Wall clock time and date at job start Tue Mar 31 2020 14:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00374 * 2 1 4 4 C 1.38733 * 120.05766 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05320 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94384 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47382 * 90.00260 * 7 6 5 9 9 C 1.34772 * 120.00207 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00295 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.39129 * 120.00331 * 184.90747 * 11 9 8 13 13 C 1.38653 * 120.28389 * 330.95917 * 12 11 9 14 14 C 1.38215 * 120.03596 * 180.27644 * 13 12 11 15 15 C 1.38877 * 120.61227 * 359.71710 * 14 13 12 16 16 C 1.36459 * 120.57547 * 359.97438 * 15 14 13 17 17 C 1.40728 * 119.94848 * 0.02562 * 16 15 14 18 18 C 1.41068 * 120.30511 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00650 * 205.08570 * 18 17 16 20 20 C 1.39950 * 119.99707 * 25.08558 * 18 17 16 21 21 N 1.30865 * 120.00134 * 17.58191 * 20 18 17 22 22 Si 1.86800 * 119.99994 * 197.58086 * 20 18 17 23 23 H 1.48495 * 109.47384 * 265.01600 * 22 20 18 24 24 H 1.48508 * 109.47161 * 25.02034 * 22 20 18 25 25 H 1.48503 * 109.47024 * 145.01453 * 22 20 18 26 26 C 1.38264 * 120.11368 * 0.25936 * 6 5 4 27 27 C 1.38149 * 120.05432 * 359.44709 * 26 6 5 28 28 H 1.09001 * 109.46639 * 60.00012 * 1 2 3 29 29 H 1.08993 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47165 * 300.00470 * 1 2 3 31 31 H 1.08006 * 120.02855 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.97691 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47123 * 330.00276 * 7 6 5 34 34 H 1.08999 * 109.47505 * 210.00146 * 7 6 5 35 35 H 0.97006 * 119.99724 * 0.02562 * 8 7 6 36 36 H 0.97006 * 120.00206 * 4.91120 * 11 9 8 37 37 H 1.08004 * 119.97936 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.69659 * 179.73149 * 14 13 12 39 39 H 1.08001 * 119.70880 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.02326 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99942 * 180.02562 * 21 20 18 42 42 H 1.08000 * 119.97576 * 179.70512 * 26 6 5 43 43 H 1.07997 * 120.02550 * 180.25150 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4545 -1.3780 9 6 4.8106 6.6350 -1.6233 10 8 5.1690 7.3383 -0.6986 11 7 5.0154 7.0360 -2.8936 12 6 5.7270 8.2041 -3.1483 13 6 5.7154 9.2439 -2.2311 14 6 6.4194 10.4044 -2.4920 15 6 7.1480 10.5407 -3.6664 16 6 7.1818 9.5307 -4.5834 17 6 6.4737 8.3388 -4.3422 18 6 6.5039 7.2897 -5.2848 19 1 5.6928 6.5779 -5.3269 20 6 7.5852 7.1712 -6.1654 21 7 8.7085 7.7920 -5.9097 22 14 7.4250 6.1269 -7.7059 23 1 7.9512 4.7645 -7.4374 24 1 5.9951 6.0372 -8.0967 25 1 8.2013 6.7489 -8.8086 26 6 1.9213 3.6047 0.0070 27 6 1.2916 2.3751 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0209 0.3798 0.0014 32 1 5.1346 2.5749 0.0011 33 1 4.9441 4.9377 0.5169 34 1 3.3582 5.7459 0.5169 35 1 3.9221 4.8935 -2.1159 36 1 4.6667 6.5102 -3.6304 37 1 5.1519 9.1489 -1.3146 38 1 6.4031 11.2125 -1.7757 39 1 7.6931 11.4537 -3.8552 40 1 7.7516 9.6461 -5.4936 41 1 9.4577 7.7102 -6.5203 42 1 1.3344 4.5114 0.0122 43 1 0.2130 2.3203 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185546717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:25 Heat of formation + Delta-G solvation = -15.252712 kcal Electronic energy + Delta-G solvation = -25983.010820 eV Core-core repulsion = 22186.400599 eV Total energy + Delta-G solvation = -3796.610222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47759 -39.70719 -38.08255 -37.21454 -34.45257 -33.67074 -33.59437 -31.40125 -30.80846 -29.56231 -28.36282 -27.71328 -25.57114 -24.93376 -22.91497 -21.85152 -21.25786 -20.76363 -19.79404 -18.47386 -17.81614 -17.23035 -16.64660 -16.52280 -16.07325 -15.37835 -15.24109 -14.99688 -14.72011 -14.47556 -14.15006 -13.98858 -13.75643 -13.57704 -12.99657 -12.90288 -12.71316 -12.50986 -12.27956 -12.16785 -11.69542 -11.62492 -11.36188 -11.33416 -11.10666 -11.07624 -10.96103 -10.50858 -10.05259 -9.66176 -9.34948 -9.26392 -9.17926 -8.86245 -8.74050 -8.41296 -7.34318 -6.87581 -6.69037 -4.30406 1.05442 1.09826 2.74910 2.93469 2.99023 3.05065 3.08112 3.20496 3.25629 3.66874 3.90067 3.93931 4.48185 4.59097 4.63248 4.66537 4.74160 4.77048 4.95207 5.07292 5.11264 5.12917 5.36163 5.56683 5.69375 5.76886 5.82610 5.98916 6.06085 6.40300 6.42241 6.47435 6.58137 6.65313 6.79542 6.94817 7.06544 7.13967 7.17134 7.36321 7.49597 7.69521 7.90063 8.09858 8.19369 8.22727 8.62105 8.66007 8.89784 8.94423 9.30885 10.18432 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.002728 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.751120 B =10262.205625 C =11890.582890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.154 4.154 5 C -0.059 4.059 6 C -0.139 4.139 7 C 0.187 3.813 8 N -0.749 5.749 9 C 0.695 3.305 10 O -0.586 6.586 11 N -0.653 5.653 12 C 0.034 3.966 13 C -0.096 4.096 14 C -0.227 4.227 15 C -0.115 4.115 16 C -0.155 4.155 17 C 0.101 3.899 18 C -0.466 4.466 19 H 0.072 0.928 20 C 0.078 3.922 21 N -0.792 5.792 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.261 1.261 25 H -0.275 1.275 26 C -0.059 4.059 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.398 0.602 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.280 0.720 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 -13.634 7.548 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.140 4.140 7 C 0.063 3.937 8 N -0.407 5.407 9 C 0.396 3.604 10 O -0.465 6.465 11 N -0.297 5.297 12 C -0.060 4.060 13 C -0.116 4.116 14 C -0.247 4.247 15 C -0.134 4.134 16 C -0.175 4.175 17 C 0.097 3.903 18 C -0.496 4.496 19 H 0.090 0.910 20 C -0.139 4.139 21 N -0.417 5.417 22 Si 0.729 3.271 23 H -0.197 1.197 24 H -0.185 1.185 25 H -0.200 1.200 26 C -0.078 4.078 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.949 -13.179 8.327 20.266 hybrid contribution -0.438 -0.982 -1.437 1.795 sum -13.387 -14.161 6.890 20.669 Atomic orbital electron populations 1.23063 0.78330 1.03954 1.01457 1.86072 1.21457 1.27055 1.88628 1.19100 0.92435 0.84129 0.95920 1.20449 0.91324 0.98760 1.06713 1.20988 1.00266 0.90794 0.95663 1.19881 0.93659 0.95029 1.05444 1.19859 0.99829 0.90907 0.83116 1.45176 1.66307 1.21131 1.08043 1.15987 0.79161 0.81295 0.83915 1.90830 1.57168 1.54859 1.43616 1.41959 1.56373 1.26010 1.05383 1.17517 1.04829 0.86125 0.97565 1.20897 1.00035 0.91843 0.98816 1.20323 1.06763 0.98344 0.99314 1.20456 0.99643 0.97996 0.95269 1.20836 1.04245 0.92352 1.00050 1.17360 0.89704 0.93026 0.90241 1.19191 1.04864 1.10905 1.14636 0.90984 1.25821 0.94271 0.95365 0.98493 1.69848 1.01686 1.35735 1.34425 0.86362 0.79599 0.79979 0.81129 1.19721 1.18511 1.20046 1.20921 0.93903 0.97206 0.95778 1.21227 1.00056 0.92269 1.09460 0.92537 0.88249 0.92604 0.85054 0.84852 0.90963 0.91119 0.77299 0.76786 0.86182 0.89344 0.89545 0.86293 0.90901 0.85426 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.01 10.50 -19.42 -0.20 -3.22 16 3 C 0.13 1.30 6.69 -39.22 -0.26 1.03 16 4 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16 5 C -0.06 -0.59 9.69 -39.61 -0.38 -0.98 16 6 C -0.14 -1.47 5.25 -104.60 -0.55 -2.02 16 7 C 0.19 2.37 5.80 -5.19 -0.03 2.34 16 8 N -0.75 -10.95 5.55 -66.42 -0.37 -11.32 16 9 C 0.70 13.76 8.44 -86.92 -0.73 13.03 16 10 O -0.59 -13.64 13.41 5.30 0.07 -13.57 16 11 N -0.65 -13.61 5.10 -13.83 -0.07 -13.68 16 12 C 0.03 0.83 6.44 -83.17 -0.54 0.30 16 13 C -0.10 -2.37 8.75 -39.44 -0.34 -2.72 16 14 C -0.23 -5.46 10.04 -39.35 -0.39 -5.86 16 15 C -0.11 -2.78 9.97 -39.99 -0.40 -3.18 16 16 C -0.15 -4.04 8.63 -39.28 -0.34 -4.38 16 17 C 0.10 2.64 5.58 -106.65 -0.60 2.04 16 18 C -0.47 -11.73 8.65 -37.87 -0.33 -12.06 16 19 H 0.07 1.67 6.69 -52.49 -0.35 1.32 16 20 C 0.08 1.91 5.14 -17.32 -0.09 1.82 16 21 N -0.79 -20.25 10.98 55.55 0.61 -19.64 16 22 Si 0.90 18.07 29.59 -169.99 -5.03 13.04 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 26 C -0.06 -0.57 9.69 -39.60 -0.38 -0.95 16 27 C -0.21 -1.91 9.04 -39.43 -0.36 -2.27 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.39 4.89 8.48 -40.82 -0.35 4.55 16 36 H 0.40 7.31 7.36 -40.82 -0.30 7.01 16 37 H 0.12 2.98 5.75 -52.48 -0.30 2.68 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.17 6.19 -52.49 -0.32 2.84 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -31.42 363.03 -9.91 -41.33 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -5.26 Total: 16.22 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -5.13 Total: -14.63 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.17 Total: -44.65 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.13 Total: -16.78 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.42 -9.91 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185546717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds