Wall clock time and date at job start Tue Mar 31 2020 14:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 117.00108 * 2 1 4 4 C 1.38923 * 119.68438 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.10813 * 179.97438 * 4 3 2 6 6 C 1.38823 * 118.48933 * 0.02562 * 5 4 3 7 7 C 1.50708 * 120.35759 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47161 * 89.99550 * 7 6 5 9 9 O 1.21302 * 119.99958 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99748 * 359.97438 * 10 8 7 12 12 H 1.07996 * 119.99915 * 322.30152 * 11 10 8 13 13 C 1.38948 * 119.99868 * 142.30035 * 11 10 8 14 14 N 1.31415 * 119.99911 * 159.49052 * 13 11 10 15 15 Si 1.86798 * 120.00051 * 339.49812 * 13 11 10 16 16 H 1.48496 * 109.47452 * 94.96253 * 15 13 11 17 17 H 1.48507 * 109.47209 * 214.96306 * 15 13 11 18 18 H 1.48495 * 109.47181 * 334.95998 * 15 13 11 19 19 C 1.46495 * 120.00332 * 180.02562 * 10 8 7 20 20 C 1.50708 * 109.47355 * 84.48048 * 19 10 8 21 21 C 1.38232 * 119.99418 * 271.58730 * 20 19 10 22 22 C 1.38238 * 119.99494 * 179.76713 * 21 20 19 23 23 C 1.38233 * 120.00172 * 0.49765 * 22 21 20 24 24 C 1.38238 * 119.99828 * 359.75575 * 23 22 21 25 25 C 1.38230 * 120.00012 * 91.85380 * 20 19 10 26 26 C 1.38049 * 119.29260 * 359.97438 * 6 5 4 27 27 N 1.31969 * 120.82775 * 0.02759 * 26 6 5 28 28 H 1.09001 * 109.46711 * 300.00031 * 1 2 3 29 29 H 1.08996 * 109.47595 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.44400 * 0.27617 * 4 3 2 32 32 H 1.08008 * 120.75318 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47137 * 209.99673 * 7 6 5 34 34 H 1.09000 * 109.46888 * 329.99663 * 7 6 5 35 35 H 0.97006 * 119.99664 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.47263 * 204.47898 * 19 10 8 37 37 H 1.08994 * 109.47071 * 324.48018 * 19 10 8 38 38 H 1.08002 * 120.00830 * 359.97438 * 21 20 19 39 39 H 1.07999 * 119.99950 * 180.22879 * 22 21 20 40 40 H 1.07997 * 120.00489 * 179.72530 * 23 22 21 41 41 H 1.08003 * 120.00141 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99916 * 0.02562 * 25 20 19 43 43 H 1.07990 * 119.58772 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0016 8 6 4.0841 5.4762 -1.4228 9 8 3.7551 4.7592 -2.3442 10 7 4.6350 6.6811 -1.6701 11 6 5.0064 7.4918 -0.6286 12 1 4.3990 7.5376 0.2631 13 6 6.1642 8.2544 -0.7206 14 7 6.3224 9.3048 0.0532 15 14 7.4959 7.7867 -1.9442 16 1 7.3099 8.5602 -3.1981 17 1 8.8291 8.0938 -1.3664 18 1 7.4077 6.3344 -2.2408 19 6 4.8359 7.1251 -3.0516 20 6 3.5651 7.7486 -3.5689 21 6 2.6045 6.9595 -4.1733 22 6 1.4367 7.5307 -4.6434 23 6 1.2341 8.8923 -4.5184 24 6 2.1971 9.6822 -3.9186 25 6 3.3626 9.1102 -3.4438 26 6 1.8771 3.5097 0.0000 27 7 1.3187 2.3140 0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3695 -0.0054 32 1 5.1255 2.5946 -0.0019 33 1 3.2190 5.7203 0.5127 34 1 4.8379 4.9805 0.5112 35 1 7.1306 9.8373 -0.0113 36 1 5.6404 7.8599 -3.0838 37 1 5.1002 6.2697 -3.6733 38 1 2.7647 5.8963 -4.2753 39 1 0.6845 6.9137 -5.1124 40 1 0.3237 9.3393 -4.8896 41 1 2.0391 10.7461 -3.8212 42 1 4.1153 9.7273 -2.9758 43 1 1.2518 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177879108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:53 Heat of formation + Delta-G solvation = 1.635601 kcal Electronic energy + Delta-G solvation = -27199.423151 eV Core-core repulsion = 23403.545261 eV Total energy + Delta-G solvation = -3795.877889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45898 -39.35715 -38.29693 -37.57267 -35.06277 -32.86430 -32.25097 -31.71179 -30.90554 -30.37348 -28.05247 -26.79685 -25.60357 -24.63874 -23.24459 -22.03310 -21.97106 -20.90864 -19.06491 -18.24950 -17.28700 -16.90591 -16.50102 -15.94234 -15.83227 -15.59670 -14.86574 -14.58411 -14.39868 -14.35782 -14.28713 -13.90012 -13.78882 -13.14217 -12.92564 -12.86426 -12.72660 -12.69161 -12.32541 -12.13289 -11.96010 -11.61540 -11.49762 -11.17685 -11.06058 -10.99603 -10.80929 -10.51459 -10.25676 -10.02600 -9.62221 -9.40665 -9.32659 -8.81251 -8.41259 -8.27647 -8.05632 -7.90958 -6.58661 -4.18942 1.40417 1.53694 1.81534 1.91488 2.96036 3.13943 3.20151 3.21075 3.63999 3.93363 4.01988 4.18172 4.52660 4.62698 4.85731 5.11204 5.20462 5.24266 5.29794 5.31186 5.34402 5.34836 5.46024 5.46466 5.62199 5.67548 5.79100 5.81311 5.96753 6.05900 6.09982 6.15148 6.19451 6.27880 6.32360 6.49568 6.58482 6.65327 6.68234 6.95618 6.95989 7.21315 7.25409 7.37598 7.51140 7.96648 8.06204 8.13537 8.84535 9.23631 9.58158 10.51548 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.004124 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.231721 B = 6788.221721 C = 8463.425174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.303 3.697 4 C -0.189 4.189 5 C -0.031 4.031 6 C -0.130 4.130 7 C -0.076 4.076 8 C 0.485 3.515 9 O -0.588 6.588 10 N -0.458 5.458 11 C -0.345 4.345 12 H 0.106 0.894 13 C 0.070 3.930 14 N -0.855 5.855 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.260 1.260 19 C 0.137 3.863 20 C -0.085 4.085 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.094 4.094 26 C 0.148 3.852 27 N -0.540 5.540 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.276 0.724 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -7.537 -1.827 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.222 6.222 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.116 4.116 8 C 0.275 3.725 9 O -0.473 6.473 10 N -0.178 5.178 11 C -0.471 4.471 12 H 0.123 0.877 13 C -0.138 4.138 14 N -0.490 5.490 15 Si 0.697 3.303 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.184 1.184 19 C 0.015 3.985 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.112 4.112 26 C -0.007 4.007 27 N -0.263 5.263 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.275 -8.067 -2.197 11.083 hybrid contribution 1.410 0.373 -0.483 1.536 sum -5.865 -7.694 -2.680 10.038 Atomic orbital electron populations 1.22774 0.77783 1.02369 1.02380 1.86194 1.22506 1.25005 1.88456 1.19757 0.89391 0.84563 0.93829 1.20945 0.91867 0.99247 1.08866 1.21278 1.00488 0.90738 0.93109 1.20436 0.94528 0.95972 1.02370 1.20304 1.02715 0.92008 0.96569 1.20233 0.81176 0.80787 0.90294 1.90551 1.55414 1.55044 1.46277 1.43722 1.55762 1.14075 1.04258 1.19089 1.07949 1.22612 0.97497 0.87694 1.25311 0.97277 0.94547 0.96654 1.69755 1.27468 1.12872 1.38921 0.87060 0.81727 0.80614 0.80926 1.19978 1.21293 1.18403 1.20624 0.93976 0.98513 0.85415 1.20275 0.97368 0.93681 0.97261 1.21261 0.93229 1.00241 0.96882 1.21055 0.97620 0.94948 1.01444 1.21023 0.98917 0.94100 1.00684 1.21057 0.94470 0.99440 0.99839 1.21151 0.97544 0.94786 0.97761 1.22184 0.92366 0.93239 0.92895 1.67253 1.40857 0.98774 1.19395 0.92527 0.92463 0.89089 0.84594 0.84348 0.88578 0.87989 0.91368 0.90633 0.90742 0.85411 0.86841 0.86928 0.86635 0.85855 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.31 -4.47 10.48 -18.73 -0.20 -4.66 16 3 C 0.30 4.79 7.49 -17.12 -0.13 4.66 16 4 C -0.19 -2.77 10.04 -39.28 -0.39 -3.16 16 5 C -0.03 -0.47 9.85 -39.31 -0.39 -0.85 16 6 C -0.13 -2.17 4.39 -104.47 -0.46 -2.63 16 7 C -0.08 -1.34 4.55 -29.03 -0.13 -1.47 16 8 C 0.49 10.36 7.58 -10.99 -0.08 10.28 16 9 O -0.59 -13.50 14.31 5.54 0.08 -13.42 16 10 N -0.46 -10.26 2.18 -116.09 -0.25 -10.51 16 11 C -0.34 -8.25 9.07 -14.93 -0.14 -8.38 16 12 H 0.11 2.62 7.23 -52.49 -0.38 2.24 16 13 C 0.07 1.72 5.30 -17.47 -0.09 1.62 16 14 N -0.86 -22.11 13.96 55.50 0.77 -21.33 16 15 Si 0.87 19.21 24.94 -169.99 -4.24 14.97 16 16 H -0.27 -5.85 6.68 56.52 0.38 -5.47 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.14 2.94 4.08 -5.19 -0.02 2.92 16 20 C -0.08 -1.69 5.42 -104.62 -0.57 -2.26 16 21 C -0.10 -1.83 9.34 -39.58 -0.37 -2.20 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 25 C -0.09 -1.78 9.69 -39.59 -0.38 -2.16 16 26 C 0.15 2.44 10.85 -17.56 -0.19 2.25 16 27 N -0.54 -8.91 9.22 -13.33 -0.12 -9.03 16 28 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.10 1.62 7.62 -51.93 -0.40 1.23 16 34 H 0.10 1.73 8.05 -51.93 -0.42 1.32 16 35 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.08 1.65 3.36 -51.93 -0.17 1.47 16 37 H 0.07 1.58 7.55 -51.93 -0.39 1.19 16 38 H 0.13 2.50 7.03 -52.49 -0.37 2.13 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 42 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 43 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -28.67 364.04 -7.47 -36.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.51 Total: 9.68 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.49 Total: -7.31 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.40 Total: -40.87 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.12 Total: -18.08 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.24 Total: 14.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.67 -7.47 -36.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177879108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.777 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds