Wall clock time and date at job start Tue Mar 31 2020 14:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35910 * 116.99716 * 2 1 4 4 C 1.39142 * 120.47412 * 179.97438 * 3 2 1 5 5 C 1.38528 * 118.37918 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.22169 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.56115 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47653 * 124.99635 * 7 6 5 9 9 N 1.46504 * 109.47228 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99846 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99934 * 0.02562 * 10 9 8 12 12 C 1.47885 * 119.99925 * 180.02562 * 10 9 8 13 13 C 1.39915 * 120.02324 * 359.97438 * 12 10 9 14 14 C 1.38333 * 120.35308 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41341 * 359.97438 * 14 13 12 16 16 C 1.40741 * 120.04359 * 0.02562 * 15 14 13 17 17 C 1.41437 * 120.18186 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99802 * 335.21240 * 17 16 15 19 19 C 1.39934 * 120.00493 * 155.21608 * 17 16 15 20 20 N 1.30832 * 119.99780 * 342.27478 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 162.27314 * 19 17 16 22 22 H 1.48498 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47097 * 119.99920 * 21 19 17 24 24 H 1.48499 * 109.47533 * 240.00241 * 21 19 17 25 25 C 1.39000 * 120.02458 * 179.97438 * 12 10 9 26 26 N 1.31854 * 120.88736 * 0.25439 * 6 5 4 27 27 C 1.31845 * 121.77493 * 359.47835 * 26 6 5 28 28 H 1.09000 * 109.46778 * 60.00373 * 1 2 3 29 29 H 1.08995 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47327 * 300.00146 * 1 2 3 31 31 H 1.08006 * 120.80795 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.39580 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.47078 * 4.99663 * 7 6 5 34 34 H 1.09005 * 109.47384 * 245.00205 * 7 6 5 35 35 H 1.09007 * 109.46856 * 59.99892 * 8 7 6 36 36 H 1.08998 * 109.47123 * 300.00015 * 8 7 6 37 37 H 0.96996 * 120.00147 * 0.02562 * 9 8 7 38 38 H 1.07995 * 119.82513 * 0.04258 * 13 12 10 39 39 H 1.07999 * 119.79057 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.97568 * 180.02562 * 15 14 13 41 41 H 0.96997 * 120.00049 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.19789 * 0.25714 * 25 12 10 43 43 H 1.08000 * 119.65682 * 180.27430 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2954 0.0005 5 6 4.0182 2.5519 0.0011 6 6 3.2080 3.6721 0.0016 7 6 3.8344 5.0427 0.0027 8 6 3.2944 5.8514 -1.1785 9 7 3.9030 7.1840 -1.1769 10 6 3.5742 8.0761 -2.1322 11 8 2.7724 7.7751 -2.9947 12 6 4.1889 9.4211 -2.1310 13 6 5.1116 9.7682 -1.1380 14 6 5.6903 11.0246 -1.1301 15 6 5.3658 11.9481 -2.0993 16 6 4.4398 11.6170 -3.1061 17 6 4.1048 12.5628 -4.1030 18 1 4.2141 13.6187 -3.9041 19 6 3.6317 12.1305 -5.3470 20 7 3.8186 10.8915 -5.7233 21 14 2.7334 13.3223 -6.4702 22 1 2.6537 14.6536 -5.8171 23 1 3.4708 13.4445 -7.7534 24 1 1.3622 12.8167 -6.7335 25 6 3.8506 10.3414 -3.1162 26 7 1.8944 3.5575 0.0066 27 6 1.3002 2.3805 0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.0433 0.4030 0.0014 32 1 5.0932 2.6553 0.0011 33 1 4.9166 4.9476 -0.0865 34 1 3.5901 5.5531 0.9344 35 1 2.2122 5.9464 -1.0893 36 1 3.5387 5.3411 -2.1102 37 1 4.5426 7.4243 -0.4885 38 1 5.3735 9.0514 -0.3739 39 1 6.4011 11.2831 -0.3591 40 1 5.8223 12.9269 -2.0865 41 1 3.4911 10.5919 -6.5857 42 1 3.1357 10.0791 -3.8821 43 1 0.2216 2.3265 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:42 Heat of formation + Delta-G solvation = -26.088223 kcal Electronic energy + Delta-G solvation = -25428.768205 eV Core-core repulsion = 21631.688121 eV Total energy + Delta-G solvation = -3797.080085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99975 -39.18511 -38.59161 -37.00709 -35.02440 -33.71874 -32.74701 -32.29166 -30.23818 -29.41706 -28.65679 -27.63902 -25.34269 -24.47991 -23.41295 -22.18438 -21.52377 -20.85544 -19.49530 -18.53454 -17.72057 -17.40419 -16.32678 -16.22514 -16.12737 -15.34152 -15.19791 -15.00751 -14.64639 -14.50421 -14.47163 -14.05001 -13.63872 -13.37123 -13.18120 -13.12528 -12.66380 -12.46075 -12.38425 -12.19807 -12.10063 -11.69661 -11.59446 -11.35394 -11.12865 -11.04271 -10.70630 -10.46522 -10.03432 -9.99542 -9.69789 -9.65882 -9.19985 -8.98481 -8.65469 -8.58944 -7.60044 -7.49528 -6.77943 -4.39102 0.79226 0.96221 2.24909 2.76942 2.82947 3.09685 3.14668 3.16790 3.41510 3.70283 3.91324 3.94782 4.08328 4.30225 4.47918 4.56717 4.66902 4.71428 4.74622 5.00937 5.05601 5.09709 5.13596 5.22175 5.47781 5.62081 5.64042 5.72469 5.77160 6.05672 6.09153 6.15142 6.24106 6.29870 6.74320 6.80397 6.91348 7.01419 7.04704 7.23571 7.40769 7.69751 7.72849 7.78938 7.95323 8.13610 8.22483 8.53324 8.82713 8.86016 9.01168 10.16934 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.002089 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.754224 B =13401.648569 C =14444.335607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.069 3.931 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.101 3.899 7 C -0.077 4.077 8 C 0.130 3.870 9 N -0.738 5.738 10 C 0.563 3.437 11 O -0.546 6.546 12 C -0.127 4.127 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.271 1.271 25 C -0.092 4.092 26 N -0.441 5.441 27 C 0.025 3.975 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.284 0.716 42 H 0.133 0.867 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -18.873 11.513 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.021 3.979 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.038 4.038 7 C -0.115 4.115 8 C 0.006 3.994 9 N -0.393 5.393 10 C 0.354 3.646 11 O -0.423 6.423 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.407 5.407 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.112 4.112 26 N -0.151 5.151 27 C -0.134 4.134 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.234 0.766 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.097 -18.728 10.678 21.780 hybrid contribution 0.231 -0.251 -0.216 0.404 sum -2.866 -18.979 10.462 21.860 Atomic orbital electron populations 1.23135 0.77872 1.04388 1.01772 1.86068 1.21763 1.26088 1.88651 1.20090 0.93315 0.85779 0.98689 1.20922 0.91666 0.98877 1.01792 1.21881 1.01563 0.91552 0.99548 1.20965 0.89048 0.95455 0.98342 1.20672 0.99903 0.90732 1.00169 1.21105 0.98711 0.82578 0.97001 1.45936 1.47675 1.13807 1.31838 1.18829 0.80732 0.85022 0.80025 1.90699 1.34836 1.79463 1.37350 1.19483 1.01439 0.92841 0.99303 1.20340 1.04965 0.97416 1.01063 1.20433 0.99263 0.93956 0.97990 1.21095 1.02723 0.99297 1.00093 1.17610 0.89050 0.92175 0.91615 1.19612 1.38131 0.94641 0.96479 0.90048 1.25971 0.94035 0.95763 0.98881 1.69802 1.33684 1.16926 1.20333 0.86239 0.79729 0.81201 0.79466 1.18341 1.19946 1.19562 1.21633 0.99702 0.93145 0.96733 1.67355 1.11676 1.26493 1.09537 1.22916 1.00577 0.86993 1.02876 0.92225 0.87881 0.92328 0.83948 0.83803 0.89548 0.89286 0.90760 0.92090 0.76645 0.89190 0.88911 0.88636 0.90505 0.84904 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.73 10.51 -19.46 -0.20 -2.93 16 3 C 0.07 0.67 6.71 -39.07 -0.26 0.40 16 4 C -0.11 -0.94 10.13 -39.14 -0.40 -1.34 16 5 C -0.13 -1.12 9.70 -39.47 -0.38 -1.51 16 6 C 0.10 1.12 6.17 -82.58 -0.51 0.61 16 7 C -0.08 -0.81 5.72 -27.89 -0.16 -0.97 16 8 C 0.13 1.93 5.53 -4.04 -0.02 1.91 16 9 N -0.74 -12.43 5.51 -61.23 -0.34 -12.77 16 10 C 0.56 12.66 7.77 -12.31 -0.10 12.56 16 11 O -0.55 -14.20 16.33 5.32 0.09 -14.12 16 12 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 13 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 14 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 15 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 16 C 0.10 2.62 5.57 -106.88 -0.60 2.02 16 17 C -0.46 -12.19 9.05 -37.73 -0.34 -12.53 16 18 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.78 -21.02 10.97 55.55 0.61 -20.41 16 21 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 26 N -0.44 -5.51 9.88 -9.35 -0.09 -5.60 16 27 C 0.02 0.26 10.22 -17.37 -0.18 0.08 16 28 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.14 0.90 7.95 -52.49 -0.42 0.48 16 33 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 5.59 6.49 -40.82 -0.26 5.32 16 38 H 0.09 1.54 6.38 -52.49 -0.33 1.20 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 41 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 42 H 0.13 3.90 5.77 -52.48 -0.30 3.60 16 43 H 0.16 1.27 6.32 -52.49 -0.33 0.93 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -32.93 367.97 -8.90 -41.83 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.36 Total: 9.73 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -4.12 Total: -15.23 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.18 Total: -38.78 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.12 Total: -17.05 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.93 -8.90 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.744 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds