Wall clock time and date at job start Tue Mar 31 2020 14:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 117.00089 * 2 1 4 4 C 1.38756 * 120.05427 * 0.25113 * 3 2 1 5 5 C 1.38125 * 119.94151 * 180.31761 * 4 3 2 6 6 C 1.38293 * 120.05847 * 359.68716 * 5 4 3 7 7 C 1.38251 * 120.10753 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05617 * 0.02697 * 7 6 5 9 9 C 1.50696 * 120.02682 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46972 * 259.99839 * 9 8 7 11 11 C 1.34773 * 119.99787 * 180.02562 * 10 9 8 12 12 O 1.21583 * 120.00074 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99712 * 179.97438 * 11 10 9 14 14 C 1.39130 * 119.99951 * 185.90773 * 13 11 10 15 15 C 1.38653 * 120.28616 * 19.23480 * 14 13 11 16 16 C 1.38217 * 120.03360 * 180.27481 * 15 14 13 17 17 C 1.38861 * 120.61725 * 359.71989 * 16 15 14 18 18 C 1.36464 * 120.57922 * 359.97438 * 17 16 15 19 19 C 1.40735 * 119.94011 * 0.02562 * 18 17 16 20 20 C 1.41074 * 120.29771 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99551 * 206.44039 * 20 19 18 22 22 C 1.39947 * 120.00308 * 26.44050 * 20 19 18 23 23 N 1.30861 * 119.99860 * 201.33352 * 22 20 19 24 24 Si 1.86794 * 120.00040 * 21.33151 * 22 20 19 25 25 H 1.48506 * 109.46859 * 270.00091 * 24 22 20 26 26 H 1.48504 * 109.47182 * 29.99875 * 24 22 20 27 27 H 1.48500 * 109.47432 * 150.00152 * 24 22 20 28 28 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47016 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.46953 * 59.99797 * 1 2 3 31 31 H 1.07999 * 120.03282 * 0.02885 * 4 3 2 32 32 H 1.08002 * 119.97787 * 179.70618 * 5 4 3 33 33 H 1.07990 * 119.94782 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.96839 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47037 * 140.00340 * 9 8 7 36 36 H 1.08997 * 109.47639 * 19.99427 * 9 8 7 37 37 H 0.96991 * 120.00030 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00182 * 5.90781 * 13 11 10 39 39 H 1.07999 * 119.98077 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.69109 * 179.73976 * 16 15 14 41 41 H 1.08002 * 119.71480 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.02939 * 180.02562 * 18 17 16 43 43 H 0.97000 * 120.00281 * 354.93515 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0014 6 6 3.3020 3.6758 -0.0067 7 6 4.0561 2.5170 -0.0060 8 6 3.4312 1.2848 -0.0004 9 6 4.2537 0.0221 -0.0002 10 7 4.3142 -0.5215 -1.3593 11 6 5.0003 -1.6560 -1.6014 12 8 5.5687 -2.2286 -0.6917 13 7 5.0555 -2.1564 -2.8516 14 6 5.6579 -3.3893 -3.0815 15 6 5.8434 -4.2825 -2.0373 16 6 6.4475 -5.5035 -2.2705 17 6 6.8688 -5.8518 -3.5470 18 6 6.6932 -4.9945 -4.5941 19 6 6.0808 -3.7450 -4.3837 20 6 5.8949 -2.8532 -5.4609 21 1 5.8387 -1.7901 -5.2782 22 6 5.7834 -3.3458 -6.7660 23 7 6.0279 -2.5613 -7.7845 24 14 5.2856 -5.1229 -7.0542 25 1 6.5004 -5.9758 -7.1015 26 1 4.4054 -5.5762 -5.9474 27 1 4.5554 -5.2298 -8.3429 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2129 2.3204 0.0098 32 1 1.3341 4.5114 -0.0021 33 1 3.7923 4.6380 -0.0115 34 1 5.1344 2.5751 -0.0106 35 1 3.7949 -0.7103 0.6639 36 1 5.2625 0.2456 0.3468 37 1 3.8599 -0.0654 -2.0848 38 1 4.6753 -1.6571 -3.5911 39 1 5.5192 -4.0223 -1.0405 40 1 6.5930 -6.1933 -1.4523 41 1 7.3389 -6.8100 -3.7128 42 1 7.0239 -5.2747 -5.5833 43 1 6.2145 -1.6207 -7.6385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186135351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:32 Heat of formation + Delta-G solvation = -14.762684 kcal Electronic energy + Delta-G solvation = -26648.834303 eV Core-core repulsion = 22852.245330 eV Total energy + Delta-G solvation = -3796.588973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60370 -39.75971 -37.78665 -37.46204 -34.82604 -33.83705 -33.63557 -31.55875 -30.37879 -30.15674 -28.49396 -27.60201 -25.93666 -24.59341 -22.41376 -22.25391 -21.55660 -20.67639 -19.85219 -18.39014 -18.17595 -17.66594 -16.79748 -16.51325 -16.00568 -15.77002 -15.23916 -14.92741 -14.71873 -14.47658 -14.13540 -14.01888 -13.98557 -13.32771 -13.08859 -12.86074 -12.77774 -12.57103 -12.45626 -12.22909 -12.03345 -11.74905 -11.48526 -11.39771 -11.04594 -10.91306 -10.73734 -10.44852 -9.83072 -9.66997 -9.39700 -9.29557 -9.09334 -8.87218 -8.71591 -8.43559 -7.67422 -7.30037 -6.88157 -4.46838 0.94948 1.14976 2.63310 2.79518 3.02084 3.16229 3.23374 3.36750 3.56317 3.62539 3.82937 4.03681 4.40795 4.52835 4.60734 4.72409 4.80731 4.86820 4.88943 5.03245 5.06908 5.24171 5.34136 5.47874 5.52649 5.61645 5.88423 6.01463 6.16810 6.18886 6.25854 6.27634 6.45335 6.48990 6.66348 6.85830 6.91399 7.06672 7.11345 7.25306 7.44082 7.59438 7.69301 7.84675 7.94954 8.02929 8.38008 8.54483 8.65671 8.80529 9.20066 10.01079 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003019 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.224938 B = 9271.828547 C = 9853.096000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.145 3.855 4 C -0.214 4.214 5 C -0.075 4.075 6 C -0.161 4.161 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.193 3.807 10 N -0.743 5.743 11 C 0.696 3.304 12 O -0.585 6.585 13 N -0.654 5.654 14 C 0.048 3.952 15 C -0.097 4.097 16 C -0.227 4.227 17 C -0.093 4.093 18 C -0.234 4.234 19 C 0.083 3.917 20 C -0.526 4.526 21 H 0.073 0.927 22 C 0.046 3.954 23 N -0.817 5.817 24 Si 1.075 2.925 25 H -0.276 1.276 26 H -0.263 1.263 27 H -0.292 1.292 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.402 0.598 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 11.334 12.225 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.099 3.901 4 C -0.232 4.232 5 C -0.093 4.093 6 C -0.180 4.180 7 C -0.080 4.080 8 C -0.139 4.139 9 C 0.069 3.931 10 N -0.399 5.399 11 C 0.397 3.603 12 O -0.464 6.464 13 N -0.298 5.298 14 C -0.046 4.046 15 C -0.117 4.117 16 C -0.247 4.247 17 C -0.112 4.112 18 C -0.254 4.254 19 C 0.079 3.921 20 C -0.555 4.555 21 H 0.091 0.909 22 C -0.173 4.173 23 N -0.440 5.440 24 Si 0.902 3.098 25 H -0.203 1.203 26 H -0.188 1.188 27 H -0.220 1.220 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.237 0.763 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.841 9.615 11.835 18.710 hybrid contribution -0.347 2.101 0.391 2.165 sum -11.188 11.716 12.226 20.295 Atomic orbital electron populations 1.23091 0.78332 1.04254 1.01159 1.86190 1.21314 1.26341 1.87997 1.18931 0.91748 0.84499 0.94912 1.21248 1.00105 0.92330 1.09541 1.20982 0.94740 0.96959 0.96626 1.21070 0.93901 0.98463 1.04521 1.21014 1.00261 0.90842 0.95846 1.19333 0.90613 0.95780 1.08206 1.19727 0.98477 0.91070 0.83782 1.45095 1.57243 1.27197 1.10398 1.15960 0.80081 0.80578 0.83649 1.90783 1.50502 1.60819 1.44315 1.42068 1.59622 1.20853 1.07281 1.17554 1.05990 0.85871 0.95212 1.21198 0.99195 0.92549 0.98799 1.20347 1.10323 0.98012 0.95985 1.20363 0.99559 0.97847 0.93398 1.20674 1.09183 0.97088 0.98419 1.17451 0.90698 0.92840 0.91136 1.20325 1.47349 0.95151 0.92671 0.90896 1.27219 0.90703 1.07692 0.91688 1.70574 1.30707 1.08031 1.34668 0.83570 0.77808 0.72494 0.75972 1.20291 1.18803 1.21970 0.88034 0.92715 0.92586 0.85372 0.85786 0.85702 0.84981 0.90681 0.91057 0.77366 0.76283 0.84957 0.88744 0.88910 0.87472 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.53 9.74 -19.41 -0.19 -3.72 16 3 C 0.15 1.61 6.66 -39.22 -0.26 1.35 16 4 C -0.21 -1.92 9.04 -39.43 -0.36 -2.27 16 5 C -0.07 -0.61 10.04 -39.60 -0.40 -1.01 16 6 C -0.16 -1.37 10.04 -39.56 -0.40 -1.76 16 7 C -0.06 -0.60 9.67 -39.60 -0.38 -0.98 16 8 C -0.14 -1.58 5.26 -104.48 -0.55 -2.13 16 9 C 0.19 2.65 5.46 -5.19 -0.03 2.62 16 10 N -0.74 -11.49 5.55 -66.41 -0.37 -11.85 16 11 C 0.70 13.96 8.40 -86.92 -0.73 13.23 16 12 O -0.59 -13.49 13.23 5.29 0.07 -13.42 16 13 N -0.65 -13.92 5.19 -13.83 -0.07 -13.99 16 14 C 0.05 1.19 6.54 -83.17 -0.54 0.64 16 15 C -0.10 -2.34 8.78 -39.44 -0.35 -2.69 16 16 C -0.23 -5.19 10.04 -39.36 -0.40 -5.58 16 17 C -0.09 -2.12 9.96 -39.99 -0.40 -2.52 16 18 C -0.23 -5.80 7.33 -39.28 -0.29 -6.09 16 19 C 0.08 2.14 5.18 -106.65 -0.55 1.59 16 20 C -0.53 -13.70 8.75 -37.87 -0.33 -14.03 16 21 H 0.07 1.91 7.20 -52.48 -0.38 1.53 16 22 C 0.05 1.20 5.38 -17.33 -0.09 1.10 16 23 N -0.82 -21.55 13.66 55.55 0.76 -20.79 16 24 Si 1.07 24.28 25.01 -169.99 -4.25 20.03 16 25 H -0.28 -5.99 6.37 56.52 0.36 -5.63 16 26 H -0.26 -5.95 7.10 56.52 0.40 -5.55 16 27 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 31 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 32 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.13 8.04 -52.49 -0.42 0.70 16 35 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 36 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 37 H 0.39 5.37 8.48 -40.82 -0.35 5.02 16 38 H 0.40 7.90 7.34 -40.82 -0.30 7.60 16 39 H 0.13 3.23 5.40 -52.49 -0.28 2.94 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 2.61 4.35 -52.49 -0.23 2.38 16 43 H 0.28 7.29 8.73 -40.82 -0.36 6.93 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -31.31 356.68 -8.95 -40.26 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -5.21 Total: 15.46 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -5.06 Total: -17.34 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.32 Total: -46.64 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.12 Total: -17.14 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.25 Total: 20.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.31 -8.95 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186135351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.495 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds