Wall clock time and date at job start Tue Mar 31 2020 14:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 117.00089 * 2 1 4 4 C 1.38756 * 120.05427 * 0.25113 * 3 2 1 5 5 C 1.38125 * 119.94151 * 180.31761 * 4 3 2 6 6 C 1.38293 * 120.05847 * 359.68716 * 5 4 3 7 7 C 1.38251 * 120.10753 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05617 * 0.02697 * 7 6 5 9 9 C 1.50696 * 120.02682 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46972 * 259.99839 * 9 8 7 11 11 C 1.34773 * 119.99787 * 180.02562 * 10 9 8 12 12 O 1.21583 * 120.00074 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99712 * 179.97438 * 11 10 9 14 14 C 1.39130 * 119.99951 * 185.90773 * 13 11 10 15 15 C 1.38653 * 120.28616 * 19.23480 * 14 13 11 16 16 C 1.38217 * 120.03360 * 180.27481 * 15 14 13 17 17 C 1.38861 * 120.61725 * 359.71989 * 16 15 14 18 18 C 1.36464 * 120.57922 * 359.97438 * 17 16 15 19 19 C 1.40735 * 119.94011 * 0.02562 * 18 17 16 20 20 C 1.41074 * 120.29771 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99551 * 206.44039 * 20 19 18 22 22 C 1.39947 * 120.00308 * 26.44050 * 20 19 18 23 23 N 1.30861 * 119.99860 * 201.33352 * 22 20 19 24 24 Si 1.86794 * 120.00040 * 21.33151 * 22 20 19 25 25 H 1.48506 * 109.46859 * 270.00091 * 24 22 20 26 26 H 1.48504 * 109.47182 * 29.99875 * 24 22 20 27 27 H 1.48500 * 109.47432 * 150.00152 * 24 22 20 28 28 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47016 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.46953 * 59.99797 * 1 2 3 31 31 H 1.07999 * 120.03282 * 0.02885 * 4 3 2 32 32 H 1.08002 * 119.97787 * 179.70618 * 5 4 3 33 33 H 1.07990 * 119.94782 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.96839 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47037 * 140.00340 * 9 8 7 36 36 H 1.08997 * 109.47639 * 19.99427 * 9 8 7 37 37 H 0.96991 * 120.00030 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00182 * 5.90781 * 13 11 10 39 39 H 1.07999 * 119.98077 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.69109 * 179.73976 * 16 15 14 41 41 H 1.08002 * 119.71480 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.02939 * 180.02562 * 18 17 16 43 43 H 0.97000 * 120.00281 * 354.93515 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0014 6 6 3.3020 3.6758 -0.0067 7 6 4.0561 2.5170 -0.0060 8 6 3.4312 1.2848 -0.0004 9 6 4.2537 0.0221 -0.0002 10 7 4.3142 -0.5215 -1.3593 11 6 5.0003 -1.6560 -1.6014 12 8 5.5687 -2.2286 -0.6917 13 7 5.0555 -2.1564 -2.8516 14 6 5.6579 -3.3893 -3.0815 15 6 5.8434 -4.2825 -2.0373 16 6 6.4475 -5.5035 -2.2705 17 6 6.8688 -5.8518 -3.5470 18 6 6.6932 -4.9945 -4.5941 19 6 6.0808 -3.7450 -4.3837 20 6 5.8949 -2.8532 -5.4609 21 1 5.8387 -1.7901 -5.2782 22 6 5.7834 -3.3458 -6.7660 23 7 6.0279 -2.5613 -7.7845 24 14 5.2856 -5.1229 -7.0542 25 1 6.5004 -5.9758 -7.1015 26 1 4.4054 -5.5762 -5.9474 27 1 4.5554 -5.2298 -8.3429 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2129 2.3204 0.0098 32 1 1.3341 4.5114 -0.0021 33 1 3.7923 4.6380 -0.0115 34 1 5.1344 2.5751 -0.0106 35 1 3.7949 -0.7103 0.6639 36 1 5.2625 0.2456 0.3468 37 1 3.8599 -0.0654 -2.0848 38 1 4.6753 -1.6571 -3.5911 39 1 5.5192 -4.0223 -1.0405 40 1 6.5930 -6.1933 -1.4523 41 1 7.3389 -6.8100 -3.7128 42 1 7.0239 -5.2747 -5.5833 43 1 6.2145 -1.6207 -7.6385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186135351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:31 Heat of formation + Delta-G solvation = -34.323093 kcal Electronic energy + Delta-G solvation = -26649.682506 eV Core-core repulsion = 22852.245330 eV Total energy + Delta-G solvation = -3797.437175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67567 -41.11423 -39.35578 -38.40756 -36.12432 -35.65379 -35.48416 -32.57256 -32.06719 -31.09116 -30.15654 -28.28542 -27.12845 -26.39377 -23.92069 -23.11399 -22.65870 -22.25652 -21.56870 -20.12181 -19.43327 -18.95131 -18.38029 -17.34688 -17.03180 -16.65075 -16.56986 -16.42363 -16.18743 -15.78390 -15.63239 -15.35405 -15.01826 -14.78711 -14.58659 -14.33237 -13.98967 -13.92792 -13.80786 -13.50564 -13.33068 -12.87535 -12.70216 -12.58180 -12.41562 -12.23740 -12.04121 -11.76918 -11.66834 -11.48319 -11.20808 -10.98115 -10.67623 -10.16586 -9.94358 -9.61187 -9.26072 -9.19705 -8.72019 -6.45208 0.19613 0.43661 0.78888 0.88648 1.42033 1.57876 1.79102 1.82727 2.16137 2.22100 2.35103 2.68427 2.77431 3.38461 3.56476 3.59666 3.82236 4.03343 4.23489 4.31725 4.36152 4.37519 4.41157 4.46712 4.53621 4.61205 4.69835 4.70677 4.78879 4.91785 4.98753 5.03141 5.26063 5.32025 5.38750 5.45235 5.47753 5.52098 5.55088 5.69020 5.81686 5.93986 6.05197 6.08087 6.18914 6.41104 6.43845 6.66843 6.83743 7.08228 7.56235 8.02822 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003019 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.224938 B = 9271.828547 C = 9853.096000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.071 4.071 6 C -0.162 4.162 7 C -0.068 4.068 8 C -0.158 4.158 9 C 0.198 3.802 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.616 6.616 13 N -0.656 5.656 14 C 0.042 3.958 15 C -0.115 4.115 16 C -0.217 4.217 17 C -0.096 4.096 18 C -0.245 4.245 19 C 0.060 3.940 20 C -0.543 4.543 21 H 0.058 0.942 22 C 0.019 3.981 23 N -0.839 5.839 24 Si 1.102 2.898 25 H -0.259 1.259 26 H -0.266 1.266 27 H -0.282 1.282 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.403 0.597 38 H 0.407 0.593 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 11.644 13.024 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.084 3.916 4 C -0.234 4.234 5 C -0.089 4.089 6 C -0.180 4.180 7 C -0.086 4.086 8 C -0.159 4.159 9 C 0.074 3.926 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.497 6.497 13 N -0.301 5.301 14 C -0.053 4.053 15 C -0.136 4.136 16 C -0.237 4.237 17 C -0.115 4.115 18 C -0.265 4.265 19 C 0.055 3.945 20 C -0.573 4.573 21 H 0.076 0.924 22 C -0.196 4.196 23 N -0.463 5.463 24 Si 0.925 3.075 25 H -0.185 1.185 26 H -0.191 1.191 27 H -0.209 1.209 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.243 0.757 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.128 0.872 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.774 9.978 12.639 19.949 hybrid contribution -0.108 2.075 0.332 2.105 sum -11.882 12.053 12.972 21.325 Atomic orbital electron populations 1.23315 0.76583 1.05139 1.02468 1.86143 1.23338 1.27119 1.88240 1.19123 0.91778 0.85139 0.95530 1.21527 1.01171 0.91879 1.08812 1.21397 0.94910 0.97739 0.94810 1.21390 0.94282 0.98866 1.03492 1.21179 1.00899 0.90785 0.95740 1.19200 0.90852 0.95084 1.10744 1.19725 0.98775 0.91928 0.82125 1.45039 1.55608 1.25562 1.11688 1.16097 0.80150 0.81360 0.82796 1.90747 1.51948 1.62055 1.44989 1.42046 1.59659 1.20342 1.08017 1.17789 1.05534 0.86929 0.95071 1.21366 1.00211 0.93402 0.98579 1.20766 1.08216 0.97645 0.97060 1.20725 0.99092 0.99023 0.92640 1.20898 1.09102 0.97121 0.99347 1.17648 0.91705 0.93658 0.91452 1.20306 1.48995 0.94612 0.93403 0.92430 1.28105 0.90094 1.09970 0.91431 1.70635 1.32760 1.07976 1.34941 0.83222 0.78258 0.69922 0.76143 1.18528 1.19058 1.20927 0.87513 0.91057 0.91524 0.83314 0.82829 0.83361 0.84314 0.92325 0.91257 0.76183 0.75690 0.85355 0.85776 0.85236 0.87188 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.68 9.74 -92.37 -0.90 -8.58 16 3 C 0.13 2.79 6.66 22.51 0.15 2.94 16 4 C -0.22 -3.41 9.04 22.37 0.20 -3.21 16 5 C -0.07 -0.94 10.04 22.26 0.22 -0.71 16 6 C -0.16 -2.35 10.04 22.29 0.22 -2.13 16 7 C -0.07 -1.25 9.67 22.26 0.22 -1.03 16 8 C -0.16 -3.57 5.26 -19.77 -0.10 -3.67 16 9 C 0.20 5.56 5.46 85.63 0.47 6.02 16 10 N -0.72 -22.83 5.55 -482.29 -2.68 -25.51 16 11 C 0.69 28.46 8.40 179.05 1.50 29.97 16 12 O -0.62 -28.97 13.23 -3.98 -0.05 -29.02 16 13 N -0.66 -28.55 5.19 -315.94 -1.64 -30.19 16 14 C 0.04 2.09 6.54 38.88 0.25 2.35 16 15 C -0.11 -5.50 8.78 22.36 0.20 -5.31 16 16 C -0.22 -9.46 10.04 22.41 0.22 -9.23 16 17 C -0.10 -4.14 9.96 22.00 0.22 -3.93 16 18 C -0.25 -11.85 7.33 22.47 0.16 -11.68 16 19 C 0.06 3.09 5.18 -21.18 -0.11 2.98 16 20 C -0.54 -28.94 8.75 23.38 0.20 -28.73 16 21 H 0.06 3.13 7.20 -2.91 -0.02 3.11 16 22 C 0.02 0.97 5.38 85.25 0.46 1.43 16 23 N -0.84 -44.96 13.66 21.83 0.30 -44.66 16 24 Si 1.10 48.30 25.01 68.60 1.72 50.01 16 25 H -0.26 -10.61 6.37 99.48 0.63 -9.97 16 26 H -0.27 -11.65 7.10 99.48 0.71 -10.95 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 30 H 0.07 0.76 7.67 -2.39 -0.02 0.75 16 31 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 32 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.15 1.42 8.06 -2.92 -0.02 1.40 16 34 H 0.14 2.26 8.04 -2.91 -0.02 2.24 16 35 H 0.06 1.84 7.86 -2.39 -0.02 1.82 16 36 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 37 H 0.40 11.18 8.48 -92.71 -0.79 10.40 16 38 H 0.41 16.53 7.34 -92.71 -0.68 15.85 16 39 H 0.13 6.27 5.40 -2.91 -0.02 6.26 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.11 5.19 4.35 -2.91 -0.01 5.18 16 43 H 0.28 14.72 8.73 -92.71 -0.81 13.92 16 Total: -1.00 -67.64 356.68 1.84 -65.80 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -0.51 Total: 44.70 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.61 Total: -22.56 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.02 Total: -100.35 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.95 Total: -37.60 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.72 Total: 50.01 kcal Total: -67.64 1.84 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186135351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.478 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds