Wall clock time and date at job start Tue Mar 31 2020 14:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00374 * 2 1 4 4 C 1.38733 * 120.05766 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05320 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94384 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47382 * 90.00260 * 7 6 5 9 9 C 1.34772 * 120.00207 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00295 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.39129 * 120.00331 * 184.90747 * 11 9 8 13 13 C 1.38653 * 120.28389 * 330.95917 * 12 11 9 14 14 C 1.38215 * 120.03596 * 180.27644 * 13 12 11 15 15 C 1.38877 * 120.61227 * 359.71710 * 14 13 12 16 16 C 1.36459 * 120.57547 * 359.97438 * 15 14 13 17 17 C 1.40728 * 119.94848 * 0.02562 * 16 15 14 18 18 C 1.41068 * 120.30511 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00650 * 205.08570 * 18 17 16 20 20 C 1.39950 * 119.99707 * 25.08558 * 18 17 16 21 21 N 1.30865 * 120.00134 * 17.58191 * 20 18 17 22 22 Si 1.86800 * 119.99994 * 197.58086 * 20 18 17 23 23 H 1.48495 * 109.47384 * 265.01600 * 22 20 18 24 24 H 1.48508 * 109.47161 * 25.02034 * 22 20 18 25 25 H 1.48503 * 109.47024 * 145.01453 * 22 20 18 26 26 C 1.38264 * 120.11368 * 0.25936 * 6 5 4 27 27 C 1.38149 * 120.05432 * 359.44709 * 26 6 5 28 28 H 1.09001 * 109.46639 * 60.00012 * 1 2 3 29 29 H 1.08993 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47165 * 300.00470 * 1 2 3 31 31 H 1.08006 * 120.02855 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.97691 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47123 * 330.00276 * 7 6 5 34 34 H 1.08999 * 109.47505 * 210.00146 * 7 6 5 35 35 H 0.97006 * 119.99724 * 0.02562 * 8 7 6 36 36 H 0.97006 * 120.00206 * 4.91120 * 11 9 8 37 37 H 1.08004 * 119.97936 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.69659 * 179.73149 * 14 13 12 39 39 H 1.08001 * 119.70880 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.02326 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99942 * 180.02562 * 21 20 18 42 42 H 1.08000 * 119.97576 * 179.70512 * 26 6 5 43 43 H 1.07997 * 120.02550 * 180.25150 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4545 -1.3780 9 6 4.8106 6.6350 -1.6233 10 8 5.1690 7.3383 -0.6986 11 7 5.0154 7.0360 -2.8936 12 6 5.7270 8.2041 -3.1483 13 6 5.7154 9.2439 -2.2311 14 6 6.4194 10.4044 -2.4920 15 6 7.1480 10.5407 -3.6664 16 6 7.1818 9.5307 -4.5834 17 6 6.4737 8.3388 -4.3422 18 6 6.5039 7.2897 -5.2848 19 1 5.6928 6.5779 -5.3269 20 6 7.5852 7.1712 -6.1654 21 7 8.7085 7.7920 -5.9097 22 14 7.4250 6.1269 -7.7059 23 1 7.9512 4.7645 -7.4374 24 1 5.9951 6.0372 -8.0967 25 1 8.2013 6.7489 -8.8086 26 6 1.9213 3.6047 0.0070 27 6 1.2916 2.3751 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0209 0.3798 0.0014 32 1 5.1346 2.5749 0.0011 33 1 4.9441 4.9377 0.5169 34 1 3.3582 5.7459 0.5169 35 1 3.9221 4.8935 -2.1159 36 1 4.6667 6.5102 -3.6304 37 1 5.1519 9.1489 -1.3146 38 1 6.4031 11.2125 -1.7757 39 1 7.6931 11.4537 -3.8552 40 1 7.7516 9.6461 -5.4936 41 1 9.4577 7.7102 -6.5203 42 1 1.3344 4.5114 0.0122 43 1 0.2130 2.3203 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185546717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:24 Heat of formation + Delta-G solvation = -33.662504 kcal Electronic energy + Delta-G solvation = -25983.809129 eV Core-core repulsion = 22186.400599 eV Total energy + Delta-G solvation = -3797.408530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47043 -41.02543 -39.28383 -38.57977 -35.76939 -35.41591 -35.40008 -32.15858 -31.81176 -31.44679 -29.94444 -28.42937 -27.13743 -26.24557 -23.65917 -23.45788 -22.64217 -22.10512 -21.47233 -19.42299 -19.15080 -19.03558 -18.20667 -17.30883 -16.97442 -16.65369 -16.47220 -16.32646 -16.17441 -15.75628 -15.45887 -15.11130 -14.71159 -14.65363 -14.47016 -14.44031 -14.15794 -13.67305 -13.52707 -13.44049 -13.12975 -12.82441 -12.76454 -12.73647 -12.47290 -12.17338 -12.00378 -11.86765 -11.75570 -11.50369 -11.10929 -11.00818 -10.63729 -10.09476 -9.98483 -9.29496 -9.18758 -8.72213 -8.53112 -6.22381 0.26337 0.36380 0.94529 1.13392 1.42508 1.53101 1.58430 1.89776 2.22806 2.31168 2.35931 2.77243 2.81691 3.52341 3.71970 3.77051 3.81118 3.93830 4.20600 4.38112 4.40276 4.41539 4.55834 4.59326 4.66856 4.71864 4.76292 4.77337 4.83037 5.06774 5.09329 5.22608 5.28146 5.32699 5.35124 5.48275 5.52567 5.62433 5.75434 5.80323 5.82827 6.13338 6.22058 6.26926 6.39082 6.41678 6.71900 6.90119 7.05205 7.23239 7.70936 8.37723 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.002728 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.751120 B =10262.205625 C =11890.582890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.165 4.165 5 C -0.062 4.062 6 C -0.147 4.147 7 C 0.190 3.810 8 N -0.728 5.728 9 C 0.694 3.306 10 O -0.622 6.622 11 N -0.652 5.652 12 C 0.029 3.971 13 C -0.110 4.110 14 C -0.232 4.232 15 C -0.119 4.119 16 C -0.178 4.178 17 C 0.073 3.927 18 C -0.487 4.487 19 H 0.086 0.914 20 C 0.035 3.965 21 N -0.827 5.827 22 Si 0.982 3.018 23 H -0.266 1.266 24 H -0.253 1.253 25 H -0.272 1.272 26 C -0.059 4.059 27 C -0.210 4.210 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.408 0.592 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.287 0.713 42 H 0.140 0.860 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 -15.337 7.099 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.078 3.922 4 C -0.184 4.184 5 C -0.081 4.081 6 C -0.147 4.147 7 C 0.066 3.934 8 N -0.384 5.384 9 C 0.395 3.605 10 O -0.504 6.504 11 N -0.297 5.297 12 C -0.066 4.066 13 C -0.131 4.131 14 C -0.252 4.252 15 C -0.138 4.138 16 C -0.199 4.199 17 C 0.069 3.931 18 C -0.517 4.517 19 H 0.104 0.896 20 C -0.180 4.180 21 N -0.453 5.453 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.176 1.176 25 H -0.197 1.197 26 C -0.078 4.078 27 C -0.229 4.229 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.245 0.755 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.158 0.842 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.549 -14.931 7.885 22.288 hybrid contribution -0.015 -0.517 -1.202 1.309 sum -14.564 -15.448 6.682 22.257 Atomic orbital electron populations 1.23354 0.76388 1.05593 1.02352 1.86056 1.23537 1.26870 1.88438 1.19289 0.92641 0.84779 0.95463 1.20606 0.91848 0.98951 1.06972 1.21055 1.00568 0.90837 0.95607 1.19669 0.94122 0.93768 1.07186 1.19907 0.99674 0.92174 0.81608 1.45056 1.64477 1.19327 1.09579 1.16136 0.79170 0.82237 0.82997 1.90796 1.58762 1.56354 1.44479 1.41849 1.56194 1.25331 1.06323 1.17650 1.04581 0.87302 0.97078 1.21055 1.00666 0.92457 0.98922 1.20624 1.06148 0.98798 0.99639 1.20693 0.99652 0.98505 0.94965 1.20884 1.05270 0.93354 1.00357 1.17710 0.90466 0.93673 0.91249 1.19523 1.05707 1.11195 1.15236 0.89619 1.26737 0.93474 0.96502 1.01249 1.69919 1.02565 1.37068 1.35706 0.85199 0.79886 0.78025 0.76635 1.19134 1.17591 1.19700 1.21082 0.93506 0.98069 0.95147 1.21455 1.01244 0.91581 1.08607 0.91706 0.86423 0.91553 0.84311 0.84500 0.91882 0.91135 0.75721 0.75548 0.86394 0.86998 0.87220 0.87539 0.90276 0.84209 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.71 10.50 -92.39 -0.97 -6.68 16 3 C 0.12 2.26 6.69 22.51 0.15 2.41 16 4 C -0.17 -3.10 9.99 22.37 0.22 -2.88 16 5 C -0.06 -1.20 9.69 22.25 0.22 -0.98 16 6 C -0.15 -2.91 5.25 -19.85 -0.10 -3.02 16 7 C 0.19 4.68 5.80 85.63 0.50 5.17 16 8 N -0.73 -20.65 5.55 -482.31 -2.68 -23.33 16 9 C 0.69 27.36 8.44 179.06 1.51 28.87 16 10 O -0.62 -29.23 13.41 -3.96 -0.05 -29.28 16 11 N -0.65 -27.15 5.10 -315.94 -1.61 -28.76 16 12 C 0.03 1.45 6.44 38.88 0.25 1.70 16 13 C -0.11 -5.54 8.75 22.36 0.20 -5.35 16 14 C -0.23 -11.14 10.04 22.42 0.23 -10.91 16 15 C -0.12 -5.82 9.97 22.01 0.22 -5.60 16 16 C -0.18 -9.51 8.63 22.46 0.19 -9.32 16 17 C 0.07 3.89 5.58 -21.18 -0.12 3.77 16 18 C -0.49 -24.58 8.65 23.38 0.20 -24.37 16 19 H 0.09 3.92 6.69 -2.91 -0.02 3.90 16 20 C 0.04 1.71 5.14 85.25 0.44 2.15 16 21 N -0.83 -42.71 10.98 21.83 0.24 -42.47 16 22 Si 0.98 36.46 29.59 68.60 2.03 38.49 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 25 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 26 C -0.06 -1.02 9.69 22.25 0.22 -0.81 16 27 C -0.21 -3.31 9.04 22.37 0.20 -3.11 16 28 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16 34 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.41 9.53 8.48 -92.70 -0.79 8.74 16 36 H 0.41 14.81 7.36 -92.70 -0.68 14.12 16 37 H 0.12 5.94 5.75 -2.91 -0.02 5.92 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 5.84 6.19 -2.91 -0.02 5.83 16 41 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 Total: -1.00 -67.87 363.03 2.19 -65.69 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -0.40 Total: 47.36 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 5.63 Total: -21.01 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -4.05 Total: -94.57 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.02 Total: -35.96 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -67.87 2.19 -65.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185546717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.027 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds