Wall clock time and date at job start Tue Mar 31 2020 14:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 117.00108 * 2 1 4 4 C 1.38923 * 119.68438 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.10813 * 179.97438 * 4 3 2 6 6 C 1.38823 * 118.48933 * 0.02562 * 5 4 3 7 7 C 1.50708 * 120.35759 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47161 * 89.99550 * 7 6 5 9 9 O 1.21302 * 119.99958 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99748 * 359.97438 * 10 8 7 12 12 H 1.07996 * 119.99915 * 322.30152 * 11 10 8 13 13 C 1.38948 * 119.99868 * 142.30035 * 11 10 8 14 14 N 1.31415 * 119.99911 * 159.49052 * 13 11 10 15 15 Si 1.86798 * 120.00051 * 339.49812 * 13 11 10 16 16 H 1.48496 * 109.47452 * 94.96253 * 15 13 11 17 17 H 1.48507 * 109.47209 * 214.96306 * 15 13 11 18 18 H 1.48495 * 109.47181 * 334.95998 * 15 13 11 19 19 C 1.46495 * 120.00332 * 180.02562 * 10 8 7 20 20 C 1.50708 * 109.47355 * 84.48048 * 19 10 8 21 21 C 1.38232 * 119.99418 * 271.58730 * 20 19 10 22 22 C 1.38238 * 119.99494 * 179.76713 * 21 20 19 23 23 C 1.38233 * 120.00172 * 0.49765 * 22 21 20 24 24 C 1.38238 * 119.99828 * 359.75575 * 23 22 21 25 25 C 1.38230 * 120.00012 * 91.85380 * 20 19 10 26 26 C 1.38049 * 119.29260 * 359.97438 * 6 5 4 27 27 N 1.31969 * 120.82775 * 0.02759 * 26 6 5 28 28 H 1.09001 * 109.46711 * 300.00031 * 1 2 3 29 29 H 1.08996 * 109.47595 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.44400 * 0.27617 * 4 3 2 32 32 H 1.08008 * 120.75318 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47137 * 209.99673 * 7 6 5 34 34 H 1.09000 * 109.46888 * 329.99663 * 7 6 5 35 35 H 0.97006 * 119.99664 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.47263 * 204.47898 * 19 10 8 37 37 H 1.08994 * 109.47071 * 324.48018 * 19 10 8 38 38 H 1.08002 * 120.00830 * 359.97438 * 21 20 19 39 39 H 1.07999 * 119.99950 * 180.22879 * 22 21 20 40 40 H 1.07997 * 120.00489 * 179.72530 * 23 22 21 41 41 H 1.08003 * 120.00141 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99916 * 0.02562 * 25 20 19 43 43 H 1.07990 * 119.58772 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0016 8 6 4.0841 5.4762 -1.4228 9 8 3.7551 4.7592 -2.3442 10 7 4.6350 6.6811 -1.6701 11 6 5.0064 7.4918 -0.6286 12 1 4.3990 7.5376 0.2631 13 6 6.1642 8.2544 -0.7206 14 7 6.3224 9.3048 0.0532 15 14 7.4959 7.7867 -1.9442 16 1 7.3099 8.5602 -3.1981 17 1 8.8291 8.0938 -1.3664 18 1 7.4077 6.3344 -2.2408 19 6 4.8359 7.1251 -3.0516 20 6 3.5651 7.7486 -3.5689 21 6 2.6045 6.9595 -4.1733 22 6 1.4367 7.5307 -4.6434 23 6 1.2341 8.8923 -4.5184 24 6 2.1971 9.6822 -3.9186 25 6 3.3626 9.1102 -3.4438 26 6 1.8771 3.5097 0.0000 27 7 1.3187 2.3140 0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3695 -0.0054 32 1 5.1255 2.5946 -0.0019 33 1 3.2190 5.7203 0.5127 34 1 4.8379 4.9805 0.5112 35 1 7.1306 9.8373 -0.0113 36 1 5.6404 7.8599 -3.0838 37 1 5.1002 6.2697 -3.6733 38 1 2.7647 5.8963 -4.2753 39 1 0.6845 6.9137 -5.1124 40 1 0.3237 9.3393 -4.8896 41 1 2.0391 10.7461 -3.8212 42 1 4.1153 9.7273 -2.9758 43 1 1.2518 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177879108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:52 Heat of formation + Delta-G solvation = -14.464483 kcal Electronic energy + Delta-G solvation = -27200.121303 eV Core-core repulsion = 23403.545261 eV Total energy + Delta-G solvation = -3796.576042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69216 -40.90491 -39.68056 -38.79930 -36.80145 -34.26402 -33.98834 -33.00570 -32.34634 -31.72840 -29.26630 -27.98321 -27.24382 -26.29290 -24.42473 -23.38364 -23.26965 -22.30817 -20.83018 -19.37284 -18.94260 -18.18235 -18.03077 -17.40434 -17.29565 -16.93552 -16.34746 -15.94137 -15.80297 -15.77300 -15.55774 -15.33147 -15.13905 -14.56711 -14.43759 -14.21537 -14.16470 -14.03992 -13.87111 -13.61289 -13.25359 -13.05944 -12.83465 -12.69384 -12.52908 -12.34254 -12.09935 -11.99014 -11.95358 -11.68827 -11.13927 -10.83962 -10.63085 -10.50728 -9.78587 -9.73515 -9.64017 -9.31621 -8.49572 -6.10471 0.18325 0.31104 0.45046 0.54720 1.18528 1.32376 1.41119 1.92905 2.15870 2.17875 2.53081 2.80590 3.02014 3.13274 3.36732 3.84438 3.87906 3.96498 4.04631 4.08122 4.18045 4.23670 4.27772 4.32945 4.40498 4.43925 4.48518 4.55456 4.60568 4.73261 4.74718 4.79571 4.83127 4.89530 4.98899 5.13246 5.20964 5.38617 5.41410 5.48519 5.61586 5.62925 5.81166 6.09395 6.16699 6.24846 6.26335 6.84107 6.97881 7.43507 7.80983 8.63947 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.004124 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.231721 B = 6788.221721 C = 8463.425174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.293 3.707 4 C -0.187 4.187 5 C -0.034 4.034 6 C -0.145 4.145 7 C -0.067 4.067 8 C 0.482 3.518 9 O -0.604 6.604 10 N -0.467 5.467 11 C -0.336 4.336 12 H 0.090 0.910 13 C 0.040 3.960 14 N -0.891 5.891 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.136 3.864 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.114 4.114 26 C 0.139 3.861 27 N -0.551 5.551 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.279 0.721 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 -8.214 -2.665 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.060 4.060 6 C -0.147 4.147 7 C -0.107 4.107 8 C 0.273 3.727 9 O -0.489 6.489 10 N -0.188 5.188 11 C -0.463 4.463 12 H 0.107 0.893 13 C -0.165 4.165 14 N -0.527 5.527 15 Si 0.739 3.261 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.014 3.986 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.133 4.133 26 C -0.016 4.016 27 N -0.274 5.274 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.125 0.875 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.610 -8.754 -3.041 12.650 hybrid contribution 1.676 0.507 -0.260 1.770 sum -6.934 -8.247 -3.301 11.269 Atomic orbital electron populations 1.23025 0.76125 1.04572 1.02000 1.86196 1.24175 1.24128 1.88156 1.20094 0.90113 0.84888 0.93486 1.21237 0.91791 0.99968 1.07740 1.21537 1.01365 0.90611 0.92462 1.20386 0.94840 0.95667 1.03856 1.20223 1.03296 0.92946 0.94195 1.20822 0.80025 0.80219 0.91617 1.90533 1.55757 1.55361 1.47288 1.43823 1.56222 1.14453 1.04307 1.18959 1.07589 1.22319 0.97453 0.89283 1.25698 0.98529 0.94425 0.97850 1.69808 1.28229 1.13954 1.40736 0.86365 0.79935 0.79959 0.79826 1.19191 1.21036 1.18980 1.20592 0.94956 0.98103 0.84977 1.20192 0.97249 0.94370 0.98891 1.21208 0.94355 0.99494 0.98022 1.21395 0.96956 0.95969 1.00380 1.21463 0.99736 0.93481 0.98926 1.21392 0.93381 1.01050 0.98643 1.21154 0.98735 0.94324 0.99102 1.22328 0.92545 0.93664 0.93081 1.67262 1.41237 0.98968 1.19958 0.92569 0.93155 0.85648 0.82024 0.82712 0.88107 0.87367 0.91094 0.91441 0.91334 0.86930 0.84072 0.82878 0.83893 0.87457 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.93 16 2 O -0.32 -8.55 10.48 -89.92 -0.94 -9.49 16 3 C 0.29 8.91 7.49 84.79 0.63 9.55 16 4 C -0.19 -5.19 10.04 22.47 0.23 -4.96 16 5 C -0.03 -1.01 9.85 22.44 0.22 -0.79 16 6 C -0.14 -4.76 4.39 -19.77 -0.09 -4.85 16 7 C -0.07 -2.37 4.55 29.10 0.13 -2.24 16 8 C 0.48 20.82 7.58 87.66 0.66 21.49 16 9 O -0.60 -27.98 14.31 -3.10 -0.04 -28.03 16 10 N -0.47 -21.31 2.18 -639.60 -1.39 -22.70 16 11 C -0.34 -16.42 9.07 84.04 0.76 -15.65 16 12 H 0.09 4.58 7.23 -2.91 -0.02 4.55 16 13 C 0.04 1.99 5.30 84.93 0.45 2.44 16 14 N -0.89 -46.84 13.96 21.66 0.30 -46.54 16 15 Si 0.91 40.03 24.94 68.60 1.71 41.74 16 16 H -0.27 -11.22 6.68 99.48 0.66 -10.56 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 C 0.14 5.97 4.08 85.64 0.35 6.31 16 20 C -0.11 -4.27 5.42 -19.87 -0.11 -4.38 16 21 C -0.11 -4.17 9.34 22.27 0.21 -3.96 16 22 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 23 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 24 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 25 C -0.11 -4.33 9.69 22.27 0.22 -4.11 16 26 C 0.14 4.52 10.85 84.63 0.92 5.44 16 27 N -0.55 -17.82 9.22 -308.96 -2.85 -20.66 16 28 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 29 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.10 3.46 7.62 -2.39 -0.02 3.44 16 34 H 0.11 3.68 8.05 -2.39 -0.02 3.66 16 35 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 36 H 0.07 3.01 3.36 -2.38 -0.01 3.00 16 37 H 0.07 3.00 7.55 -2.39 -0.02 2.98 16 38 H 0.11 4.47 7.03 -2.91 -0.02 4.45 16 39 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.16 4.82 8.06 -2.92 -0.02 4.80 16 Total: -1.00 -61.87 364.04 4.20 -57.67 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.98 Total: 32.06 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 6.44 Total: -4.04 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -3.94 Total: -89.91 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.99 Total: -37.52 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.71 Total: 41.74 kcal Total: -61.87 4.20 -57.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177879108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.204 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds