Wall clock time and date at job start Tue Mar 31 2020 14:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99695 * 2 1 4 4 N 1.32285 * 119.68755 * 0.24020 * 3 2 1 5 5 C 1.31926 * 121.64742 * 180.29369 * 4 3 2 6 6 C 1.38094 * 120.83882 * 359.72197 * 5 4 3 7 7 C 1.38781 * 119.28097 * 0.02562 * 6 5 4 8 8 C 1.38424 * 118.49029 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.44480 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47095 * 265.00049 * 9 8 7 11 11 O 1.21288 * 119.99885 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99820 * 179.72280 * 10 9 8 13 13 C 1.37095 * 120.00319 * 0.27499 * 12 10 9 14 14 H 1.08003 * 120.00176 * 325.42909 * 13 12 10 15 15 C 1.38953 * 120.00023 * 145.42687 * 13 12 10 16 16 N 1.31403 * 119.99900 * 337.05225 * 15 13 12 17 17 Si 1.86803 * 119.99761 * 157.05389 * 15 13 12 18 18 H 1.48507 * 109.47015 * 90.00244 * 17 15 13 19 19 H 1.48499 * 109.47143 * 209.99957 * 17 15 13 20 20 H 1.48494 * 109.47323 * 330.00313 * 17 15 13 21 21 C 1.46502 * 119.99784 * 180.27633 * 12 10 9 22 22 C 1.50693 * 109.47155 * 86.56684 * 21 12 10 23 23 C 1.38236 * 120.00080 * 264.58035 * 22 21 12 24 24 C 1.38238 * 120.00125 * 179.76731 * 23 22 21 25 25 C 1.38237 * 119.99802 * 0.50488 * 24 23 22 26 26 C 1.38239 * 120.00098 * 359.75275 * 25 24 23 27 27 C 1.38234 * 119.99844 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47371 * 300.00456 * 1 2 3 29 29 H 1.09007 * 109.46821 * 60.00824 * 1 2 3 30 30 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.58326 * 179.75026 * 5 4 3 32 32 H 1.07998 * 120.35779 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.75557 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47338 * 144.99630 * 9 8 7 35 35 H 1.08999 * 109.47051 * 25.00157 * 9 8 7 36 36 H 0.97004 * 119.99906 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.46789 * 206.56793 * 21 12 10 38 38 H 1.09001 * 109.47256 * 326.56038 * 21 12 10 39 39 H 1.08000 * 119.99663 * 0.02562 * 23 22 21 40 40 H 1.08001 * 119.99749 * 180.23529 * 24 23 22 41 41 H 1.07998 * 119.99926 * 179.72342 * 25 24 23 42 42 H 1.07994 * 119.99934 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.99770 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3144 0.0048 5 6 1.8766 3.5097 -0.0007 6 6 3.2505 3.6493 -0.0061 7 6 4.0482 2.5136 -0.0062 8 6 3.4321 1.2740 -0.0003 9 6 4.2557 0.0120 -0.0007 10 6 4.4203 -0.4800 -1.4156 11 8 3.9186 0.1341 -2.3334 12 7 5.1301 -1.5989 -1.6616 13 6 5.6977 -2.2927 -0.6243 14 1 6.0786 -1.7621 0.2358 15 6 5.7829 -3.6785 -0.6796 16 7 4.9624 -4.3570 -1.4496 17 14 7.0639 -4.5769 0.3410 18 1 6.4915 -4.9132 1.6694 19 1 7.4650 -5.8255 -0.3556 20 1 8.2533 -3.7062 0.5206 21 6 5.2952 -2.0738 -3.0377 22 6 6.4856 -1.3946 -3.6641 23 6 6.3081 -0.2613 -4.4354 24 6 7.4006 0.3646 -5.0060 25 6 8.6696 -0.1490 -4.8140 26 6 8.8466 -1.2855 -4.0472 27 6 7.7547 -1.9080 -3.4719 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.2513 4.3902 -0.0006 32 1 3.6993 4.6316 -0.0103 33 1 5.1251 2.5951 -0.0108 34 1 3.7520 -0.7508 0.5930 35 1 5.2362 0.2179 0.4288 36 1 5.0221 -5.3244 -1.4885 37 1 5.4529 -3.1524 -3.0333 38 1 4.3992 -1.8400 -3.6127 39 1 5.3163 0.1377 -4.5886 40 1 7.2623 1.2523 -5.6055 41 1 9.5227 0.3374 -5.2636 42 1 9.8380 -1.6869 -3.8975 43 1 7.8929 -2.7961 -2.8731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176237916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:49 Heat of formation + Delta-G solvation = -3.196927 kcal Electronic energy + Delta-G solvation = -27727.830352 eV Core-core repulsion = 23931.742908 eV Total energy + Delta-G solvation = -3796.087444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38532 -38.99225 -37.88366 -37.45307 -34.89226 -33.11649 -31.86292 -31.07094 -30.61829 -30.26323 -27.70426 -26.86522 -25.66666 -24.36432 -22.64447 -22.10886 -21.89726 -20.60467 -19.07668 -18.01850 -17.06608 -16.73024 -16.28615 -15.80626 -15.45508 -15.17589 -14.85646 -14.53950 -14.35315 -14.13780 -13.97077 -13.72329 -13.59959 -13.13058 -12.80172 -12.73196 -12.52488 -12.37209 -12.06154 -11.73280 -11.48238 -11.40354 -11.30682 -11.00183 -10.92845 -10.89073 -10.62070 -10.48980 -10.33450 -10.11874 -9.47500 -9.33223 -9.18755 -8.54074 -8.31244 -8.12316 -7.91972 -7.56797 -6.42921 -4.07439 1.48450 1.62470 1.96167 2.01652 3.07301 3.18746 3.22304 3.48945 3.91682 4.04202 4.12026 4.36744 4.58564 4.92788 5.02062 5.12421 5.30431 5.38890 5.43620 5.49244 5.49605 5.55536 5.59438 5.60659 5.83705 5.85527 5.90576 6.05231 6.12387 6.19204 6.30234 6.38748 6.43755 6.53156 6.63238 6.69469 6.76348 6.83136 7.05045 7.08153 7.18702 7.40357 7.47590 7.62493 7.64296 7.88642 8.15770 8.32629 9.04611 9.49507 9.93438 10.59166 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.004902 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.485277 B = 5710.391908 C = 7350.803956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.295 6.295 3 C 0.334 3.666 4 N -0.545 5.545 5 C 0.122 3.878 6 C -0.213 4.213 7 C -0.040 4.040 8 C -0.111 4.111 9 C -0.074 4.074 10 C 0.483 3.517 11 O -0.597 6.597 12 N -0.433 5.433 13 C -0.337 4.337 14 H 0.090 0.910 15 C 0.046 3.954 16 N -0.854 5.854 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.147 3.853 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.097 4.097 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 8.405 1.328 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.201 6.201 3 C 0.155 3.845 4 N -0.269 5.269 5 C -0.033 4.033 6 C -0.233 4.233 7 C -0.065 4.065 8 C -0.114 4.114 9 C -0.115 4.115 10 C 0.271 3.729 11 O -0.482 6.482 12 N -0.151 5.151 13 C -0.465 4.465 14 H 0.107 0.893 15 C -0.161 4.161 16 N -0.490 5.490 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.024 3.976 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.115 4.115 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.825 8.101 0.831 8.185 hybrid contribution 1.385 -0.337 0.527 1.520 sum 0.560 7.764 1.358 7.901 Atomic orbital electron populations 1.22781 0.78041 1.02662 1.01737 1.86353 1.22136 1.24254 1.87318 1.19591 0.88940 0.84477 0.91539 1.67256 1.40933 0.98828 1.19855 1.22202 0.92797 0.93486 0.94838 1.21831 0.94911 0.99312 1.07263 1.21272 1.00371 0.90877 0.93986 1.19638 0.91137 0.96395 1.04232 1.20248 0.99492 0.93927 0.97785 1.20117 0.79686 0.83476 0.89572 1.90516 1.51877 1.59470 1.46325 1.43334 1.44585 1.22267 1.04931 1.19378 1.38036 0.89026 1.00056 0.89284 1.25271 0.96546 0.96809 0.97441 1.69945 1.32439 1.07902 1.38734 0.86295 0.81587 0.79121 0.79952 1.20155 1.20625 1.19208 1.20393 0.93080 1.01138 0.82993 1.20645 0.96228 0.95410 0.95590 1.21247 0.98923 0.95093 0.96798 1.21040 0.92983 0.99960 1.01104 1.20957 0.96735 0.97195 1.00480 1.21047 0.98361 0.96634 0.99051 1.21113 0.92100 1.00046 0.98268 0.92836 0.92647 0.88892 0.83067 0.85114 0.84674 0.87972 0.89402 0.91947 0.86777 0.92028 0.85964 0.87073 0.87179 0.86967 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 101.05 1.05 1.70 16 2 O -0.29 -5.76 9.64 -18.74 -0.18 -5.94 16 3 C 0.33 6.42 7.47 -17.12 -0.13 6.29 16 4 N -0.54 -9.41 9.22 -13.33 -0.12 -9.53 16 5 C 0.12 1.74 11.18 -17.56 -0.20 1.54 16 6 C -0.21 -2.90 10.11 -39.43 -0.40 -3.30 16 7 C -0.04 -0.63 9.83 -39.31 -0.39 -1.02 16 8 C -0.11 -2.10 4.40 -104.32 -0.46 -2.56 16 9 C -0.07 -1.51 4.23 -29.03 -0.12 -1.63 16 10 C 0.48 11.58 7.60 -10.99 -0.08 11.50 16 11 O -0.60 -15.47 15.32 5.55 0.09 -15.38 16 12 N -0.43 -10.60 2.53 -116.09 -0.29 -10.89 16 13 C -0.34 -8.20 8.68 -14.93 -0.13 -8.33 16 14 H 0.09 2.07 6.99 -52.48 -0.37 1.70 16 15 C 0.05 1.10 4.91 -17.47 -0.09 1.01 16 16 N -0.85 -21.72 11.40 55.50 0.63 -21.08 16 17 Si 0.90 18.66 29.61 -169.99 -5.03 13.63 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C 0.15 3.49 5.07 -5.20 -0.03 3.46 16 22 C -0.08 -1.64 5.44 -104.63 -0.57 -2.21 16 23 C -0.10 -2.03 9.61 -39.58 -0.38 -2.41 16 24 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 25 C -0.14 -2.16 10.05 -39.58 -0.40 -2.55 16 26 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 27 C -0.10 -1.90 9.72 -39.58 -0.38 -2.28 16 28 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.05 0.82 8.11 -51.92 -0.42 0.40 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.10 2.14 7.67 -51.93 -0.40 1.74 16 35 H 0.09 1.61 7.56 -51.93 -0.39 1.22 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.11 2.84 5.38 -51.92 -0.28 2.56 16 38 H 0.06 1.52 7.43 -51.93 -0.39 1.14 16 39 H 0.12 2.54 7.78 -52.49 -0.41 2.13 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -30.07 369.70 -8.43 -38.50 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.59 Total: 11.23 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.50 Total: -6.09 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.22 Total: -41.51 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.10 Total: -21.32 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.07 -8.43 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176237916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.303 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds