Wall clock time and date at job start Tue Mar 31 2020 14:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99695 * 2 1 4 4 N 1.32285 * 119.68755 * 0.24020 * 3 2 1 5 5 C 1.31926 * 121.64742 * 180.29369 * 4 3 2 6 6 C 1.38094 * 120.83882 * 359.72197 * 5 4 3 7 7 C 1.38781 * 119.28097 * 0.02562 * 6 5 4 8 8 C 1.38424 * 118.49029 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.44480 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47095 * 265.00049 * 9 8 7 11 11 O 1.21288 * 119.99885 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99820 * 179.72280 * 10 9 8 13 13 C 1.37095 * 120.00319 * 0.27499 * 12 10 9 14 14 H 1.08003 * 120.00176 * 325.42909 * 13 12 10 15 15 C 1.38953 * 120.00023 * 145.42687 * 13 12 10 16 16 N 1.31403 * 119.99900 * 337.05225 * 15 13 12 17 17 Si 1.86803 * 119.99761 * 157.05389 * 15 13 12 18 18 H 1.48507 * 109.47015 * 90.00244 * 17 15 13 19 19 H 1.48499 * 109.47143 * 209.99957 * 17 15 13 20 20 H 1.48494 * 109.47323 * 330.00313 * 17 15 13 21 21 C 1.46502 * 119.99784 * 180.27633 * 12 10 9 22 22 C 1.50693 * 109.47155 * 86.56684 * 21 12 10 23 23 C 1.38236 * 120.00080 * 264.58035 * 22 21 12 24 24 C 1.38238 * 120.00125 * 179.76731 * 23 22 21 25 25 C 1.38237 * 119.99802 * 0.50488 * 24 23 22 26 26 C 1.38239 * 120.00098 * 359.75275 * 25 24 23 27 27 C 1.38234 * 119.99844 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47371 * 300.00456 * 1 2 3 29 29 H 1.09007 * 109.46821 * 60.00824 * 1 2 3 30 30 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.58326 * 179.75026 * 5 4 3 32 32 H 1.07998 * 120.35779 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.75557 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47338 * 144.99630 * 9 8 7 35 35 H 1.08999 * 109.47051 * 25.00157 * 9 8 7 36 36 H 0.97004 * 119.99906 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.46789 * 206.56793 * 21 12 10 38 38 H 1.09001 * 109.47256 * 326.56038 * 21 12 10 39 39 H 1.08000 * 119.99663 * 0.02562 * 23 22 21 40 40 H 1.08001 * 119.99749 * 180.23529 * 24 23 22 41 41 H 1.07998 * 119.99926 * 179.72342 * 25 24 23 42 42 H 1.07994 * 119.99934 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.99770 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3144 0.0048 5 6 1.8766 3.5097 -0.0007 6 6 3.2505 3.6493 -0.0061 7 6 4.0482 2.5136 -0.0062 8 6 3.4321 1.2740 -0.0003 9 6 4.2557 0.0120 -0.0007 10 6 4.4203 -0.4800 -1.4156 11 8 3.9186 0.1341 -2.3334 12 7 5.1301 -1.5989 -1.6616 13 6 5.6977 -2.2927 -0.6243 14 1 6.0786 -1.7621 0.2358 15 6 5.7829 -3.6785 -0.6796 16 7 4.9624 -4.3570 -1.4496 17 14 7.0639 -4.5769 0.3410 18 1 6.4915 -4.9132 1.6694 19 1 7.4650 -5.8255 -0.3556 20 1 8.2533 -3.7062 0.5206 21 6 5.2952 -2.0738 -3.0377 22 6 6.4856 -1.3946 -3.6641 23 6 6.3081 -0.2613 -4.4354 24 6 7.4006 0.3646 -5.0060 25 6 8.6696 -0.1490 -4.8140 26 6 8.8466 -1.2855 -4.0472 27 6 7.7547 -1.9080 -3.4719 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.2513 4.3902 -0.0006 32 1 3.6993 4.6316 -0.0103 33 1 5.1251 2.5951 -0.0108 34 1 3.7520 -0.7508 0.5930 35 1 5.2362 0.2179 0.4288 36 1 5.0221 -5.3244 -1.4885 37 1 5.4529 -3.1524 -3.0333 38 1 4.3992 -1.8400 -3.6127 39 1 5.3163 0.1377 -4.5886 40 1 7.2623 1.2523 -5.6055 41 1 9.5227 0.3374 -5.2636 42 1 9.8380 -1.6869 -3.8975 43 1 7.8929 -2.7961 -2.8731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176237916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:49 Heat of formation + Delta-G solvation = -20.490625 kcal Electronic energy + Delta-G solvation = -27728.580263 eV Core-core repulsion = 23931.742908 eV Total energy + Delta-G solvation = -3796.837355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70565 -40.63864 -39.48421 -38.76084 -36.73039 -34.54722 -33.67026 -32.54458 -32.01025 -31.68969 -29.16029 -28.11928 -27.42868 -26.10607 -23.90467 -23.45600 -23.33016 -22.10163 -20.92564 -19.32238 -18.77060 -18.05502 -17.93644 -17.34186 -16.86550 -16.71137 -16.37255 -16.03583 -15.95655 -15.68029 -15.45433 -15.11807 -15.02578 -14.56663 -14.21182 -14.11921 -13.94147 -13.90492 -13.57143 -13.18060 -13.09184 -13.00526 -12.85958 -12.62438 -12.54526 -12.25115 -12.13795 -12.10358 -11.89262 -11.72761 -11.06941 -10.77371 -10.58087 -10.33181 -9.74253 -9.57360 -9.48072 -9.26582 -8.29592 -6.00597 0.23613 0.38903 0.52393 0.58069 1.41509 1.48692 1.59694 2.07803 2.24712 2.33376 2.75050 2.91376 3.10531 3.31759 3.43760 3.94149 4.00747 4.05215 4.12638 4.15795 4.24015 4.35716 4.37688 4.38984 4.40912 4.45620 4.59238 4.62955 4.66988 4.74631 4.75009 4.87053 5.01495 5.14962 5.16847 5.23846 5.29330 5.35233 5.50363 5.60886 5.65157 5.66487 5.90057 6.03440 6.21922 6.34887 6.43001 6.91904 7.15100 7.62207 8.06451 8.73772 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.004902 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.485277 B = 5710.391908 C = 7350.803956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.329 6.329 3 C 0.307 3.693 4 N -0.557 5.557 5 C 0.120 3.880 6 C -0.199 4.199 7 C -0.044 4.044 8 C -0.144 4.144 9 C -0.060 4.060 10 C 0.469 3.531 11 O -0.624 6.624 12 N -0.442 5.442 13 C -0.351 4.351 14 H 0.098 0.902 15 C 0.008 3.992 16 N -0.890 5.890 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.257 1.257 21 C 0.155 3.845 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.195 0.805 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.272 0.728 37 H 0.097 0.903 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 10.842 1.659 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.236 6.236 3 C 0.129 3.871 4 N -0.281 5.281 5 C -0.035 4.035 6 C -0.219 4.219 7 C -0.069 4.069 8 C -0.147 4.147 9 C -0.100 4.100 10 C 0.259 3.741 11 O -0.511 6.511 12 N -0.159 5.159 13 C -0.478 4.478 14 H 0.115 0.885 15 C -0.195 4.195 16 N -0.527 5.527 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.181 1.181 21 C 0.031 3.969 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.211 0.789 32 H 0.193 0.807 33 H 0.171 0.829 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.753 10.539 1.170 10.748 hybrid contribution 0.537 -0.975 0.351 1.167 sum 2.290 9.564 1.521 9.951 Atomic orbital electron populations 1.22952 0.76344 1.03902 1.02127 1.86292 1.24142 1.25419 1.87738 1.19793 0.89351 0.84904 0.93030 1.67310 1.41195 0.99344 1.20272 1.23048 0.94032 0.93624 0.92783 1.22299 0.94520 1.00372 1.04686 1.21622 1.01653 0.90539 0.93134 1.19696 0.91210 0.96758 1.07062 1.20066 1.00467 0.94580 0.94913 1.20802 0.79035 0.83251 0.90964 1.90471 1.52842 1.60278 1.47556 1.43573 1.44673 1.22424 1.05261 1.19690 1.38185 0.89530 1.00408 0.88452 1.26075 0.97781 0.97238 0.98432 1.70056 1.33995 1.08172 1.40458 0.85268 0.79224 0.77781 0.78221 1.19851 1.20596 1.18123 1.20170 0.93304 1.00425 0.82985 1.20417 0.95857 0.96596 0.97260 1.21153 0.99227 0.95463 0.98123 1.21365 0.92520 1.00372 1.00250 1.21439 0.97445 0.96223 0.98859 1.21417 0.98758 0.96419 0.97707 1.21099 0.92399 1.00313 0.99340 0.91436 0.93115 0.87316 0.78871 0.80732 0.82939 0.89576 0.87846 0.91854 0.88518 0.95051 0.88216 0.84113 0.82722 0.83574 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.38 113.37 1.18 2.47 16 2 O -0.33 -13.60 9.64 -89.96 -0.87 -14.47 16 3 C 0.31 12.15 7.47 84.78 0.63 12.79 16 4 N -0.56 -18.97 9.22 -308.93 -2.85 -21.82 16 5 C 0.12 3.12 11.18 84.64 0.95 4.06 16 6 C -0.20 -4.81 10.11 22.37 0.23 -4.59 16 7 C -0.04 -1.35 9.83 22.44 0.22 -1.13 16 8 C -0.14 -5.57 4.40 -19.67 -0.09 -5.65 16 9 C -0.06 -2.55 4.23 29.10 0.12 -2.43 16 10 C 0.47 23.80 7.60 87.66 0.67 24.47 16 11 O -0.62 -34.36 15.32 -3.05 -0.05 -34.41 16 12 N -0.44 -22.85 2.53 -639.60 -1.62 -24.47 16 13 C -0.35 -17.66 8.68 84.04 0.73 -16.93 16 14 H 0.10 4.62 6.99 -2.91 -0.02 4.60 16 15 C 0.01 0.39 4.91 84.93 0.42 0.81 16 16 N -0.89 -47.37 11.40 21.66 0.25 -47.13 16 17 Si 0.97 38.69 29.61 68.60 2.03 40.72 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 C 0.15 7.89 5.07 85.63 0.43 8.32 16 22 C -0.10 -4.42 5.44 -19.87 -0.11 -4.53 16 23 C -0.12 -4.92 9.61 22.27 0.21 -4.71 16 24 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 25 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 26 C -0.13 -3.86 10.05 22.27 0.22 -3.63 16 27 C -0.11 -4.43 9.72 22.27 0.22 -4.21 16 28 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.05 1.58 8.11 -2.38 -0.02 1.56 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 34 H 0.09 3.86 7.67 -2.39 -0.02 3.84 16 35 H 0.10 3.90 7.56 -2.39 -0.02 3.88 16 36 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 37 H 0.10 5.21 5.38 -2.38 -0.01 5.19 16 38 H 0.03 1.71 7.43 -2.39 -0.02 1.69 16 39 H 0.10 4.42 7.78 -2.91 -0.02 4.40 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -70.31 369.70 4.40 -65.91 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 1.02 Total: 37.54 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.48 Total: -1.89 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -4.22 Total: -93.41 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.91 Total: -48.87 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -70.31 4.40 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176237916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.424 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds