Wall clock time and date at job start Tue Mar 31 2020 14:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46803 * 227.11087 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46720 * 90.00459 * 11 9 7 13 13 H 1.48501 * 109.47014 * 210.00174 * 11 9 7 14 14 H 1.48500 * 109.47090 * 330.00561 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21288 * 119.99593 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.34224 * 126.56834 * 264.68761 * 19 18 17 21 21 N 1.36920 * 109.91310 * 179.89306 * 20 19 18 22 22 H 0.96997 * 124.98579 * 180.13418 * 21 20 19 23 23 C 1.37423 * 110.02192 * 0.38493 * 21 20 19 24 24 N 1.32660 * 133.19094 * 179.75197 * 23 21 20 25 25 C 1.31593 * 121.66829 * 180.02562 * 24 23 21 26 26 C 1.38663 * 121.58455 * 0.02562 * 25 24 23 27 27 C 1.38197 * 119.40874 * 359.97041 * 26 25 24 28 28 C 1.39689 * 118.04424 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47078 * 107.11617 * 3 2 1 30 30 H 1.09001 * 109.47752 * 347.11150 * 3 2 1 31 31 H 1.09003 * 109.46871 * 60.00403 * 4 3 2 32 32 H 1.08994 * 109.47270 * 299.99881 * 4 3 2 33 33 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 34 34 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 35 35 H 0.97004 * 119.99914 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 37 37 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 39 39 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 40 40 H 1.08003 * 125.04259 * 0.03154 * 20 19 18 41 41 H 1.07997 * 119.20463 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.29403 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.97887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9827 1.0569 5 7 4.5826 0.9838 1.0565 6 6 5.3161 0.0546 1.9196 7 6 5.5670 0.7029 3.2568 8 1 5.2150 1.7064 3.4450 9 6 6.2452 0.0144 4.2401 10 7 6.6734 -1.2078 4.0111 11 14 6.5570 0.8181 5.8974 12 1 5.4273 0.5180 6.8133 13 1 7.8176 0.2872 6.4756 14 1 6.6738 2.2879 5.7205 15 6 5.2555 1.8397 0.2621 16 8 6.4684 1.8409 0.2621 17 6 4.5011 2.7951 -0.6261 18 6 5.4944 3.6477 -1.4181 19 6 4.7399 4.6027 -2.3067 20 6 4.4266 4.4152 -3.5984 21 7 3.7360 5.4982 -4.0727 22 1 3.4019 5.5915 -4.9785 23 6 3.5909 6.4359 -3.0787 24 7 3.0166 7.6309 -3.0346 25 6 3.0108 8.3546 -1.9356 26 6 3.6057 7.9046 -0.7666 27 6 4.2200 6.6667 -0.7508 28 6 4.2142 5.9155 -1.9285 29 1 2.9712 0.3033 -0.9822 30 1 2.9719 -1.0009 0.2292 31 1 2.7543 0.6801 2.0391 32 1 2.7538 1.9842 0.8277 33 1 4.7277 -0.8521 2.0601 34 1 6.2685 -0.1987 1.4542 35 1 7.1502 -1.6924 4.7031 36 1 3.8737 3.4425 -0.0133 37 1 3.8749 2.2310 -1.3174 38 1 6.1214 3.0000 -2.0309 39 1 6.1208 4.2118 -0.7270 40 1 4.6795 3.5390 -4.1769 41 1 2.5320 9.3225 -1.9445 42 1 3.5890 8.5160 0.1235 43 1 4.6907 6.2912 0.1458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181036183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:43 Heat of formation + Delta-G solvation = 53.392533 kcal Electronic energy + Delta-G solvation = -26387.678389 eV Core-core repulsion = 22626.337600 eV Total energy + Delta-G solvation = -3761.340789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67957 -39.29493 -37.97476 -36.86150 -35.28482 -34.24723 -32.90683 -32.16186 -30.82207 -29.93292 -29.12129 -27.24661 -24.60043 -23.95504 -23.80659 -22.69262 -22.21092 -19.42592 -18.42945 -18.33720 -17.58373 -16.92542 -16.46731 -16.41280 -16.09298 -15.57777 -15.12981 -14.98882 -14.75938 -14.68249 -14.19497 -13.82183 -13.50952 -13.32935 -13.07620 -12.77915 -12.60304 -12.58705 -12.41228 -12.27522 -12.20823 -11.92171 -11.75034 -11.61316 -11.26042 -11.02620 -10.94074 -10.70493 -10.59567 -10.39050 -10.18857 -9.70301 -9.52770 -8.99730 -8.60235 -8.47302 -8.06301 -7.82836 -6.08802 -4.13264 0.86037 1.24011 2.48028 2.62274 2.73816 2.81919 3.28284 3.32858 3.36031 3.40812 3.68169 3.77340 4.21839 4.34885 4.41841 4.55513 4.62124 4.84175 5.00451 5.01793 5.10142 5.13371 5.21176 5.26083 5.27435 5.32633 5.44570 5.56234 5.60013 5.70282 5.77014 5.87604 6.08490 6.12038 6.15738 6.26649 6.35053 6.48789 6.82560 6.95378 7.12553 7.37154 7.44454 7.58218 7.86035 7.87502 8.18000 8.28899 8.84997 9.00965 9.52381 10.99299 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.003203 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.102442 B = 8739.527730 C = 9889.960571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.506 3.494 16 O -0.534 6.534 17 C -0.136 4.136 18 C -0.031 4.031 19 C -0.151 4.151 20 C 0.058 3.942 21 N -0.583 5.583 22 H 0.418 0.582 23 C 0.283 3.717 24 N -0.505 5.505 25 C 0.135 3.865 26 C -0.205 4.205 27 C -0.024 4.024 28 C -0.145 4.145 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 12.194 -14.599 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.411 6.411 17 C -0.177 4.177 18 C -0.069 4.069 19 C -0.158 4.158 20 C -0.067 4.067 21 N -0.190 5.190 22 H 0.255 0.745 23 C 0.050 3.950 24 N -0.218 5.218 25 C -0.031 4.031 26 C -0.227 4.227 27 C -0.050 4.050 28 C -0.153 4.153 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.196 0.804 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.828 12.262 -15.422 21.200 hybrid contribution 0.695 0.083 1.320 1.494 sum -7.133 12.345 -14.102 20.053 Atomic orbital electron populations 1.81208 1.13088 1.09110 1.08998 1.29134 0.95138 0.92900 0.92919 1.19909 0.81271 1.04856 1.03138 1.21288 0.82336 0.98197 0.99009 1.48231 1.04765 1.38192 1.41819 1.19332 0.92578 0.87233 0.88314 1.21423 1.36582 1.01135 0.97521 0.92388 1.24916 0.95327 0.94876 0.98880 1.69919 1.38325 1.10861 1.34193 0.86528 0.77697 0.79713 0.83680 1.20678 1.21117 1.19865 1.20436 0.88154 0.81433 0.80690 1.90690 1.13891 1.69257 1.67258 1.21747 0.99279 0.97956 0.98701 1.19679 0.95622 0.94954 0.96648 1.20346 1.06148 0.95041 0.94266 1.21728 0.98243 0.91559 0.95205 1.41505 1.50424 1.14842 1.12181 0.74461 1.18405 0.98318 0.90088 0.88177 1.66465 1.20327 1.04677 1.30323 1.22411 0.95705 0.97965 0.86980 1.21864 1.03051 0.97684 1.00100 1.21068 0.94631 0.92663 0.96652 1.19812 1.04222 0.96685 0.94533 0.87559 0.86546 0.88921 0.90584 0.94868 0.93571 0.92693 0.89473 0.89637 0.90145 0.90205 0.80435 0.82483 0.84586 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.60 18.54 42.15 0.78 -5.82 16 2 C 0.22 2.62 15.43 -20.76 -0.32 2.30 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 5 N -0.60 -10.60 2.46 -175.05 -0.43 -11.03 16 6 C 0.24 5.68 5.16 -5.19 -0.03 5.66 16 7 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 11 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 15 C 0.51 8.83 7.67 -10.99 -0.08 8.74 16 16 O -0.53 -11.81 15.56 5.55 0.09 -11.72 16 17 C -0.14 -1.66 4.23 -27.89 -0.12 -1.77 16 18 C -0.03 -0.36 5.04 -27.88 -0.14 -0.51 16 19 C -0.15 -1.63 5.57 -102.76 -0.57 -2.21 16 20 C 0.06 0.50 11.74 -16.69 -0.20 0.30 16 21 N -0.58 -5.29 6.05 -12.14 -0.07 -5.36 16 22 H 0.42 2.66 8.96 -40.82 -0.37 2.30 16 23 C 0.28 3.38 8.43 -155.68 -1.31 2.07 16 24 N -0.50 -6.07 10.39 -12.27 -0.13 -6.20 16 25 C 0.13 1.32 11.14 -17.50 -0.20 1.13 16 26 C -0.21 -1.93 10.10 -39.44 -0.40 -2.33 16 27 C -0.02 -0.26 10.22 -39.05 -0.40 -0.66 16 28 C -0.15 -1.75 6.37 -105.11 -0.67 -2.42 16 29 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 30 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.09 1.01 7.40 -51.93 -0.38 0.62 16 37 H 0.09 0.82 7.18 -51.93 -0.37 0.44 16 38 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -35.12 377.75 -8.96 -44.08 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.56 Total: 0.45 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -5.05 Total: -1.53 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.89 Total: -53.01 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.12 -8.96 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181036183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.472 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds