Wall clock time and date at job start Tue Mar 31 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 116.99487 * 2 1 4 4 C 1.38751 * 120.47766 * 359.97438 * 3 2 1 5 5 N 1.31808 * 120.68402 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.78261 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.88520 * 359.97438 * 6 5 4 8 8 C 1.38571 * 119.22448 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.81324 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47023 * 264.99491 * 9 8 7 11 11 N 1.46497 * 109.47031 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99812 * 180.02562 * 11 10 9 13 13 O 1.21548 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.47885 * 120.00156 * 179.97438 * 12 11 10 15 15 C 1.39921 * 120.01989 * 359.72579 * 14 12 11 16 16 C 1.38332 * 120.35376 * 179.74016 * 15 14 12 17 17 C 1.37759 * 120.41169 * 0.56147 * 16 15 14 18 18 C 1.40747 * 120.03930 * 359.69284 * 17 16 15 19 19 C 1.41437 * 120.17774 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00004 * 24.44383 * 19 18 17 21 21 C 1.39933 * 120.00041 * 204.43798 * 19 18 17 22 22 N 1.30828 * 120.00116 * 17.88207 * 21 19 18 23 23 Si 1.86794 * 120.00219 * 197.88049 * 21 19 18 24 24 H 1.48505 * 109.47117 * 59.99989 * 23 21 19 25 25 H 1.48495 * 109.47531 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47301 * 300.00174 * 23 21 19 27 27 C 1.38993 * 120.02483 * 180.02562 * 14 12 11 28 28 H 1.08997 * 109.47268 * 299.99417 * 1 2 3 29 29 H 1.08996 * 109.47586 * 59.99915 * 1 2 3 30 30 H 1.09006 * 109.46339 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.65507 * 0.03594 * 4 3 2 32 32 H 1.07997 * 119.55706 * 180.28178 * 6 5 4 33 33 H 1.07999 * 120.38712 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47389 * 24.99337 * 9 8 7 35 35 H 1.08996 * 109.47336 * 144.99795 * 9 8 7 36 36 H 1.09004 * 109.46912 * 300.00138 * 10 9 8 37 37 H 1.08996 * 109.46817 * 59.99985 * 10 9 8 38 38 H 0.96994 * 120.00424 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.82473 * 359.97438 * 15 14 12 40 40 H 1.08000 * 119.79301 * 180.27380 * 16 15 14 41 41 H 1.07994 * 119.97701 * 179.72053 * 17 16 15 42 42 H 0.97001 * 120.00607 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.20183 * 359.95388 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2998 2.3809 -0.0005 5 7 1.8939 3.5575 -0.0010 6 6 3.2076 3.6723 -0.0006 7 6 4.0177 2.5525 0.0010 8 6 3.4343 1.2955 0.0016 9 6 4.2834 0.0504 0.0039 10 6 4.4685 -0.4433 -1.4324 11 7 5.2943 -1.6533 -1.4302 12 6 5.5918 -2.2682 -2.5921 13 8 5.1744 -1.8191 -3.6416 14 6 6.4259 -3.4894 -2.5900 15 6 6.9114 -4.0035 -1.3826 16 6 7.6878 -5.1483 -1.3722 17 6 8.0016 -5.7889 -2.5507 18 6 7.5267 -5.2835 -3.7755 19 6 7.8467 -5.9391 -4.9872 20 1 8.0949 -6.9902 -4.9832 21 6 7.8416 -5.2259 -6.1911 22 7 7.8908 -3.9186 -6.1772 23 14 7.7644 -6.1403 -7.8181 24 1 6.5190 -6.9473 -7.8738 25 1 7.7721 -5.1631 -8.9361 26 1 8.9415 -7.0378 -7.9378 27 6 6.7334 -4.1236 -3.7880 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 0.2212 2.3268 -0.0004 32 1 3.6566 4.6545 0.0036 33 1 5.0927 2.6558 0.0010 34 1 5.2571 0.2754 0.4391 35 1 3.7919 -0.7234 0.5935 36 1 3.4947 -0.6683 -1.8676 37 1 4.9599 0.3306 -2.0221 38 1 5.6277 -2.0115 -0.5928 39 1 6.6755 -3.5060 -0.4535 40 1 8.0540 -5.5398 -0.4346 41 1 8.6120 -6.6796 -2.5348 42 1 7.8877 -3.4242 -7.0118 43 1 6.3643 -3.7279 -4.7226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188689108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:55 Heat of formation + Delta-G solvation = -26.933831 kcal Electronic energy + Delta-G solvation = -25954.211916 eV Core-core repulsion = 22157.095163 eV Total energy + Delta-G solvation = -3797.116753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03083 -39.16969 -38.35005 -37.07141 -35.56487 -33.79004 -33.22951 -30.80889 -30.41128 -29.44923 -28.85725 -27.82767 -25.38125 -24.42927 -23.18142 -22.28048 -21.62055 -20.88619 -19.53723 -18.28823 -17.73120 -17.37746 -16.54048 -16.33681 -16.03356 -15.41293 -15.05822 -15.03918 -14.70399 -14.63584 -14.42260 -13.95410 -13.67072 -13.45450 -13.25281 -12.83547 -12.58955 -12.49364 -12.44527 -12.23253 -12.13465 -11.76816 -11.65611 -11.31184 -11.13531 -11.05743 -10.74382 -10.50175 -10.03150 -9.77325 -9.74591 -9.69028 -9.20754 -9.01673 -8.70899 -8.65357 -7.62780 -7.52028 -6.79983 -4.41356 0.82098 0.96108 2.21949 2.82382 2.86369 3.07561 3.09247 3.16848 3.44751 3.68208 3.87863 3.92392 4.17296 4.31791 4.48403 4.60216 4.64344 4.80244 4.84034 4.93360 5.01653 5.11578 5.17450 5.26335 5.49503 5.58892 5.62242 5.70475 5.76038 6.03729 6.07320 6.12367 6.24472 6.27598 6.72102 6.84828 6.89242 6.98826 7.02181 7.21455 7.38311 7.65978 7.70319 7.76039 7.92925 8.09868 8.19520 8.50594 8.80203 8.83665 8.96437 10.14662 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002364 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.356016 B =11843.508046 C =12246.004605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.083 3.917 4 C 0.017 3.983 5 N -0.454 5.454 6 C 0.061 3.939 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.086 4.086 10 C 0.131 3.869 11 N -0.737 5.737 12 C 0.564 3.436 13 O -0.546 6.546 14 C -0.127 4.127 15 C -0.218 4.218 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.098 3.902 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.911 3.089 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.265 1.265 27 C -0.093 4.093 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.251 10.449 12.851 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.035 3.965 4 C -0.141 4.141 5 N -0.164 5.164 6 C -0.097 4.097 7 C -0.147 4.147 8 C -0.075 4.075 9 C -0.123 4.123 10 C 0.007 3.993 11 N -0.391 5.391 12 C 0.354 3.646 13 O -0.424 6.424 14 C -0.131 4.131 15 C -0.238 4.238 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.096 3.904 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.407 5.407 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.113 4.113 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.984 11.539 11.916 19.894 hybrid contribution 0.439 -1.030 -0.273 1.152 sum -10.545 10.509 11.642 18.899 Atomic orbital electron populations 1.23149 0.77928 1.04629 1.01446 1.86138 1.21621 1.25659 1.88142 1.19954 0.92657 0.86015 0.97884 1.22889 1.00502 0.87147 1.03599 1.67504 1.12392 1.26503 1.09992 1.22644 0.88834 0.99035 0.99138 1.22023 1.01876 0.91610 0.99189 1.19571 0.90673 0.96019 1.01274 1.20665 0.99348 0.94466 0.97838 1.21101 0.95816 0.87452 0.94951 1.45912 1.54757 1.28560 1.09880 1.18848 0.79279 0.83829 0.82610 1.90698 1.53816 1.66444 1.31444 1.19469 1.02319 0.95894 0.95388 1.20334 1.08208 1.00533 0.94772 1.20436 0.98730 0.95789 0.96652 1.21094 1.06248 1.03106 0.92792 1.17601 0.89021 0.91253 0.92540 1.19557 1.41315 0.97290 0.90726 0.90099 1.25968 0.92260 0.94769 1.01620 1.69781 1.33284 1.07369 1.30274 0.86323 0.80013 0.80042 0.80132 1.18716 1.20222 1.18961 1.21643 0.97070 0.96364 0.96198 0.92470 0.92309 0.87698 0.82553 0.82416 0.83827 0.89797 0.89428 0.91597 0.91842 0.76561 0.89231 0.88907 0.88630 0.90366 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.15 16 2 O -0.30 -3.18 9.77 -19.46 -0.19 -3.37 16 3 C 0.08 0.89 6.68 -39.07 -0.26 0.63 16 4 C 0.02 0.17 10.22 -17.37 -0.18 -0.01 16 5 N -0.45 -5.07 10.35 -13.13 -0.14 -5.20 16 6 C 0.06 0.58 11.18 -17.54 -0.20 0.38 16 7 C -0.13 -1.17 9.79 -39.47 -0.39 -1.56 16 8 C -0.07 -0.70 5.18 -104.18 -0.54 -1.24 16 9 C -0.09 -0.90 5.25 -27.88 -0.15 -1.05 16 10 C 0.13 1.88 5.66 -4.04 -0.02 1.86 16 11 N -0.74 -12.22 5.51 -61.24 -0.34 -12.56 16 12 C 0.56 12.49 7.77 -12.31 -0.10 12.39 16 13 O -0.55 -13.98 16.33 5.32 0.09 -13.89 16 14 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 15 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 16 C -0.10 -2.08 10.01 -39.72 -0.40 -2.47 16 17 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 18 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 19 C -0.46 -12.10 9.05 -37.73 -0.34 -12.45 16 20 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.77 16 22 N -0.78 -20.84 10.95 55.55 0.61 -20.23 16 23 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.09 -2.49 8.24 -38.44 -0.32 -2.80 16 28 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 29 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.16 1.20 6.32 -52.49 -0.33 0.87 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.09 0.91 7.78 -51.93 -0.40 0.50 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 5.60 6.49 -40.82 -0.26 5.33 16 39 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 42 H 0.29 7.00 8.30 -40.82 -0.34 6.66 16 43 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -32.41 367.59 -8.76 -41.17 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.36 Total: 10.14 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.94 Total: -15.39 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.14 Total: -38.00 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.10 Total: -17.27 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.41 -8.76 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.236 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds