Wall clock time and date at job start Tue Mar 31 2020 15:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47467 * 37.44731 * 3 2 1 5 5 N 1.46499 * 109.47017 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99575 * 269.99479 * 5 4 3 7 7 C 1.50705 * 109.47313 * 270.00277 * 6 5 4 8 8 H 1.07998 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99736 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00285 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47122 * 89.99734 * 11 9 7 13 13 H 1.48496 * 109.47151 * 209.99888 * 11 9 7 14 14 H 1.48507 * 109.47058 * 330.00016 * 11 9 7 15 15 C 1.34770 * 120.00119 * 89.99839 * 5 4 3 16 16 O 1.21284 * 119.99848 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00317 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.47423 * 179.97438 * 17 15 5 19 19 N 1.46499 * 109.47021 * 179.97438 * 18 17 15 20 20 N 1.39877 * 125.46040 * 90.02657 * 19 18 17 21 21 C 1.30244 * 110.08388 * 179.97438 * 20 19 18 22 22 C 1.45927 * 107.78403 * 0.02562 * 21 20 19 23 23 C 1.39943 * 134.02826 * 180.02562 * 22 21 20 24 24 C 1.36468 * 119.63407 * 180.02562 * 23 22 21 25 25 C 1.38965 * 120.62898 * 359.97438 * 24 23 22 26 26 C 1.36589 * 120.81743 * 0.03018 * 25 24 23 27 27 C 1.37034 * 125.46203 * 269.97945 * 19 18 17 28 28 H 1.08998 * 109.47262 * 277.44014 * 3 2 1 29 29 H 1.09009 * 109.46936 * 157.44595 * 3 2 1 30 30 H 1.08995 * 109.47036 * 59.99679 * 4 3 2 31 31 H 1.09002 * 109.46571 * 299.99720 * 4 3 2 32 32 H 1.09004 * 109.47428 * 30.00485 * 6 5 4 33 33 H 1.09001 * 109.46950 * 150.00526 * 6 5 4 34 34 H 0.96995 * 120.00156 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.47231 * 59.99738 * 17 15 5 36 36 H 1.08998 * 109.47153 * 300.00228 * 17 15 5 37 37 H 1.09000 * 109.46656 * 59.99857 * 18 17 15 38 38 H 1.09001 * 109.46659 * 299.99712 * 18 17 15 39 39 H 1.07997 * 126.10328 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.18455 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.68394 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.59015 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.07475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1443 -0.8771 5 7 4.5836 -1.1432 -0.8775 6 6 5.3151 -0.3714 -1.8852 7 6 5.5665 -1.2350 -3.0944 8 1 5.2168 -2.2566 -3.1105 9 6 6.2440 -0.7210 -4.1798 10 7 6.4638 -1.4748 -5.2349 11 14 6.8508 1.0454 -4.1511 12 1 8.2243 1.0879 -3.5880 13 1 6.8658 1.5861 -5.5340 14 1 5.9447 1.8664 -3.3083 15 6 5.2583 -1.8522 0.0490 16 8 6.4711 -1.8516 0.0483 17 6 4.5058 -2.6457 1.0859 18 6 5.5009 -3.3524 2.0085 19 7 4.7693 -4.1233 3.0168 20 7 4.3637 -5.4553 2.8833 21 6 3.7371 -5.8419 3.9576 22 6 3.7067 -4.7160 4.8854 23 6 3.1852 -4.5284 6.1704 24 6 3.3262 -3.3185 6.7859 25 6 3.9828 -2.2724 6.1489 26 6 4.5002 -2.4312 4.8948 27 6 4.3734 -3.6553 4.2424 28 1 2.9714 -0.1322 1.0190 29 1 2.9709 0.9500 -0.3942 30 1 2.7552 -1.0113 -1.8960 31 1 2.7557 -2.0936 -0.4828 32 1 4.7253 0.4979 -2.1759 33 1 6.2674 -0.0420 -1.4697 34 1 6.9401 -1.1132 -5.9985 35 1 3.8792 -3.3879 0.5912 36 1 3.8791 -1.9743 1.6729 37 1 6.1278 -2.6105 2.5031 38 1 6.1271 -4.0239 1.4211 39 1 3.3148 -6.8207 4.1305 40 1 2.6740 -5.3366 6.6723 41 1 2.9237 -3.1727 7.7774 42 1 4.0845 -1.3218 6.6514 43 1 5.0078 -1.6100 4.4108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180062023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:32 Heat of formation + Delta-G solvation = 61.760254 kcal Electronic energy + Delta-G solvation = -26539.805124 eV Core-core repulsion = 22778.827187 eV Total energy + Delta-G solvation = -3760.977938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19500 -40.91037 -38.14318 -38.01725 -36.82033 -35.40259 -34.75848 -32.52056 -32.14208 -30.77543 -30.45406 -29.28569 -25.92267 -25.27976 -23.92474 -23.75527 -22.80010 -21.36512 -19.97668 -19.20321 -18.61895 -18.35064 -17.79734 -17.45638 -17.24822 -16.54704 -16.21476 -16.03639 -15.83314 -15.70709 -15.28756 -15.00378 -14.77901 -14.62745 -14.33408 -14.29582 -13.98762 -13.77335 -13.65562 -13.58875 -13.23697 -13.03904 -12.76688 -12.71925 -12.63766 -12.43425 -12.34653 -11.98092 -11.89447 -11.87776 -11.69977 -11.65960 -11.05294 -10.78091 -10.71914 -9.59502 -9.52260 -8.80683 -8.28741 -6.34175 0.08634 0.64003 1.33655 1.39201 1.42967 1.50467 1.60329 1.62092 1.77329 1.81691 2.26258 2.36211 2.94372 3.05212 3.11358 3.49330 3.63044 3.67521 3.82063 3.88774 3.99497 4.04238 4.11355 4.20301 4.32560 4.44454 4.49764 4.56069 4.68936 4.75736 4.78178 4.78436 4.86633 4.99764 5.03512 5.06903 5.15729 5.50676 5.51203 5.57811 5.63532 5.69098 5.97001 6.14703 6.26539 6.56104 6.61205 6.69692 6.71165 7.23177 7.36427 8.88387 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003110 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.795135 B = 9000.943853 C = 9928.138482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.243 3.757 3 C -0.036 4.036 4 C 0.111 3.889 5 N -0.591 5.591 6 C 0.222 3.778 7 C -0.536 4.536 8 H 0.026 0.974 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.946 3.054 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.224 1.224 15 C 0.514 3.486 16 O -0.580 6.580 17 C -0.141 4.141 18 C 0.162 3.838 19 N -0.413 5.413 20 N -0.292 5.292 21 C 0.076 3.924 22 C -0.204 4.204 23 C -0.043 4.043 24 C -0.166 4.166 25 C -0.067 4.067 26 C -0.157 4.157 27 C 0.108 3.892 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.227 0.773 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 0.168 26.208 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.075 4.075 3 C -0.077 4.077 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.100 3.900 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.147 1.147 15 C 0.302 3.698 16 O -0.460 6.460 17 C -0.182 4.182 18 C 0.040 3.960 19 N -0.201 5.201 20 N -0.104 5.104 21 C -0.121 4.121 22 C -0.212 4.212 23 C -0.063 4.063 24 C -0.185 4.185 25 C -0.087 4.087 26 C -0.179 4.179 27 C -0.006 4.006 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.707 -0.088 24.711 26.200 hybrid contribution 0.843 0.340 -0.490 1.032 sum -7.865 0.252 24.221 25.467 Atomic orbital electron populations 1.81266 1.14571 1.10299 1.10623 1.29212 0.95074 0.91674 0.91501 1.19852 0.79938 1.03014 1.04900 1.21520 0.78929 0.99088 1.01817 1.47817 1.06725 1.48089 1.29505 1.19454 0.93324 0.91628 0.85589 1.21630 1.36487 0.98912 1.00423 0.95523 1.25901 0.95467 1.03010 0.94668 1.70072 1.42963 1.39089 1.07002 0.85738 0.79837 0.79374 0.78150 1.20258 1.21083 1.14662 1.20739 0.87524 0.79297 0.82198 1.90691 1.15949 1.64351 1.75054 1.22009 0.99429 1.00441 0.96348 1.21170 0.92192 0.94246 0.88416 1.48386 1.50445 1.08126 1.13146 1.76631 1.15656 0.93743 1.24322 1.25714 0.97092 1.00192 0.89149 1.20286 1.08521 0.93945 0.98448 1.20705 0.95932 0.98553 0.91110 1.21068 1.02548 0.92983 1.01900 1.21127 0.94342 1.00266 0.93013 1.20143 1.06225 0.94545 0.96954 1.19283 0.97729 0.96706 0.86908 0.84472 0.84857 0.89635 0.88722 0.91950 0.95181 0.92512 0.88204 0.85555 0.87652 0.90336 0.75636 0.83028 0.83065 0.82846 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.30 18.54 20.00 0.37 -12.93 16 2 C 0.24 4.98 15.43 89.44 1.38 6.36 16 3 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 4 C 0.11 2.60 5.17 86.38 0.45 3.04 16 5 N -0.59 -19.52 2.46 -826.15 -2.03 -21.55 16 6 C 0.22 9.28 4.23 85.63 0.36 9.64 16 7 C -0.54 -29.39 9.94 25.60 0.25 -29.14 16 8 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 9 C 0.01 0.39 5.47 84.65 0.46 0.86 16 10 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 11 Si 0.95 41.62 27.47 68.60 1.88 43.51 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.22 -8.31 6.54 99.48 0.65 -7.66 16 15 C 0.51 17.22 7.67 87.66 0.67 17.90 16 16 O -0.58 -25.00 15.56 -3.04 -0.05 -25.05 16 17 C -0.14 -3.39 4.58 29.85 0.14 -3.26 16 18 C 0.16 4.19 5.66 86.38 0.49 4.68 16 19 N -0.41 -10.50 3.65 -339.64 -1.24 -11.74 16 20 N -0.29 -7.75 12.40 -53.09 -0.66 -8.41 16 21 C 0.08 1.49 12.28 86.92 1.07 2.56 16 22 C -0.20 -4.01 6.37 -20.24 -0.13 -4.13 16 23 C -0.04 -0.59 10.07 22.27 0.22 -0.36 16 24 C -0.17 -1.94 9.97 22.03 0.22 -1.72 16 25 C -0.07 -0.86 9.96 22.06 0.22 -0.64 16 26 C -0.16 -2.71 9.97 22.14 0.22 -2.49 16 27 C 0.11 2.39 6.87 39.21 0.27 2.66 16 28 H 0.14 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.09 1.93 6.44 -2.39 -0.02 1.91 16 32 H 0.06 2.27 7.13 -2.38 -0.02 2.25 16 33 H 0.03 1.34 6.85 -2.39 -0.02 1.33 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.10 2.45 7.40 -2.38 -0.02 2.43 16 36 H 0.13 2.14 7.18 -2.39 -0.02 2.12 16 37 H 0.11 2.53 8.09 -2.39 -0.02 2.51 16 38 H 0.08 2.41 8.10 -2.39 -0.02 2.39 16 39 H 0.23 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -82.23 375.72 6.03 -76.21 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.98 Total: 13.06 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.47 Total: 5.57 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.26 Total: -113.29 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.51 kcal Total: -82.23 6.03 -76.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180062023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.965 kcal (2) G-P(sol) polarization free energy of solvation -82.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds