Wall clock time and date at job start Tue Mar 31 2020 14:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99721 * 2 1 4 4 C 1.38757 * 120.05371 * 359.73140 * 3 2 1 5 5 C 1.38126 * 119.93880 * 179.70210 * 4 3 2 6 6 C 1.38289 * 120.05858 * 0.58918 * 5 4 3 7 7 C 1.38244 * 120.10706 * 359.68275 * 6 5 4 8 8 C 1.50701 * 119.97058 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47297 * 269.97664 * 8 7 6 10 10 C 1.34776 * 120.00167 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00123 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99865 * 180.02562 * 10 9 8 13 13 C 1.39953 * 119.99866 * 174.85699 * 12 10 9 14 14 C 1.39281 * 119.94749 * 145.76840 * 13 12 10 15 15 C 1.38490 * 120.42973 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.31964 * 359.97290 * 15 14 13 17 17 C 1.40736 * 119.88333 * 0.02562 * 16 15 14 18 18 C 1.41411 * 120.21039 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99875 * 205.17382 * 18 17 16 20 20 C 1.39928 * 119.99858 * 25.17854 * 18 17 16 21 21 N 1.30830 * 120.00277 * 16.78507 * 20 18 17 22 22 Si 1.86799 * 120.00002 * 196.78242 * 20 18 17 23 23 H 1.48501 * 109.47250 * 60.00166 * 22 20 18 24 24 H 1.48500 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47146 * 299.99830 * 22 20 18 26 26 C 1.38240 * 119.94361 * 325.49328 * 13 12 10 27 27 C 1.38163 * 120.05833 * 0.02562 * 7 6 5 28 28 H 1.08993 * 109.47101 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46944 * 299.99677 * 1 2 3 31 31 H 1.07997 * 120.03199 * 359.96432 * 4 3 2 32 32 H 1.08004 * 119.97191 * 180.29310 * 5 4 3 33 33 H 1.07992 * 119.94757 * 179.70722 * 6 5 4 34 34 H 1.09002 * 109.46996 * 29.97742 * 8 7 6 35 35 H 1.09001 * 109.47121 * 149.97330 * 8 7 6 36 36 H 0.97001 * 119.99565 * 0.02562 * 9 8 7 37 37 H 0.97002 * 119.99758 * 354.85336 * 12 10 9 38 38 H 1.08000 * 119.78820 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.84348 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.05518 * 179.97438 * 16 15 14 41 41 H 0.97001 * 120.00354 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16079 * 359.97438 * 26 13 12 43 43 H 1.08007 * 120.02914 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0056 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0001 7 6 4.0558 2.5172 0.0001 8 6 5.5606 2.5983 0.0001 9 7 6.0484 2.6242 -1.3810 10 6 7.3715 2.6959 -1.6272 11 8 8.1604 2.7387 -0.7030 12 7 7.8202 2.7203 -2.8980 13 6 9.1837 2.9030 -3.1553 14 6 9.7773 2.2673 -4.2431 15 6 11.1258 2.4407 -4.5067 16 6 11.8948 3.2447 -3.6955 17 6 11.3087 3.8935 -2.5927 18 6 12.0921 4.7204 -1.7547 19 1 11.7955 4.8860 -0.7295 20 6 13.2516 5.3241 -2.2539 21 7 13.4432 5.4043 -3.5456 22 14 14.5258 6.0157 -1.0759 23 1 15.0352 4.9276 -0.2031 24 1 15.6519 6.5967 -1.8502 25 1 13.9035 7.0721 -0.2381 26 6 9.9379 3.7187 -2.3326 27 6 3.4310 1.2849 -0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3203 -0.0106 32 1 1.3338 4.5114 0.0010 33 1 3.7920 4.6381 0.0002 34 1 5.8755 3.5067 0.5137 35 1 5.9713 1.7294 0.5143 36 1 5.4190 2.5904 -2.1183 37 1 7.1980 2.6110 -3.6341 38 1 9.1823 1.6343 -4.8848 39 1 11.5763 1.9435 -5.3530 40 1 12.9460 3.3766 -3.9047 41 1 14.2468 5.8232 -3.8916 42 1 9.4774 4.2160 -1.4916 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186205469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:39 Heat of formation + Delta-G solvation = -17.185242 kcal Electronic energy + Delta-G solvation = -25604.178244 eV Core-core repulsion = 21807.484222 eV Total energy + Delta-G solvation = -3796.694023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55641 -39.81172 -38.08962 -37.20373 -34.77988 -34.23733 -32.97360 -31.52427 -30.63639 -29.74343 -28.12104 -27.66283 -25.83664 -25.18917 -22.88115 -21.86668 -21.25104 -20.78006 -20.00813 -18.43496 -17.84356 -17.39573 -16.64122 -16.32127 -16.12960 -15.81638 -15.36042 -15.01963 -14.61585 -14.51406 -14.30808 -14.11736 -13.88328 -13.32166 -13.10485 -12.94882 -12.82050 -12.55971 -12.29976 -12.05033 -11.83125 -11.58153 -11.47129 -11.15435 -11.13439 -11.05225 -10.84501 -10.43493 -10.15088 -9.68174 -9.47324 -9.24856 -9.04769 -8.93799 -8.86872 -8.54454 -7.37108 -6.81898 -6.63592 -4.26486 0.86938 1.11615 2.79640 2.87200 2.95219 3.09008 3.12908 3.17176 3.28822 3.54450 3.78383 4.01890 4.38033 4.42959 4.66952 4.68803 4.72334 4.72585 4.73942 5.00181 5.01155 5.07490 5.17538 5.47663 5.64972 5.75055 5.80184 5.93241 6.08634 6.29124 6.30902 6.39209 6.47157 6.57598 6.85536 6.87101 7.02715 7.11522 7.16436 7.31530 7.42358 7.76093 7.90530 8.07086 8.18078 8.32205 8.50733 8.73677 8.97212 9.04713 9.11760 10.28552 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002105 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.134555 B =13301.622276 C =14030.850717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.204 4.204 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.064 4.064 8 C 0.181 3.819 9 N -0.747 5.747 10 C 0.699 3.301 11 O -0.566 6.566 12 N -0.681 5.681 13 C 0.169 3.831 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.173 4.173 17 C 0.120 3.880 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.797 5.797 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.209 4.209 27 C -0.132 4.132 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.107 0.893 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.099 -5.353 3.940 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.223 4.223 5 C -0.101 4.101 6 C -0.155 4.155 7 C -0.064 4.064 8 C 0.057 3.943 9 N -0.405 5.405 10 C 0.399 3.601 11 O -0.441 6.441 12 N -0.327 5.327 13 C 0.077 3.923 14 C -0.285 4.285 15 C -0.111 4.111 16 C -0.193 4.193 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.423 5.423 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.231 4.231 27 C -0.151 4.151 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.227 0.773 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.127 -5.391 4.667 24.201 hybrid contribution -0.469 0.411 -0.325 0.703 sum -23.596 -4.980 4.342 24.504 Atomic orbital electron populations 1.23059 0.78347 1.04024 1.01322 1.86090 1.21401 1.26879 1.88735 1.18999 0.92255 0.84221 0.96769 1.21283 1.00045 0.92459 1.08475 1.20954 0.94543 0.97050 0.97521 1.21087 0.93704 0.98313 1.02356 1.19734 0.95230 0.92447 0.99036 1.19977 0.87683 1.03495 0.83151 1.45115 1.05699 1.81621 1.08048 1.15949 0.82029 0.78258 0.83850 1.90983 1.54142 1.55931 1.43032 1.42578 1.08519 1.75899 1.05736 1.17225 0.80375 0.97371 0.97320 1.20008 0.95724 1.09772 1.02970 1.20444 0.93169 0.98986 0.98529 1.21328 0.99828 0.99780 0.98379 1.17489 0.90053 0.89486 0.91297 1.19541 1.05655 1.24966 0.98631 0.90433 1.25894 0.98341 0.94564 0.95356 1.69824 1.25719 1.33563 1.13150 0.86369 0.79686 0.79713 0.80932 1.18835 1.20443 1.19057 1.21000 0.94136 1.04629 1.03322 1.20389 0.91338 0.98400 1.04960 0.92628 0.88186 0.92649 0.85499 0.85548 0.85359 0.90356 0.90565 0.77290 0.77284 0.89396 0.89102 0.86371 0.90975 0.87530 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.93 10.50 -19.43 -0.20 -3.13 16 3 C 0.12 1.17 6.69 -39.22 -0.26 0.91 16 4 C -0.20 -1.63 9.04 -39.43 -0.36 -1.98 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.14 -1.22 9.70 -39.56 -0.38 -1.60 16 7 C -0.06 -0.64 5.25 -104.65 -0.55 -1.19 16 8 C 0.18 2.18 5.80 -5.20 -0.03 2.14 16 9 N -0.75 -9.90 5.55 -66.41 -0.37 -10.27 16 10 C 0.70 12.99 8.29 -86.91 -0.72 12.27 16 11 O -0.57 -13.21 14.10 5.29 0.07 -13.14 16 12 N -0.68 -12.57 5.34 -14.27 -0.08 -12.64 16 13 C 0.17 3.95 6.25 -83.76 -0.52 3.43 16 14 C -0.26 -5.94 9.97 -39.10 -0.39 -6.33 16 15 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 16 C -0.17 -4.65 8.69 -38.84 -0.34 -4.99 16 17 C 0.12 3.37 5.57 -106.85 -0.59 2.78 16 18 C -0.46 -12.84 9.05 -37.74 -0.34 -13.19 16 19 H 0.08 2.14 7.90 -52.48 -0.41 1.73 16 20 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 21 N -0.80 -21.11 10.94 55.55 0.61 -20.50 16 22 Si 0.91 19.47 29.59 -169.99 -5.03 14.44 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.21 -5.58 8.39 -38.68 -0.32 -5.90 16 27 C -0.13 -1.33 9.64 -39.44 -0.38 -1.71 16 28 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.39 4.13 8.48 -40.82 -0.35 3.78 16 37 H 0.39 5.64 8.84 -40.82 -0.36 5.28 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 41 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 42 H 0.11 2.94 6.48 -52.49 -0.34 2.60 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -33.18 367.07 -9.98 -43.15 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.42 Total: 12.56 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -5.09 Total: -16.00 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.16 Total: -43.42 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.13 Total: -16.27 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.18 -9.98 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186205469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.969 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds