Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99721 * 2 1 4 4 C 1.38757 * 120.05371 * 359.73140 * 3 2 1 5 5 C 1.38126 * 119.93880 * 179.70210 * 4 3 2 6 6 C 1.38289 * 120.05858 * 0.58918 * 5 4 3 7 7 C 1.38244 * 120.10706 * 359.68275 * 6 5 4 8 8 C 1.50701 * 119.97058 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47297 * 269.97664 * 8 7 6 10 10 C 1.34776 * 120.00167 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00123 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99865 * 180.02562 * 10 9 8 13 13 C 1.39953 * 119.99866 * 174.85699 * 12 10 9 14 14 C 1.39281 * 119.94749 * 145.76840 * 13 12 10 15 15 C 1.38490 * 120.42973 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.31964 * 359.97290 * 15 14 13 17 17 C 1.40736 * 119.88333 * 0.02562 * 16 15 14 18 18 C 1.41411 * 120.21039 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99875 * 205.17382 * 18 17 16 20 20 C 1.39928 * 119.99858 * 25.17854 * 18 17 16 21 21 N 1.30830 * 120.00277 * 16.78507 * 20 18 17 22 22 Si 1.86799 * 120.00002 * 196.78242 * 20 18 17 23 23 H 1.48501 * 109.47250 * 60.00166 * 22 20 18 24 24 H 1.48500 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47146 * 299.99830 * 22 20 18 26 26 C 1.38240 * 119.94361 * 325.49328 * 13 12 10 27 27 C 1.38163 * 120.05833 * 0.02562 * 7 6 5 28 28 H 1.08993 * 109.47101 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46944 * 299.99677 * 1 2 3 31 31 H 1.07997 * 120.03199 * 359.96432 * 4 3 2 32 32 H 1.08004 * 119.97191 * 180.29310 * 5 4 3 33 33 H 1.07992 * 119.94757 * 179.70722 * 6 5 4 34 34 H 1.09002 * 109.46996 * 29.97742 * 8 7 6 35 35 H 1.09001 * 109.47121 * 149.97330 * 8 7 6 36 36 H 0.97001 * 119.99565 * 0.02562 * 9 8 7 37 37 H 0.97002 * 119.99758 * 354.85336 * 12 10 9 38 38 H 1.08000 * 119.78820 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.84348 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.05518 * 179.97438 * 16 15 14 41 41 H 0.97001 * 120.00354 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16079 * 359.97438 * 26 13 12 43 43 H 1.08007 * 120.02914 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0056 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0001 7 6 4.0558 2.5172 0.0001 8 6 5.5606 2.5983 0.0001 9 7 6.0484 2.6242 -1.3810 10 6 7.3715 2.6959 -1.6272 11 8 8.1604 2.7387 -0.7030 12 7 7.8202 2.7203 -2.8980 13 6 9.1837 2.9030 -3.1553 14 6 9.7773 2.2673 -4.2431 15 6 11.1258 2.4407 -4.5067 16 6 11.8948 3.2447 -3.6955 17 6 11.3087 3.8935 -2.5927 18 6 12.0921 4.7204 -1.7547 19 1 11.7955 4.8860 -0.7295 20 6 13.2516 5.3241 -2.2539 21 7 13.4432 5.4043 -3.5456 22 14 14.5258 6.0157 -1.0759 23 1 15.0352 4.9276 -0.2031 24 1 15.6519 6.5967 -1.8502 25 1 13.9035 7.0721 -0.2381 26 6 9.9379 3.7187 -2.3326 27 6 3.4310 1.2849 -0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3203 -0.0106 32 1 1.3338 4.5114 0.0010 33 1 3.7920 4.6381 0.0002 34 1 5.8755 3.5067 0.5137 35 1 5.9713 1.7294 0.5143 36 1 5.4190 2.5904 -2.1183 37 1 7.1980 2.6110 -3.6341 38 1 9.1823 1.6343 -4.8848 39 1 11.5763 1.9435 -5.3530 40 1 12.9460 3.3766 -3.9047 41 1 14.2468 5.8232 -3.8916 42 1 9.4774 4.2160 -1.4916 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186205469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -38.349461 kcal Electronic energy + Delta-G solvation = -25605.095994 eV Core-core repulsion = 21807.484222 eV Total energy + Delta-G solvation = -3797.611772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53262 -41.03406 -39.26001 -38.58354 -36.27701 -35.75957 -34.80097 -32.41448 -31.72267 -31.36132 -29.76767 -28.21139 -27.26851 -26.79129 -23.59597 -23.37221 -22.70879 -22.11039 -21.65050 -19.62119 -19.50584 -18.57875 -17.52013 -17.32470 -17.09629 -16.95714 -16.64231 -16.49189 -16.31338 -15.98349 -15.63289 -15.07978 -14.93704 -14.65144 -14.60924 -14.11107 -14.00315 -13.65442 -13.51415 -13.47199 -12.97452 -12.90437 -12.82194 -12.75525 -12.52620 -12.16980 -12.04083 -11.96507 -11.78174 -11.55196 -11.25163 -10.98617 -10.78469 -10.16356 -9.96137 -9.36726 -9.21329 -8.70631 -8.56268 -6.34387 0.14605 0.43739 0.95528 1.05779 1.37068 1.48512 1.52888 1.75387 2.18912 2.22728 2.34566 2.74640 2.77241 3.38297 3.59929 3.77012 3.84132 4.08489 4.19893 4.30819 4.35149 4.40806 4.49376 4.50603 4.64370 4.66673 4.74345 4.76145 5.01046 5.07150 5.12393 5.14816 5.21123 5.27692 5.34302 5.38683 5.43214 5.57242 5.72430 5.75630 5.85241 6.07875 6.13652 6.20381 6.39045 6.43293 6.71157 6.96680 7.03425 7.09727 7.59552 8.35483 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002105 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.134555 B =13301.622276 C =14030.850717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.113 3.887 4 C -0.199 4.199 5 C -0.079 4.079 6 C -0.142 4.142 7 C -0.067 4.067 8 C 0.183 3.817 9 N -0.722 5.722 10 C 0.696 3.304 11 O -0.617 6.617 12 N -0.670 5.670 13 C 0.177 3.823 14 C -0.252 4.252 15 C -0.090 4.090 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.502 4.502 19 H 0.062 0.938 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.263 1.263 26 C -0.236 4.236 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.417 0.583 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.289 0.711 42 H 0.084 0.916 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.411 -5.638 3.024 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.068 3.932 4 C -0.217 4.217 5 C -0.097 4.097 6 C -0.161 4.161 7 C -0.068 4.068 8 C 0.059 3.941 9 N -0.379 5.379 10 C 0.397 3.603 11 O -0.496 6.496 12 N -0.318 5.318 13 C 0.083 3.917 14 C -0.273 4.273 15 C -0.109 4.109 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.532 4.532 19 H 0.080 0.920 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.802 3.198 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.187 1.187 26 C -0.258 4.258 27 C -0.165 4.165 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.255 0.745 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.539 -5.694 3.706 26.427 hybrid contribution 0.007 0.399 -0.079 0.407 sum -25.532 -5.295 3.628 26.326 Atomic orbital electron populations 1.23351 0.76304 1.05547 1.02414 1.86064 1.23602 1.26944 1.88712 1.19123 0.92162 0.85051 0.96899 1.21596 1.01345 0.91808 1.06968 1.21268 0.94106 0.98136 0.96217 1.21231 0.94491 0.98049 1.02297 1.19446 0.93561 0.93089 1.00719 1.19983 0.89406 1.02660 0.82019 1.44906 1.03933 1.79604 1.09427 1.16149 0.83184 0.77849 0.83164 1.90961 1.55999 1.58111 1.44551 1.42327 1.07208 1.75551 1.06707 1.17286 0.82232 0.95753 0.96458 1.20436 0.95567 1.08802 1.02521 1.20827 0.93732 0.97765 0.98574 1.21296 0.99670 1.01615 0.99329 1.17840 0.90956 0.90319 0.92323 1.19699 1.07973 1.27195 0.98334 0.91974 1.26695 0.99554 0.94339 0.97163 1.69853 1.26559 1.33810 1.14561 0.85279 0.77074 0.78883 0.78577 1.18777 1.18381 1.18719 1.20952 0.94318 1.06612 1.03955 1.20397 0.92093 0.98130 1.05895 0.91451 0.86659 0.91514 0.82969 0.82885 0.84815 0.91166 0.91535 0.75210 0.74499 0.85086 0.85830 0.87763 0.90011 0.89816 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.77 10.50 -92.43 -0.97 -6.74 16 3 C 0.11 1.99 6.69 22.51 0.15 2.14 16 4 C -0.20 -2.63 9.04 22.37 0.20 -2.42 16 5 C -0.08 -1.03 10.04 22.26 0.22 -0.80 16 6 C -0.14 -2.32 9.70 22.28 0.22 -2.11 16 7 C -0.07 -1.31 5.25 -19.88 -0.10 -1.41 16 8 C 0.18 4.46 5.80 85.63 0.50 4.96 16 9 N -0.72 -18.76 5.55 -482.30 -2.68 -21.43 16 10 C 0.70 26.01 8.29 179.05 1.48 27.50 16 11 O -0.62 -30.01 14.10 -3.98 -0.06 -30.07 16 12 N -0.67 -24.02 5.34 -317.32 -1.70 -25.72 16 13 C 0.18 8.20 6.25 38.10 0.24 8.44 16 14 C -0.25 -10.84 9.97 22.58 0.23 -10.61 16 15 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 16 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 17 C 0.09 5.22 5.57 -21.31 -0.12 5.10 16 18 C -0.50 -29.80 9.05 23.46 0.21 -29.59 16 19 H 0.06 3.71 7.90 -2.91 -0.02 3.68 16 20 C 0.04 2.00 5.16 85.25 0.44 2.44 16 21 N -0.82 -44.59 10.94 21.82 0.24 -44.35 16 22 Si 0.98 40.84 29.59 68.60 2.03 42.87 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.24 -13.16 8.39 22.85 0.19 -12.97 16 27 C -0.15 -2.87 9.64 22.36 0.22 -2.65 16 28 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.37 7.67 -2.39 -0.02 0.35 16 31 H 0.15 1.18 6.30 -2.91 -0.02 1.16 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 36 H 0.41 7.94 8.48 -92.71 -0.79 7.15 16 37 H 0.42 10.87 8.84 -92.71 -0.82 10.05 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.92 6.17 -2.91 -0.02 5.90 16 41 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 42 H 0.08 4.95 6.48 -2.91 -0.02 4.93 16 43 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -76.25 367.07 1.93 -74.32 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.54 Total: 36.60 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 5.60 Total: -25.48 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.14 Total: -91.50 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.03 Total: -36.81 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -76.25 1.93 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186205469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.975 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds