Wall clock time and date at job start Tue Mar 31 2020 14:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99927 * 2 1 4 4 C 1.50706 * 109.47031 * 89.99713 * 3 2 1 5 5 C 1.38285 * 119.97342 * 269.97699 * 4 3 2 6 6 C 1.38244 * 120.11111 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.05397 * 359.67744 * 6 5 4 8 8 C 1.38706 * 119.94561 * 0.61643 * 7 6 5 9 9 O 1.35904 * 120.06095 * 179.67577 * 8 7 6 10 10 C 1.38127 * 119.96818 * 90.00082 * 4 3 2 11 11 C 1.34776 * 119.99591 * 179.97438 * 2 1 3 12 12 O 1.21588 * 119.99707 * 180.02562 * 11 2 1 13 13 N 1.34778 * 120.00207 * 0.02562 * 11 2 1 14 14 C 1.39953 * 119.99757 * 174.86021 * 13 11 2 15 15 C 1.39288 * 119.94620 * 145.75715 * 14 13 11 16 16 C 1.38489 * 120.43054 * 180.02562 * 15 14 13 17 17 C 1.37680 * 120.32052 * 359.97225 * 16 15 14 18 18 C 1.40742 * 119.88405 * 0.02562 * 17 16 15 19 19 C 1.41413 * 120.21019 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99641 * 205.17692 * 19 18 17 21 21 C 1.39929 * 119.99860 * 25.17554 * 19 18 17 22 22 N 1.30829 * 120.00303 * 16.79145 * 21 19 18 23 23 Si 1.86798 * 119.99937 * 196.78611 * 21 19 18 24 24 H 1.48496 * 109.47463 * 94.96711 * 23 21 19 25 25 H 1.48501 * 109.47300 * 214.96852 * 23 21 19 26 26 H 1.48508 * 109.47138 * 334.96515 * 23 21 19 27 27 C 1.38231 * 119.94887 * 325.48793 * 14 13 11 28 28 H 1.09003 * 109.47104 * 89.99693 * 1 2 3 29 29 H 1.08995 * 109.47571 * 209.99955 * 1 2 3 30 30 H 1.09004 * 109.47316 * 330.00204 * 1 2 3 31 31 H 1.08999 * 109.47086 * 329.99592 * 3 2 1 32 32 H 1.09004 * 109.46935 * 209.99483 * 3 2 1 33 33 H 1.08000 * 119.94066 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.97183 * 179.97438 * 6 5 4 35 35 H 1.08010 * 120.02838 * 180.29864 * 7 6 5 36 36 H 0.96701 * 114.00342 * 269.73201 * 9 8 7 37 37 H 1.07993 * 120.02961 * 0.02562 * 10 4 3 38 38 H 0.96995 * 120.00010 * 354.85579 * 13 11 2 39 39 H 1.08000 * 119.78249 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.83698 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.05963 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00517 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.15890 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 1.5265 2.5026 2.0720 6 6 1.7542 2.9038 3.3752 7 6 2.9010 2.5018 4.0326 8 6 3.8304 1.7057 3.3796 9 8 4.9624 1.3144 4.0218 10 6 3.5998 1.3047 2.0714 11 6 2.1388 -1.1672 0.0005 12 8 3.3547 -1.1673 0.0010 13 7 1.4649 -2.3344 0.0005 14 6 2.1605 -3.5440 -0.1075 15 6 1.6962 -4.6751 0.5597 16 6 2.3769 -5.8770 0.4602 17 6 3.5209 -5.9670 -0.3006 18 6 4.0019 -4.8325 -0.9805 19 6 5.1765 -4.9170 -1.7634 20 1 5.7692 -4.0326 -1.9449 21 6 5.5708 -6.1464 -2.3028 22 7 4.7162 -7.1345 -2.3724 23 14 7.3175 -6.3769 -2.9236 24 1 8.1481 -6.9820 -1.8517 25 1 7.3078 -7.2730 -4.1077 26 1 7.8852 -5.0587 -3.3052 27 6 3.3041 -3.6158 -0.8807 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6270 2.8135 1.5615 34 1 1.0328 3.5279 3.8815 35 1 3.0762 2.8115 5.0524 36 1 5.7064 1.9224 3.9133 37 1 4.3200 0.6816 1.5622 38 1 0.4978 -2.3361 0.0755 39 1 0.7999 -4.6142 1.1592 40 1 2.0081 -6.7482 0.9813 41 1 4.0486 -6.9063 -0.3749 42 1 4.9893 -7.9867 -2.7467 43 1 3.6622 -2.7405 -1.4022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205387991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:58 Heat of formation + Delta-G solvation = -12.531210 kcal Electronic energy + Delta-G solvation = -26738.509363 eV Core-core repulsion = 22942.017155 eV Total energy + Delta-G solvation = -3796.492209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36407 -39.56952 -37.55596 -36.83088 -35.25144 -34.44650 -33.04835 -31.65901 -29.91836 -29.74904 -28.12563 -27.40497 -25.56117 -25.16070 -22.65389 -22.07678 -21.08915 -20.74975 -19.31160 -18.31835 -17.89001 -17.30877 -16.53526 -16.01637 -15.75078 -15.65162 -15.31985 -14.95291 -14.58582 -14.39421 -13.97840 -13.85021 -13.42269 -13.08134 -12.91107 -12.80917 -12.69050 -12.38166 -12.21326 -12.06783 -11.86347 -11.57319 -11.45587 -11.13583 -11.08391 -10.84926 -10.61926 -10.40446 -10.10772 -9.65322 -9.44195 -9.11604 -8.99771 -8.89694 -8.74363 -8.57214 -7.37531 -6.82257 -6.64177 -4.27076 1.06791 1.22018 2.76843 2.87597 3.02517 3.13433 3.18818 3.27036 3.58778 3.73214 4.01413 4.11038 4.27988 4.66459 4.71382 4.72940 4.94117 5.01725 5.07572 5.17275 5.33206 5.46158 5.52419 5.62933 5.76873 5.80457 5.89733 6.22589 6.29155 6.35744 6.38502 6.46414 6.50731 6.71571 6.84258 6.86708 7.11090 7.15834 7.30078 7.36962 7.58562 7.73672 7.86571 8.06107 8.17724 8.30953 8.44980 8.73137 8.95969 9.03978 9.09838 10.28116 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003036 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.445463 B = 9221.569638 C = 9988.238084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.173 3.827 4 C -0.090 4.090 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.146 4.146 8 C 0.101 3.899 9 O -0.497 6.497 10 C -0.115 4.115 11 C 0.701 3.299 12 O -0.561 6.561 13 N -0.680 5.680 14 C 0.168 3.832 15 C -0.263 4.263 16 C -0.092 4.092 17 C -0.173 4.173 18 C 0.121 3.879 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.208 4.208 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.388 0.612 37 H 0.139 0.861 38 H 0.393 0.607 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.279 0.721 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 18.158 6.613 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.050 3.950 4 C -0.091 4.091 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.165 4.165 8 C 0.057 3.943 9 O -0.307 6.307 10 C -0.134 4.134 11 C 0.403 3.597 12 O -0.436 6.436 13 N -0.328 5.328 14 C 0.076 3.924 15 C -0.285 4.285 16 C -0.111 4.111 17 C -0.193 4.193 18 C 0.118 3.882 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.141 4.141 22 N -0.423 5.423 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.244 0.756 37 H 0.157 0.843 38 H 0.228 0.772 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.361 17.454 6.645 20.075 hybrid contribution 0.338 0.167 -0.210 0.432 sum -7.024 17.621 6.435 20.031 Atomic orbital electron populations 1.21704 0.80225 1.02773 1.01619 1.47058 1.06019 1.04616 1.79498 1.20177 0.98691 0.84094 0.92032 1.20235 0.94183 0.97270 0.97444 1.21041 0.98836 0.98790 0.95027 1.20951 0.97057 1.00182 0.94781 1.21419 0.95667 0.98891 1.00487 1.18539 0.88785 0.96261 0.90732 1.84869 1.21009 1.51293 1.73551 1.21625 0.98827 0.99163 0.93754 1.15892 0.85533 0.80170 0.78068 1.90950 1.11129 1.85517 1.55999 1.42740 1.09423 1.04142 1.76477 1.17240 0.94749 0.82682 0.97699 1.20002 1.04762 0.93749 1.09939 1.20437 0.96276 0.95196 0.99172 1.21332 0.97939 1.00042 1.00007 1.17486 0.91247 0.90215 0.89289 1.19590 1.07046 0.94736 1.27441 0.90396 1.25889 0.98703 0.95370 0.94166 1.69833 1.34604 1.03606 1.34212 0.86307 0.82618 0.79217 0.78612 1.19382 1.20388 1.18576 1.20984 0.97735 0.99109 1.05162 0.92518 0.91626 0.91084 0.89661 0.88622 0.86027 0.85792 0.85712 0.75592 0.84288 0.77153 0.89492 0.89106 0.86363 0.91049 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.25 59.85 0.61 1.36 16 2 N -0.63 -8.62 2.86 -188.74 -0.54 -9.16 16 3 C 0.17 2.04 5.53 -5.19 -0.03 2.01 16 4 C -0.09 -1.08 5.46 -104.64 -0.57 -1.65 16 5 C -0.12 -1.15 9.70 -39.56 -0.38 -1.53 16 6 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16 7 C -0.15 -1.57 9.99 -39.44 -0.39 -1.97 16 8 C 0.10 1.31 6.70 -39.22 -0.26 1.05 16 9 O -0.50 -6.23 13.50 -19.44 -0.26 -6.50 16 10 C -0.11 -1.63 9.64 -39.43 -0.38 -2.01 16 11 C 0.70 13.26 8.01 -86.92 -0.70 12.56 16 12 O -0.56 -12.90 13.20 5.29 0.07 -12.83 16 13 N -0.68 -12.90 5.22 -14.27 -0.07 -12.98 16 14 C 0.17 3.98 6.25 -83.76 -0.52 3.45 16 15 C -0.26 -6.02 9.97 -39.10 -0.39 -6.41 16 16 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 17 C -0.17 -4.68 8.69 -38.84 -0.34 -5.02 16 18 C 0.12 3.41 5.57 -106.85 -0.59 2.81 16 19 C -0.46 -12.88 9.05 -37.74 -0.34 -13.22 16 20 H 0.08 2.16 7.90 -52.49 -0.41 1.75 16 21 C 0.08 1.98 5.16 -17.35 -0.09 1.89 16 22 N -0.80 -21.15 10.94 55.55 0.61 -20.55 16 23 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 27 C -0.21 -5.57 8.39 -38.69 -0.32 -5.89 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 6.29 -51.93 -0.33 0.27 16 30 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 32 H 0.10 1.30 7.36 -51.93 -0.38 0.91 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.39 2.77 9.06 45.56 0.41 3.19 16 37 H 0.14 2.30 7.57 -52.49 -0.40 1.90 16 38 H 0.39 5.94 6.51 -40.82 -0.27 5.67 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.12 3.27 6.17 -52.49 -0.32 2.94 16 42 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 43 H 0.11 2.93 6.48 -52.49 -0.34 2.59 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -34.41 365.19 -9.77 -44.18 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.54 Total: 14.47 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -5.50 Total: -16.62 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.01 Total: -42.68 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.19 Total: -19.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.41 -9.77 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205387991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.644 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds