Wall clock time and date at job start Tue Mar 31 2020 14:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 116.99487 * 2 1 4 4 C 1.38751 * 120.47766 * 359.97438 * 3 2 1 5 5 N 1.31808 * 120.68402 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.78261 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.88520 * 359.97438 * 6 5 4 8 8 C 1.38571 * 119.22448 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.81324 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47023 * 264.99491 * 9 8 7 11 11 N 1.46497 * 109.47031 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99812 * 180.02562 * 11 10 9 13 13 O 1.21548 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.47885 * 120.00156 * 179.97438 * 12 11 10 15 15 C 1.39921 * 120.01989 * 359.72579 * 14 12 11 16 16 C 1.38332 * 120.35376 * 179.74016 * 15 14 12 17 17 C 1.37759 * 120.41169 * 0.56147 * 16 15 14 18 18 C 1.40747 * 120.03930 * 359.69284 * 17 16 15 19 19 C 1.41437 * 120.17774 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00004 * 24.44383 * 19 18 17 21 21 C 1.39933 * 120.00041 * 204.43798 * 19 18 17 22 22 N 1.30828 * 120.00116 * 17.88207 * 21 19 18 23 23 Si 1.86794 * 120.00219 * 197.88049 * 21 19 18 24 24 H 1.48505 * 109.47117 * 59.99989 * 23 21 19 25 25 H 1.48495 * 109.47531 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47301 * 300.00174 * 23 21 19 27 27 C 1.38993 * 120.02483 * 180.02562 * 14 12 11 28 28 H 1.08997 * 109.47268 * 299.99417 * 1 2 3 29 29 H 1.08996 * 109.47586 * 59.99915 * 1 2 3 30 30 H 1.09006 * 109.46339 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.65507 * 0.03594 * 4 3 2 32 32 H 1.07997 * 119.55706 * 180.28178 * 6 5 4 33 33 H 1.07999 * 120.38712 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47389 * 24.99337 * 9 8 7 35 35 H 1.08996 * 109.47336 * 144.99795 * 9 8 7 36 36 H 1.09004 * 109.46912 * 300.00138 * 10 9 8 37 37 H 1.08996 * 109.46817 * 59.99985 * 10 9 8 38 38 H 0.96994 * 120.00424 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.82473 * 359.97438 * 15 14 12 40 40 H 1.08000 * 119.79301 * 180.27380 * 16 15 14 41 41 H 1.07994 * 119.97701 * 179.72053 * 17 16 15 42 42 H 0.97001 * 120.00607 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.20183 * 359.95388 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2998 2.3809 -0.0005 5 7 1.8939 3.5575 -0.0010 6 6 3.2076 3.6723 -0.0006 7 6 4.0177 2.5525 0.0010 8 6 3.4343 1.2955 0.0016 9 6 4.2834 0.0504 0.0039 10 6 4.4685 -0.4433 -1.4324 11 7 5.2943 -1.6533 -1.4302 12 6 5.5918 -2.2682 -2.5921 13 8 5.1744 -1.8191 -3.6416 14 6 6.4259 -3.4894 -2.5900 15 6 6.9114 -4.0035 -1.3826 16 6 7.6878 -5.1483 -1.3722 17 6 8.0016 -5.7889 -2.5507 18 6 7.5267 -5.2835 -3.7755 19 6 7.8467 -5.9391 -4.9872 20 1 8.0949 -6.9902 -4.9832 21 6 7.8416 -5.2259 -6.1911 22 7 7.8908 -3.9186 -6.1772 23 14 7.7644 -6.1403 -7.8181 24 1 6.5190 -6.9473 -7.8738 25 1 7.7721 -5.1631 -8.9361 26 1 8.9415 -7.0378 -7.9378 27 6 6.7334 -4.1236 -3.7880 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 0.2212 2.3268 -0.0004 32 1 3.6566 4.6545 0.0036 33 1 5.0927 2.6558 0.0010 34 1 5.2571 0.2754 0.4391 35 1 3.7919 -0.7234 0.5935 36 1 3.4947 -0.6683 -1.8676 37 1 4.9599 0.3306 -2.0221 38 1 5.6277 -2.0115 -0.5928 39 1 6.6755 -3.5060 -0.4535 40 1 8.0540 -5.5398 -0.4346 41 1 8.6120 -6.6796 -2.5348 42 1 7.8877 -3.4242 -7.0118 43 1 6.3643 -3.7279 -4.7226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188689108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:54 Heat of formation + Delta-G solvation = -47.771511 kcal Electronic energy + Delta-G solvation = -25955.115506 eV Core-core repulsion = 22157.095163 eV Total energy + Delta-G solvation = -3798.020343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76628 -40.86726 -39.05033 -38.84828 -36.81417 -35.61351 -34.44981 -32.17510 -31.45233 -31.27257 -30.02052 -28.40857 -27.22508 -25.65492 -23.87422 -23.73691 -22.85398 -22.51842 -21.20629 -19.54158 -18.94831 -18.14172 -17.95865 -17.48912 -16.91903 -16.85655 -16.63091 -16.39071 -16.36232 -15.41720 -15.35095 -15.13720 -15.03171 -14.79415 -14.61299 -14.38541 -14.25639 -13.64744 -13.49419 -13.27723 -13.17528 -12.93406 -12.80375 -12.76194 -12.52842 -12.39254 -12.22044 -12.18742 -11.90781 -11.50839 -11.06452 -10.86525 -10.48798 -10.46954 -10.17861 -9.46738 -9.44290 -9.37743 -8.66471 -6.37837 0.09515 0.20596 0.38321 1.01943 1.35883 1.47695 1.50503 2.09742 2.19010 2.20739 2.24569 2.76189 2.78974 3.50151 3.57959 3.70460 3.76756 3.89224 3.92175 4.11483 4.13170 4.31692 4.35089 4.35677 4.44670 4.57662 4.61035 4.61269 4.73077 4.74078 4.88903 4.93759 5.03392 5.09288 5.20343 5.24489 5.31740 5.42825 5.52678 5.56260 5.87282 5.93251 6.06046 6.20950 6.29397 6.51360 6.69154 6.88066 6.93651 6.95301 7.30502 8.30075 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002364 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.356016 B =11843.508046 C =12246.004605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.072 3.928 4 C 0.008 3.992 5 N -0.477 5.477 6 C 0.052 3.948 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.070 4.070 10 C 0.133 3.867 11 N -0.710 5.710 12 C 0.559 3.441 13 O -0.592 6.592 14 C -0.139 4.139 15 C -0.196 4.196 16 C -0.096 4.096 17 C -0.217 4.217 18 C 0.066 3.934 19 C -0.498 4.498 20 H 0.085 0.915 21 C 0.029 3.971 22 N -0.825 5.825 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.251 1.251 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 10.550 15.553 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.024 3.976 4 C -0.150 4.150 5 N -0.187 5.187 6 C -0.105 4.105 7 C -0.143 4.143 8 C -0.095 4.095 9 C -0.108 4.108 10 C 0.010 3.990 11 N -0.363 5.363 12 C 0.349 3.651 13 O -0.474 6.474 14 C -0.142 4.142 15 C -0.215 4.215 16 C -0.113 4.113 17 C -0.237 4.237 18 C 0.063 3.937 19 C -0.527 4.527 20 H 0.103 0.897 21 C -0.186 4.186 22 N -0.451 5.451 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.153 4.153 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.192 0.808 32 H 0.200 0.800 33 H 0.186 0.814 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.779 11.638 14.693 21.622 hybrid contribution 0.311 -0.991 -0.878 1.361 sum -10.468 10.647 13.815 20.342 Atomic orbital electron populations 1.23398 0.76248 1.05795 1.02521 1.86102 1.23520 1.25773 1.88180 1.20129 0.93064 0.86335 0.98029 1.23179 1.01475 0.86859 1.03470 1.67537 1.13426 1.27018 1.10702 1.23119 0.88498 1.00381 0.98462 1.22314 1.03138 0.90931 0.97922 1.19742 0.90828 0.96536 1.02346 1.20542 1.00815 0.94570 0.94824 1.21184 0.94099 0.86016 0.97742 1.45671 1.53509 1.28407 1.08761 1.18780 0.79123 0.83738 0.83437 1.90674 1.55631 1.67567 1.33488 1.19766 1.02437 0.96367 0.95617 1.20875 1.05522 0.99788 0.95353 1.20944 0.97634 0.95203 0.97562 1.21418 1.05843 1.03532 0.92870 1.17954 0.89823 0.91832 0.94046 1.19842 1.43352 0.97670 0.91855 0.89739 1.26862 0.91286 0.95359 1.05112 1.69887 1.35140 1.09029 1.31044 0.85248 0.80294 0.78738 0.75457 1.18531 1.19723 1.17517 1.21450 0.99500 0.98116 0.96266 0.90783 0.91845 0.86560 0.80842 0.80013 0.81412 0.87272 0.88926 0.93525 0.92677 0.74618 0.84266 0.84187 0.87326 0.90335 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.82 113.37 1.11 1.29 16 2 O -0.32 -6.47 9.77 -92.55 -0.90 -7.38 16 3 C 0.07 1.48 6.68 22.60 0.15 1.64 16 4 C 0.01 0.15 10.22 84.82 0.87 1.02 16 5 N -0.48 -10.07 10.35 -195.44 -2.02 -12.09 16 6 C 0.05 0.90 11.18 84.68 0.95 1.84 16 7 C -0.12 -2.00 9.79 22.34 0.22 -1.78 16 8 C -0.09 -1.66 5.18 -19.58 -0.10 -1.76 16 9 C -0.07 -1.29 5.25 29.85 0.16 -1.14 16 10 C 0.13 3.67 5.66 86.38 0.49 4.16 16 11 N -0.71 -22.25 5.51 -465.93 -2.57 -24.82 16 12 C 0.56 24.88 7.77 86.80 0.67 25.56 16 13 O -0.59 -31.61 16.33 -3.87 -0.06 -31.67 16 14 C -0.14 -6.57 5.87 -20.13 -0.12 -6.69 16 15 C -0.20 -7.53 9.55 22.70 0.22 -7.32 16 16 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 17 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 18 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 19 C -0.50 -27.29 9.05 23.47 0.21 -27.07 16 20 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 21 C 0.03 1.52 5.14 85.25 0.44 1.95 16 22 N -0.83 -46.60 10.95 21.82 0.24 -46.36 16 23 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 27 C -0.13 -7.44 8.24 23.01 0.19 -7.25 16 28 H 0.07 0.62 7.68 -2.39 -0.02 0.60 16 29 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16 30 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.17 2.48 6.32 -2.91 -0.02 2.46 16 32 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.09 1.65 7.78 -2.39 -0.02 1.63 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 10.05 6.49 -92.71 -0.60 9.45 16 39 H 0.14 3.93 6.38 -2.91 -0.02 3.91 16 40 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 43 H 0.10 6.11 5.74 -2.91 -0.02 6.09 16 Total: -1.00 -75.84 367.59 2.94 -72.90 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.45 Total: 32.85 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 5.78 Total: -25.45 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -4.35 Total: -83.27 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.97 Total: -39.04 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -75.84 2.94 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.125 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds