Wall clock time and date at job start Tue Mar 31 2020 15:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47467 * 37.44731 * 3 2 1 5 5 N 1.46499 * 109.47017 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99575 * 269.99479 * 5 4 3 7 7 C 1.50705 * 109.47313 * 270.00277 * 6 5 4 8 8 H 1.07998 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99736 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00285 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47122 * 89.99734 * 11 9 7 13 13 H 1.48496 * 109.47151 * 209.99888 * 11 9 7 14 14 H 1.48507 * 109.47058 * 330.00016 * 11 9 7 15 15 C 1.34770 * 120.00119 * 89.99839 * 5 4 3 16 16 O 1.21284 * 119.99848 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00317 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.47423 * 179.97438 * 17 15 5 19 19 N 1.46499 * 109.47021 * 179.97438 * 18 17 15 20 20 N 1.39877 * 125.46040 * 90.02657 * 19 18 17 21 21 C 1.30244 * 110.08388 * 179.97438 * 20 19 18 22 22 C 1.45927 * 107.78403 * 0.02562 * 21 20 19 23 23 C 1.39943 * 134.02826 * 180.02562 * 22 21 20 24 24 C 1.36468 * 119.63407 * 180.02562 * 23 22 21 25 25 C 1.38965 * 120.62898 * 359.97438 * 24 23 22 26 26 C 1.36589 * 120.81743 * 0.03018 * 25 24 23 27 27 C 1.37034 * 125.46203 * 269.97945 * 19 18 17 28 28 H 1.08998 * 109.47262 * 277.44014 * 3 2 1 29 29 H 1.09009 * 109.46936 * 157.44595 * 3 2 1 30 30 H 1.08995 * 109.47036 * 59.99679 * 4 3 2 31 31 H 1.09002 * 109.46571 * 299.99720 * 4 3 2 32 32 H 1.09004 * 109.47428 * 30.00485 * 6 5 4 33 33 H 1.09001 * 109.46950 * 150.00526 * 6 5 4 34 34 H 0.96995 * 120.00156 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.47231 * 59.99738 * 17 15 5 36 36 H 1.08998 * 109.47153 * 300.00228 * 17 15 5 37 37 H 1.09000 * 109.46656 * 59.99857 * 18 17 15 38 38 H 1.09001 * 109.46659 * 299.99712 * 18 17 15 39 39 H 1.07997 * 126.10328 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.18455 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.68394 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.59015 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.07475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1443 -0.8771 5 7 4.5836 -1.1432 -0.8775 6 6 5.3151 -0.3714 -1.8852 7 6 5.5665 -1.2350 -3.0944 8 1 5.2168 -2.2566 -3.1105 9 6 6.2440 -0.7210 -4.1798 10 7 6.4638 -1.4748 -5.2349 11 14 6.8508 1.0454 -4.1511 12 1 8.2243 1.0879 -3.5880 13 1 6.8658 1.5861 -5.5340 14 1 5.9447 1.8664 -3.3083 15 6 5.2583 -1.8522 0.0490 16 8 6.4711 -1.8516 0.0483 17 6 4.5058 -2.6457 1.0859 18 6 5.5009 -3.3524 2.0085 19 7 4.7693 -4.1233 3.0168 20 7 4.3637 -5.4553 2.8833 21 6 3.7371 -5.8419 3.9576 22 6 3.7067 -4.7160 4.8854 23 6 3.1852 -4.5284 6.1704 24 6 3.3262 -3.3185 6.7859 25 6 3.9828 -2.2724 6.1489 26 6 4.5002 -2.4312 4.8948 27 6 4.3734 -3.6553 4.2424 28 1 2.9714 -0.1322 1.0190 29 1 2.9709 0.9500 -0.3942 30 1 2.7552 -1.0113 -1.8960 31 1 2.7557 -2.0936 -0.4828 32 1 4.7253 0.4979 -2.1759 33 1 6.2674 -0.0420 -1.4697 34 1 6.9401 -1.1132 -5.9985 35 1 3.8792 -3.3879 0.5912 36 1 3.8791 -1.9743 1.6729 37 1 6.1278 -2.6105 2.5031 38 1 6.1271 -4.0239 1.4211 39 1 3.3148 -6.8207 4.1305 40 1 2.6740 -5.3366 6.6723 41 1 2.9237 -3.1727 7.7774 42 1 4.0845 -1.3218 6.6514 43 1 5.0078 -1.6100 4.4108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180062023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:33 Heat of formation + Delta-G solvation = 83.639407 kcal Electronic energy + Delta-G solvation = -26538.856373 eV Core-core repulsion = 22778.827187 eV Total energy + Delta-G solvation = -3760.029187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42721 -39.57040 -37.41704 -36.99134 -35.50881 -34.39503 -32.86147 -31.45661 -31.07844 -30.04153 -29.42389 -27.82775 -24.78513 -24.06114 -23.24065 -22.26961 -22.01947 -20.52909 -18.65899 -17.86142 -17.48261 -17.06531 -16.89110 -16.39478 -15.95288 -15.43769 -15.33957 -15.02900 -14.78059 -14.49560 -14.15762 -14.08312 -13.80951 -13.63752 -13.30785 -12.87907 -12.77515 -12.55176 -12.50414 -12.31442 -12.15901 -11.94533 -11.84468 -11.63682 -11.41294 -11.25769 -11.12440 -10.94842 -10.82969 -10.62102 -10.28007 -10.24338 -9.65739 -9.30471 -8.87417 -8.66983 -8.06449 -8.02366 -6.16212 -4.16519 0.76304 1.31797 2.20469 2.36297 2.62665 2.72242 3.05998 3.22576 3.27717 3.30433 3.47189 3.60316 4.04952 4.29351 4.31753 4.39463 4.59446 4.73825 4.75239 4.82516 4.91271 4.93604 5.02823 5.06585 5.15397 5.17408 5.27094 5.37553 5.43936 5.55578 5.63295 5.68372 5.78433 5.82367 5.96477 6.13972 6.30301 6.31154 6.50501 6.62580 6.78256 6.89733 7.08151 7.48070 7.50019 7.50662 7.94805 8.35638 8.67261 8.87440 9.42652 10.97016 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003110 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.795135 B = 9000.943853 C = 9928.138482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.215 3.785 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.517 3.483 16 O -0.532 6.532 17 C -0.161 4.161 18 C 0.156 3.844 19 N -0.400 5.400 20 N -0.245 5.245 21 C 0.066 3.934 22 C -0.184 4.184 23 C -0.041 4.041 24 C -0.165 4.165 25 C -0.072 4.072 26 C -0.139 4.139 27 C 0.129 3.871 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.195 0.805 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -1.864 22.825 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.094 3.906 7 C -0.572 4.572 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.303 3.697 16 O -0.409 6.409 17 C -0.203 4.203 18 C 0.034 3.966 19 N -0.187 5.187 20 N -0.056 5.056 21 C -0.131 4.131 22 C -0.192 4.192 23 C -0.061 4.061 24 C -0.184 4.184 25 C -0.093 4.093 26 C -0.161 4.161 27 C 0.014 3.986 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.212 0.788 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.218 -2.118 21.284 22.574 hybrid contribution 0.432 1.122 0.452 1.284 sum -6.786 -0.997 21.736 22.792 Atomic orbital electron populations 1.81224 1.12977 1.08677 1.08834 1.29023 0.95044 0.93204 0.93102 1.19869 0.81602 1.03830 1.03824 1.21358 0.81618 0.96670 1.01395 1.47865 1.05047 1.48512 1.30561 1.19754 0.92532 0.91416 0.86851 1.21293 1.37448 1.00245 0.98215 0.90642 1.24863 0.95171 0.97683 0.95218 1.69891 1.41133 1.36402 1.05826 0.86866 0.80145 0.85151 0.77589 1.19870 1.21078 1.18983 1.20036 0.87903 0.79925 0.81872 1.90716 1.13634 1.62887 1.73686 1.22142 0.99898 1.00690 0.97526 1.21381 0.92241 0.94630 0.88300 1.48518 1.49445 1.08073 1.12700 1.76679 1.13520 0.93016 1.22416 1.25083 0.98927 0.99032 0.90107 1.19964 1.07771 0.94121 0.97385 1.20334 0.96463 0.97324 0.92011 1.20650 1.03409 0.93500 1.00858 1.20723 0.95815 0.99002 0.93742 1.19895 1.05280 0.94839 0.96085 1.18885 0.97068 0.95489 0.87139 0.87610 0.86589 0.88358 0.90268 0.94897 0.94161 0.92449 0.88182 0.89001 0.88222 0.87646 0.78831 0.85637 0.85831 0.85472 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.35 18.54 42.16 0.78 -5.57 16 2 C 0.21 2.49 15.43 -20.76 -0.32 2.17 16 3 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 4 C 0.12 1.46 5.17 -4.04 -0.02 1.44 16 5 N -0.59 -10.02 2.46 -175.06 -0.43 -10.45 16 6 C 0.21 4.59 4.23 -5.19 -0.02 4.57 16 7 C -0.53 -14.24 9.94 -34.44 -0.34 -14.58 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 11 Si 0.88 20.31 27.47 -169.99 -4.67 15.65 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 15 C 0.52 8.71 7.67 -10.99 -0.08 8.63 16 16 O -0.53 -11.20 15.56 5.55 0.09 -11.11 16 17 C -0.16 -2.00 4.58 -27.88 -0.13 -2.13 16 18 C 0.16 1.98 5.66 -4.04 -0.02 1.96 16 19 N -0.40 -5.10 3.65 -58.71 -0.21 -5.31 16 20 N -0.24 -3.23 12.40 31.87 0.40 -2.83 16 21 C 0.07 0.68 12.28 -15.15 -0.19 0.50 16 22 C -0.18 -1.97 6.37 -105.21 -0.67 -2.64 16 23 C -0.04 -0.34 10.07 -39.58 -0.40 -0.74 16 24 C -0.16 -1.27 9.97 -39.95 -0.40 -1.67 16 25 C -0.07 -0.58 9.96 -39.91 -0.40 -0.98 16 26 C -0.14 -1.35 9.97 -39.79 -0.40 -1.75 16 27 C 0.13 1.51 6.87 -84.18 -0.58 0.93 16 28 H 0.11 0.79 7.22 -51.93 -0.37 0.41 16 29 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 30 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 1.25 7.40 -51.93 -0.38 0.87 16 36 H 0.09 0.91 7.18 -51.93 -0.37 0.54 16 37 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 38 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 39 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -35.11 375.72 -7.43 -42.55 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.58 Total: 0.29 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.24 Total: -2.99 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 1.31 Total: -50.04 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.11 -7.43 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180062023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.185 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds