 -10.41179 -9.44545 -9.39245 -8.74071 -8.59745 -6.36672 0.04524 0.25468 0.88427 1.00807 1.36328 1.48466 1.50156 1.84865 2.18530 2.21068 2.31064 2.73516 2.74855 3.47358 3.62153 3.68350 3.75421 3.90312 3.97452 4.06408 4.13944 4.33992 4.39374 4.43993 4.47155 4.50761 4.63798 4.64230 4.76346 4.89630 4.93996 5.06309 5.10602 5.13176 5.17708 5.26975 5.29535 5.34114 5.50316 5.77657 5.87707 6.08792 6.12282 6.22340 6.35689 6.68173 6.69963 6.92261 6.94399 7.02010 7.38347 8.33429 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002077 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.818398 B =13480.288804 C =14287.239375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.076 3.924 4 C 0.007 3.993 5 N -0.470 5.470 6 C 0.055 3.945 7 C -0.083 4.083 8 C -0.057 4.057 9 C -0.117 4.117 10 C 0.500 3.500 11 O -0.568 6.568 12 N -0.660 5.660 13 C 0.158 3.842 14 C -0.252 4.252 15 C -0.093 4.093 16 C -0.199 4.199 17 C 0.087 3.913 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.981 3.019 23 H -0.260 1.260 24 H -0.262 1.262 25 H -0.264 1.264 26 C -0.236 4.236 27 C -0.115 4.115 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.422 0.578 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.289 0.711 42 H 0.086 0.914 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.612 -9.028 -0.310 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.028 3.972 4 C -0.151 4.151 5 N -0.178 5.178 6 C -0.102 4.102 7 C -0.085 4.085 8 C -0.096 4.096 9 C -0.156 4.156 10 C 0.289 3.711 11 O -0.446 6.446 12 N -0.306 5.306 13 C 0.064 3.936 14 C -0.273 4.273 15 C -0.111 4.111 16 C -0.219 4.219 17 C 0.084 3.916 18 C -0.531 4.531 19 H 0.081 0.919 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.802 3.198 23 H -0.185 1.185 24 H -0.186 1.186 25 H -0.188 1.188 26 C -0.258 4.258 27 C -0.141 4.141 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.196 0.804 32 H 0.186 0.814 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.260 0.740 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.535 -8.333 0.280 24.969 hybrid contribution 0.821 -0.173 0.243 0.873 sum -22.715 -8.506 0.523 24.260 Atomic orbital electron populations 1.23436 0.75930 1.06061 1.02612 1.86077 1.23827 1.25677 1.88340 1.20134 0.93189 0.86199 0.97641 1.23258 1.01629 0.86856 1.03386 1.67580 1.12540 1.27313 1.10414 1.22856 0.88536 0.99543 0.99249 1.20622 0.96615 0.92947 0.98336 1.20199 0.88865 1.04491 0.96044 1.21632 0.87792 1.07055 0.99147 1.21606 0.91606 0.74963 0.82883 1.90758 1.71325 1.49716 1.32803 1.43441 1.06294 1.70750 1.10159 1.17531 0.83256 0.95685 0.97079 1.20492 0.93436 1.08961 1.04430 1.20842 0.94796 0.97617 0.97881 1.21304 0.99413 1.01650 0.99535 1.17857 0.91084 0.90349 0.92310 1.19737 1.06615 1.25490 1.01239 0.91873 1.26701 0.97604 0.94664 0.98825 1.69862 1.20593 1.33302 1.21082 0.85211 0.78133 0.78325 0.78124 1.18498 1.18635 1.18849 1.20944 0.94650 1.06435 1.03755 1.21063 0.92098 0.98870 1.02059 0.86010 0.91431 0.91243 0.80440 0.81394 0.90388 0.90298 0.86149 0.85889 0.74019 0.85059 0.86044 0.87894 0.90033 0.89576 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.21 16 2 O -0.33 -5.06 10.51 -92.55 -0.97 -6.03 16 3 C 0.08 1.33 6.71 22.60 0.15 1.49 16 4 C 0.01 0.11 10.22 84.82 0.87 0.98 16 5 N -0.47 -9.87 10.36 -195.44 -2.02 -11.89 16 6 C 0.06 1.08 10.85 84.68 0.92 2.00 16 7 C -0.08 -1.55 5.15 -19.79 -0.10 -1.65 16 8 C -0.06 -1.19 4.66 29.85 0.14 -1.05 16 9 C -0.12 -2.25 5.68 29.85 0.17 -2.08 16 10 C 0.50 16.07 7.55 87.66 0.66 16.73 16 11 O -0.57 -24.60 13.74 -3.07 -0.04 -24.64 16 12 N -0.66 -21.45 5.34 -303.65 -1.62 -23.07 16 13 C 0.16 6.99 6.25 38.10 0.24 7.23 16 14 C -0.25 -10.51 9.97 22.58 0.23 -10.29 16 15 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 16 C -0.20 -10.79 8.69 22.75 0.20 -10.59 16 17 C 0.09 5.02 5.57 -21.31 -0.12 4.90 16 18 C -0.50 -29.19 9.05 23.46 0.21 -28.98 16 19 H 0.06 3.70 7.90 -2.91 -0.02 3.67 16 20 C 0.04 1.95 5.16 85.25 0.44 2.39 16 21 N -0.82 -44.18 10.94 21.82 0.24 -43.94 16 22 Si 0.98 40.32 29.59 68.60 2.03 42.35 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.24 -12.67 8.39 22.85 0.19 -12.48 16 27 C -0.11 -2.07 9.81 22.56 0.22 -1.85 16 28 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.34 7.68 -2.39 -0.02 0.33 16 30 H 0.07 0.33 7.68 -2.38 -0.02 0.31 16 31 H 0.18 2.01 6.32 -2.91 -0.02 2.00 16 32 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 34 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.42 9.60 8.82 -92.71 -0.82 8.78 16 38 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 41 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 42 H 0.09 4.84 6.49 -2.91 -0.02 4.82 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.54 367.46 3.59 -71.95 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.23 Total: 31.35 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 5.75 Total: -36.07 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.41 Total: -78.91 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.01 Total: -30.67 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -75.54 3.59 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175815797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.450 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds