Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35910 * 116.99716 * 2 1 4 4 C 1.39142 * 120.47412 * 179.97438 * 3 2 1 5 5 C 1.38528 * 118.37918 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.22169 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.56115 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47653 * 124.99635 * 7 6 5 9 9 N 1.46504 * 109.47228 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99846 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99934 * 0.02562 * 10 9 8 12 12 C 1.47885 * 119.99925 * 180.02562 * 10 9 8 13 13 C 1.39915 * 120.02324 * 359.97438 * 12 10 9 14 14 C 1.38333 * 120.35308 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41341 * 359.97438 * 14 13 12 16 16 C 1.40741 * 120.04359 * 0.02562 * 15 14 13 17 17 C 1.41437 * 120.18186 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99802 * 335.21240 * 17 16 15 19 19 C 1.39934 * 120.00493 * 155.21608 * 17 16 15 20 20 N 1.30832 * 119.99780 * 342.27478 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 162.27314 * 19 17 16 22 22 H 1.48498 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47097 * 119.99920 * 21 19 17 24 24 H 1.48499 * 109.47533 * 240.00241 * 21 19 17 25 25 C 1.39000 * 120.02458 * 179.97438 * 12 10 9 26 26 N 1.31854 * 120.88736 * 0.25439 * 6 5 4 27 27 C 1.31845 * 121.77493 * 359.47835 * 26 6 5 28 28 H 1.09000 * 109.46778 * 60.00373 * 1 2 3 29 29 H 1.08995 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47327 * 300.00146 * 1 2 3 31 31 H 1.08006 * 120.80795 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.39580 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.47078 * 4.99663 * 7 6 5 34 34 H 1.09005 * 109.47384 * 245.00205 * 7 6 5 35 35 H 1.09007 * 109.46856 * 59.99892 * 8 7 6 36 36 H 1.08998 * 109.47123 * 300.00015 * 8 7 6 37 37 H 0.96996 * 120.00147 * 0.02562 * 9 8 7 38 38 H 1.07995 * 119.82513 * 0.04258 * 13 12 10 39 39 H 1.07999 * 119.79057 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.97568 * 180.02562 * 15 14 13 41 41 H 0.96997 * 120.00049 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.19789 * 0.25714 * 25 12 10 43 43 H 1.08000 * 119.65682 * 180.27430 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2954 0.0005 5 6 4.0182 2.5519 0.0011 6 6 3.2080 3.6721 0.0016 7 6 3.8344 5.0427 0.0027 8 6 3.2944 5.8514 -1.1785 9 7 3.9030 7.1840 -1.1769 10 6 3.5742 8.0761 -2.1322 11 8 2.7724 7.7751 -2.9947 12 6 4.1889 9.4211 -2.1310 13 6 5.1116 9.7682 -1.1380 14 6 5.6903 11.0246 -1.1301 15 6 5.3658 11.9481 -2.0993 16 6 4.4398 11.6170 -3.1061 17 6 4.1048 12.5628 -4.1030 18 1 4.2141 13.6187 -3.9041 19 6 3.6317 12.1305 -5.3470 20 7 3.8186 10.8915 -5.7233 21 14 2.7334 13.3223 -6.4702 22 1 2.6537 14.6536 -5.8171 23 1 3.4708 13.4445 -7.7534 24 1 1.3622 12.8167 -6.7335 25 6 3.8506 10.3414 -3.1162 26 7 1.8944 3.5575 0.0066 27 6 1.3002 2.3805 0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.0433 0.4030 0.0014 32 1 5.0932 2.6553 0.0011 33 1 4.9166 4.9476 -0.0865 34 1 3.5901 5.5531 0.9344 35 1 2.2122 5.9464 -1.0893 36 1 3.5387 5.3411 -2.1102 37 1 4.5426 7.4243 -0.4885 38 1 5.3735 9.0514 -0.3739 39 1 6.4011 11.2831 -0.3591 40 1 5.8223 12.9269 -2.0865 41 1 3.4911 10.5919 -6.5857 42 1 3.1357 10.0791 -3.8821 43 1 0.2216 2.3265 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = -47.756169 kcal Electronic energy + Delta-G solvation = -25429.707798 eV Core-core repulsion = 21631.688121 eV Total energy + Delta-G solvation = -3798.019677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70583 -40.86779 -39.32822 -38.79866 -36.42084 -35.57761 -33.48747 -33.42867 -31.92013 -31.26067 -29.59402 -28.27407 -27.19759 -25.60882 -24.29332 -23.53286 -22.81774 -22.43626 -21.19353 -19.52212 -19.14422 -18.15432 -17.90573 -17.37859 -16.87606 -16.75522 -16.51704 -16.46399 -16.35692 -15.45357 -15.33792 -15.14457 -14.96103 -14.89037 -14.53158 -14.31540 -14.23627 -13.94166 -13.47347 -13.09385 -13.02841 -12.92246 -12.78321 -12.77067 -12.56744 -12.46267 -12.21892 -12.16153 -11.89559 -11.48586 -11.07851 -10.82025 -10.71881 -10.43165 -10.14037 -9.45540 -9.37779 -9.36687 -8.66194 -6.37390 0.08110 0.24741 0.39330 1.01587 1.36055 1.46865 1.52480 2.11057 2.19033 2.19839 2.25090 2.72271 2.79578 3.35009 3.63707 3.71146 3.73811 3.88320 4.01843 4.16642 4.20645 4.33260 4.34498 4.38947 4.45976 4.56229 4.62442 4.63589 4.72755 4.87362 4.89820 4.97720 5.04350 5.10269 5.16452 5.21231 5.32435 5.44306 5.52030 5.53630 5.88412 5.94018 6.06731 6.18943 6.30136 6.53160 6.71406 6.88766 6.95611 6.96056 7.33196 8.30910 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.002089 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.754224 B =13401.648569 C =14444.335607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.077 3.923 7 C -0.063 4.063 8 C 0.133 3.867 9 N -0.710 5.710 10 C 0.558 3.442 11 O -0.594 6.594 12 C -0.139 4.139 13 C -0.194 4.194 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.065 3.935 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.027 3.973 20 N -0.827 5.827 21 Si 0.983 3.017 22 H -0.250 1.250 23 H -0.263 1.263 24 H -0.272 1.272 25 C -0.133 4.133 26 N -0.476 5.476 27 C 0.008 3.992 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.416 0.584 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.095 0.905 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -19.886 13.974 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.018 3.982 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.061 4.061 7 C -0.101 4.101 8 C 0.009 3.991 9 N -0.364 5.364 10 C 0.348 3.652 11 O -0.475 6.475 12 C -0.142 4.142 13 C -0.214 4.214 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.452 5.452 21 Si 0.803 3.197 22 H -0.173 1.173 23 H -0.188 1.188 24 H -0.197 1.197 25 C -0.153 4.153 26 N -0.186 5.186 27 C -0.150 4.150 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.182 0.818 32 H 0.193 0.807 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.275 -19.760 13.205 23.801 hybrid contribution -0.285 -0.110 -0.780 0.838 sum -1.560 -19.870 12.425 23.487 Atomic orbital electron populations 1.23402 0.76214 1.06035 1.02320 1.86059 1.23557 1.25633 1.88417 1.20255 0.93939 0.85888 0.98104 1.21297 0.91640 0.99848 1.01119 1.22180 1.02914 0.90710 0.97867 1.21151 0.89025 0.96282 0.99673 1.20626 1.01465 0.89854 0.98156 1.21153 0.97539 0.81670 0.98708 1.45683 1.46809 1.13584 1.30281 1.18797 0.80362 0.85441 0.80590 1.90675 1.37038 1.80243 1.39593 1.19777 1.02038 0.93079 0.99340 1.20896 1.01994 0.98297 1.00184 1.20950 0.99252 0.93157 0.97964 1.21426 1.01758 1.00625 0.99766 1.17959 0.90333 0.92398 0.93020 1.19881 1.40423 0.94855 0.97486 0.89762 1.26875 0.94250 0.97383 1.00234 1.69905 1.35363 1.19005 1.20972 0.85151 0.78041 0.78954 0.77546 1.17325 1.18815 1.19704 1.21434 1.01053 0.94838 0.97994 1.67304 1.12881 1.27718 1.10709 1.23136 1.01404 0.86964 1.03495 0.92002 0.85728 0.91485 0.81762 0.80687 0.86335 0.88223 0.93135 0.93498 0.74508 0.84052 0.84068 0.87290 0.90400 0.88650 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.32 -5.24 10.51 -92.54 -0.97 -6.21 16 3 C 0.07 1.20 6.71 22.60 0.15 1.36 16 4 C -0.11 -1.76 10.13 22.56 0.23 -1.53 16 5 C -0.12 -1.78 9.70 22.34 0.22 -1.56 16 6 C 0.08 1.59 6.17 42.56 0.26 1.85 16 7 C -0.06 -1.16 5.72 29.85 0.17 -0.99 16 8 C 0.13 3.85 5.53 86.38 0.48 4.33 16 9 N -0.71 -22.71 5.51 -465.92 -2.57 -25.28 16 10 C 0.56 25.35 7.77 86.80 0.67 26.02 16 11 O -0.59 -32.51 16.33 -3.86 -0.06 -32.57 16 12 C -0.14 -6.67 5.87 -20.13 -0.12 -6.79 16 13 C -0.19 -7.50 9.55 22.70 0.22 -7.29 16 14 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 15 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 16 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 17 C -0.50 -27.50 9.05 23.47 0.21 -27.29 16 18 H 0.08 4.39 7.91 -2.91 -0.02 4.37 16 19 C 0.03 1.45 5.14 85.25 0.44 1.89 16 20 N -0.83 -47.21 10.97 21.82 0.24 -46.97 16 21 Si 0.98 40.50 29.59 68.60 2.03 42.53 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.13 -7.52 8.23 23.01 0.19 -7.33 16 26 N -0.48 -11.74 9.88 -183.49 -1.81 -13.56 16 27 C 0.01 0.17 10.22 84.80 0.87 1.03 16 28 H 0.06 0.53 7.68 -2.39 -0.02 0.51 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.49 7.68 -2.39 -0.02 0.47 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.18 1.43 7.95 -2.91 -0.02 1.41 16 33 H 0.12 1.42 7.87 -2.38 -0.02 1.40 16 34 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.05 1.72 7.95 -2.38 -0.02 1.71 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.42 10.03 6.49 -92.71 -0.60 9.43 16 38 H 0.14 3.96 6.38 -2.91 -0.02 3.94 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 42 H 0.10 6.07 5.77 -2.91 -0.02 6.05 16 43 H 0.17 2.74 6.32 -2.91 -0.02 2.72 16 Total: -1.00 -78.33 367.97 2.73 -75.60 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.45 Total: 31.41 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 5.43 Total: -24.96 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -4.14 Total: -85.80 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.04 Total: -38.79 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -78.33 2.73 -75.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.846 kcal (2) G-P(sol) polarization free energy of solvation -78.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds