Wall clock time and date at job start Tue Mar 31 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46803 * 227.11087 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46720 * 90.00459 * 11 9 7 13 13 H 1.48501 * 109.47014 * 210.00174 * 11 9 7 14 14 H 1.48500 * 109.47090 * 330.00561 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21288 * 119.99593 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.34224 * 126.56834 * 264.68761 * 19 18 17 21 21 N 1.36920 * 109.91310 * 179.89306 * 20 19 18 22 22 H 0.96997 * 124.98579 * 180.13418 * 21 20 19 23 23 C 1.37423 * 110.02192 * 0.38493 * 21 20 19 24 24 N 1.32660 * 133.19094 * 179.75197 * 23 21 20 25 25 C 1.31593 * 121.66829 * 180.02562 * 24 23 21 26 26 C 1.38663 * 121.58455 * 0.02562 * 25 24 23 27 27 C 1.38197 * 119.40874 * 359.97041 * 26 25 24 28 28 C 1.39689 * 118.04424 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47078 * 107.11617 * 3 2 1 30 30 H 1.09001 * 109.47752 * 347.11150 * 3 2 1 31 31 H 1.09003 * 109.46871 * 60.00403 * 4 3 2 32 32 H 1.08994 * 109.47270 * 299.99881 * 4 3 2 33 33 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 34 34 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 35 35 H 0.97004 * 119.99914 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 37 37 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 39 39 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 40 40 H 1.08003 * 125.04259 * 0.03154 * 20 19 18 41 41 H 1.07997 * 119.20463 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.29403 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.97887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9827 1.0569 5 7 4.5826 0.9838 1.0565 6 6 5.3161 0.0546 1.9196 7 6 5.5670 0.7029 3.2568 8 1 5.2150 1.7064 3.4450 9 6 6.2452 0.0144 4.2401 10 7 6.6734 -1.2078 4.0111 11 14 6.5570 0.8181 5.8974 12 1 5.4273 0.5180 6.8133 13 1 7.8176 0.2872 6.4756 14 1 6.6738 2.2879 5.7205 15 6 5.2555 1.8397 0.2621 16 8 6.4684 1.8409 0.2621 17 6 4.5011 2.7951 -0.6261 18 6 5.4944 3.6477 -1.4181 19 6 4.7399 4.6027 -2.3067 20 6 4.4266 4.4152 -3.5984 21 7 3.7360 5.4982 -4.0727 22 1 3.4019 5.5915 -4.9785 23 6 3.5909 6.4359 -3.0787 24 7 3.0166 7.6309 -3.0346 25 6 3.0108 8.3546 -1.9356 26 6 3.6057 7.9046 -0.7666 27 6 4.2200 6.6667 -0.7508 28 6 4.2142 5.9155 -1.9285 29 1 2.9712 0.3033 -0.9822 30 1 2.9719 -1.0009 0.2292 31 1 2.7543 0.6801 2.0391 32 1 2.7538 1.9842 0.8277 33 1 4.7277 -0.8521 2.0601 34 1 6.2685 -0.1987 1.4542 35 1 7.1502 -1.6924 4.7031 36 1 3.8737 3.4425 -0.0133 37 1 3.8749 2.2310 -1.3174 38 1 6.1214 3.0000 -2.0309 39 1 6.1208 4.2118 -0.7270 40 1 4.6795 3.5390 -4.1769 41 1 2.5320 9.3225 -1.9445 42 1 3.5890 8.5160 0.1235 43 1 4.6907 6.2912 0.1458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181036183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:42 Heat of formation + Delta-G solvation = 32.480080 kcal Electronic energy + Delta-G solvation = -26388.585221 eV Core-core repulsion = 22626.337600 eV Total energy + Delta-G solvation = -3762.247621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41996 -40.68136 -38.71554 -37.96552 -36.66362 -35.23676 -34.73480 -33.07065 -32.09767 -30.73444 -30.09823 -28.82634 -25.86401 -25.25626 -24.56488 -23.73078 -23.39380 -20.24206 -19.76070 -19.09668 -18.75900 -18.29543 -17.72241 -17.56422 -17.02545 -16.88963 -16.27823 -16.10408 -15.87283 -15.59871 -15.48884 -14.89682 -14.64409 -14.34192 -14.14589 -13.96521 -13.66088 -13.59517 -13.53934 -13.48945 -13.19411 -13.09237 -12.87740 -12.80608 -12.77124 -12.59998 -12.43044 -12.14967 -11.95218 -11.64977 -11.60785 -11.20835 -10.55616 -10.47303 -10.30153 -9.40497 -9.34729 -8.81569 -8.15182 -6.27180 0.11052 0.47658 1.41228 1.43553 1.52847 1.70449 1.74423 1.86202 1.95196 2.00153 2.37507 2.50192 2.99032 3.14906 3.19828 3.66754 3.74808 3.87752 3.99294 4.10926 4.16241 4.17400 4.26178 4.35815 4.42264 4.59651 4.61395 4.75991 4.80630 4.81292 4.88943 4.99461 5.10565 5.20354 5.27528 5.31257 5.39564 5.45078 5.57185 5.65891 5.70814 5.93417 6.07935 6.17321 6.49350 6.62803 6.80179 6.88554 7.12183 7.38519 7.61086 8.91261 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.003203 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.102442 B = 8739.527730 C = 9889.960571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.259 3.741 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.501 3.499 16 O -0.589 6.589 17 C -0.120 4.120 18 C -0.020 4.020 19 C -0.177 4.177 20 C 0.083 3.917 21 N -0.575 5.575 22 H 0.431 0.569 23 C 0.258 3.742 24 N -0.525 5.525 25 C 0.126 3.874 26 C -0.201 4.201 27 C -0.046 4.046 28 C -0.165 4.165 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.217 0.783 41 H 0.187 0.813 42 H 0.161 0.839 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 13.255 -15.693 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.010 4.010 5 N -0.330 5.330 6 C 0.138 3.862 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.291 3.709 16 O -0.470 6.470 17 C -0.160 4.160 18 C -0.059 4.059 19 C -0.185 4.185 20 C -0.043 4.043 21 N -0.182 5.182 22 H 0.270 0.730 23 C 0.024 3.976 24 N -0.238 5.238 25 C -0.039 4.039 26 C -0.222 4.222 27 C -0.072 4.072 28 C -0.172 4.172 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.233 0.767 41 H 0.204 0.796 42 H 0.179 0.821 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.281 13.342 -16.539 23.189 hybrid contribution 1.147 -0.202 1.632 2.005 sum -8.134 13.140 -14.907 21.472 Atomic orbital electron populations 1.81252 1.14510 1.10641 1.10628 1.29217 0.95023 0.91460 0.91428 1.19860 0.79903 1.04320 1.03792 1.21473 0.79283 1.00629 0.99615 1.48118 1.06602 1.37339 1.40982 1.18780 0.91503 0.88218 0.87709 1.21776 1.36160 1.00914 0.98951 0.92917 1.25714 0.95301 0.95426 1.02383 1.70023 1.39220 1.12092 1.35287 0.85584 0.77806 0.78612 0.79835 1.19357 1.21033 1.19812 1.21392 0.87778 0.81249 0.80461 1.90666 1.16600 1.70725 1.68973 1.21729 0.99012 0.96940 0.98330 1.19476 0.95330 0.94776 0.96275 1.20182 1.08106 0.94919 0.95258 1.22282 0.95680 0.91813 0.94532 1.41592 1.49879 1.14301 1.12425 0.72967 1.18690 0.99153 0.90676 0.89032 1.66519 1.20920 1.05063 1.31346 1.22973 0.95506 0.98854 0.86600 1.22172 1.01808 0.97255 1.00963 1.21281 0.95557 0.93603 0.96765 1.20097 1.04624 0.97434 0.95020 0.84206 0.86180 0.90205 0.87845 0.94998 0.97678 0.92630 0.88408 0.85830 0.90119 0.92908 0.76662 0.79625 0.82131 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.69 18.54 20.01 0.37 -13.32 16 2 C 0.25 5.31 15.43 89.44 1.38 6.69 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.48 16 4 C 0.11 2.76 5.17 86.38 0.45 3.21 16 5 N -0.60 -20.92 2.46 -826.13 -2.03 -22.95 16 6 C 0.26 12.34 5.16 85.63 0.44 12.78 16 7 C -0.54 -28.94 9.39 25.60 0.24 -28.70 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.59 5.46 84.65 0.46 1.06 16 10 N -0.93 -53.49 13.29 21.45 0.28 -53.20 16 11 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 C 0.50 17.25 7.67 87.66 0.67 17.92 16 16 O -0.59 -26.77 15.56 -3.05 -0.05 -26.81 16 17 C -0.12 -2.65 4.23 29.85 0.13 -2.53 16 18 C -0.02 -0.46 5.04 29.85 0.15 -0.31 16 19 C -0.18 -3.52 5.57 -18.66 -0.10 -3.63 16 20 C 0.08 1.17 11.74 82.98 0.97 2.14 16 21 N -0.57 -9.03 6.05 -192.33 -1.16 -10.19 16 22 H 0.43 4.38 8.96 -92.71 -0.83 3.55 16 23 C 0.26 5.77 8.43 133.93 1.13 6.90 16 24 N -0.52 -11.93 10.39 -192.73 -2.00 -13.93 16 25 C 0.13 2.27 11.14 84.83 0.95 3.21 16 26 C -0.20 -3.50 10.10 22.36 0.23 -3.27 16 27 C -0.05 -0.97 10.22 22.61 0.23 -0.74 16 28 C -0.16 -3.78 6.37 -20.18 -0.13 -3.91 16 29 H 0.14 1.60 7.22 -2.39 -0.02 1.58 16 30 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 33 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 34 H 0.01 0.28 7.42 -2.39 -0.02 0.27 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.10 2.02 7.40 -2.39 -0.02 2.00 16 37 H 0.12 1.80 7.18 -2.39 -0.02 1.79 16 38 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.22 1.24 8.06 -2.91 -0.02 1.21 16 41 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -79.82 377.75 5.03 -74.79 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.22 Total: 9.81 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.37 Total: 10.34 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.54 Total: -113.59 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -79.82 5.03 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181036183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.268 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds