Wall clock time and date at job start Tue Mar 31 2020 14:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99927 * 2 1 4 4 C 1.50706 * 109.47031 * 89.99713 * 3 2 1 5 5 C 1.38285 * 119.97342 * 269.97699 * 4 3 2 6 6 C 1.38244 * 120.11111 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.05397 * 359.67744 * 6 5 4 8 8 C 1.38706 * 119.94561 * 0.61643 * 7 6 5 9 9 O 1.35904 * 120.06095 * 179.67577 * 8 7 6 10 10 C 1.38127 * 119.96818 * 90.00082 * 4 3 2 11 11 C 1.34776 * 119.99591 * 179.97438 * 2 1 3 12 12 O 1.21588 * 119.99707 * 180.02562 * 11 2 1 13 13 N 1.34778 * 120.00207 * 0.02562 * 11 2 1 14 14 C 1.39953 * 119.99757 * 174.86021 * 13 11 2 15 15 C 1.39288 * 119.94620 * 145.75715 * 14 13 11 16 16 C 1.38489 * 120.43054 * 180.02562 * 15 14 13 17 17 C 1.37680 * 120.32052 * 359.97225 * 16 15 14 18 18 C 1.40742 * 119.88405 * 0.02562 * 17 16 15 19 19 C 1.41413 * 120.21019 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99641 * 205.17692 * 19 18 17 21 21 C 1.39929 * 119.99860 * 25.17554 * 19 18 17 22 22 N 1.30829 * 120.00303 * 16.79145 * 21 19 18 23 23 Si 1.86798 * 119.99937 * 196.78611 * 21 19 18 24 24 H 1.48496 * 109.47463 * 94.96711 * 23 21 19 25 25 H 1.48501 * 109.47300 * 214.96852 * 23 21 19 26 26 H 1.48508 * 109.47138 * 334.96515 * 23 21 19 27 27 C 1.38231 * 119.94887 * 325.48793 * 14 13 11 28 28 H 1.09003 * 109.47104 * 89.99693 * 1 2 3 29 29 H 1.08995 * 109.47571 * 209.99955 * 1 2 3 30 30 H 1.09004 * 109.47316 * 330.00204 * 1 2 3 31 31 H 1.08999 * 109.47086 * 329.99592 * 3 2 1 32 32 H 1.09004 * 109.46935 * 209.99483 * 3 2 1 33 33 H 1.08000 * 119.94066 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.97183 * 179.97438 * 6 5 4 35 35 H 1.08010 * 120.02838 * 180.29864 * 7 6 5 36 36 H 0.96701 * 114.00342 * 269.73201 * 9 8 7 37 37 H 1.07993 * 120.02961 * 0.02562 * 10 4 3 38 38 H 0.96995 * 120.00010 * 354.85579 * 13 11 2 39 39 H 1.08000 * 119.78249 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.83698 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.05963 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00517 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.15890 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 1.5265 2.5026 2.0720 6 6 1.7542 2.9038 3.3752 7 6 2.9010 2.5018 4.0326 8 6 3.8304 1.7057 3.3796 9 8 4.9624 1.3144 4.0218 10 6 3.5998 1.3047 2.0714 11 6 2.1388 -1.1672 0.0005 12 8 3.3547 -1.1673 0.0010 13 7 1.4649 -2.3344 0.0005 14 6 2.1605 -3.5440 -0.1075 15 6 1.6962 -4.6751 0.5597 16 6 2.3769 -5.8770 0.4602 17 6 3.5209 -5.9670 -0.3006 18 6 4.0019 -4.8325 -0.9805 19 6 5.1765 -4.9170 -1.7634 20 1 5.7692 -4.0326 -1.9449 21 6 5.5708 -6.1464 -2.3028 22 7 4.7162 -7.1345 -2.3724 23 14 7.3175 -6.3769 -2.9236 24 1 8.1481 -6.9820 -1.8517 25 1 7.3078 -7.2730 -4.1077 26 1 7.8852 -5.0587 -3.3052 27 6 3.3041 -3.6158 -0.8807 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6270 2.8135 1.5615 34 1 1.0328 3.5279 3.8815 35 1 3.0762 2.8115 5.0524 36 1 5.7064 1.9224 3.9133 37 1 4.3200 0.6816 1.5622 38 1 0.4978 -2.3361 0.0755 39 1 0.7999 -4.6142 1.1592 40 1 2.0081 -6.7482 0.9813 41 1 4.0486 -6.9063 -0.3749 42 1 4.9893 -7.9867 -2.7467 43 1 3.6622 -2.7405 -1.4022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205387991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:57 Heat of formation + Delta-G solvation = -35.433505 kcal Electronic energy + Delta-G solvation = -26739.502481 eV Core-core repulsion = 22942.017155 eV Total energy + Delta-G solvation = -3797.485327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68348 -40.62056 -39.24215 -37.93189 -36.47191 -36.22078 -34.85242 -32.64792 -31.75006 -30.82882 -29.84458 -28.28591 -27.28778 -26.60550 -23.56759 -23.36539 -22.81089 -22.31594 -20.81303 -19.76839 -19.12840 -18.77097 -17.59004 -17.33933 -17.24712 -16.68806 -16.64142 -16.44755 -16.18456 -15.86702 -15.35736 -14.96191 -14.73428 -14.67787 -14.35896 -13.99084 -13.80610 -13.59886 -13.43857 -13.23853 -13.07210 -12.99701 -12.92539 -12.75686 -12.69101 -12.33034 -12.18345 -11.93942 -11.55343 -11.52183 -11.22501 -10.98014 -10.78344 -9.90354 -9.72302 -9.56867 -9.39457 -8.72356 -8.58322 -6.37357 0.21566 0.34090 0.92480 1.03176 1.34947 1.48405 1.49137 1.69561 2.17906 2.20755 2.69182 2.73994 3.06418 3.26894 3.73776 3.81351 3.91541 4.17046 4.23602 4.25766 4.37404 4.46254 4.60611 4.62330 4.63365 4.76340 4.87193 4.93680 5.01758 5.04934 5.10077 5.12294 5.16170 5.32341 5.43555 5.47083 5.49859 5.59897 5.72315 5.82010 5.92776 6.02183 6.09821 6.13626 6.36633 6.68544 6.80382 6.93906 6.96066 7.02125 7.58571 8.33323 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003036 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.445463 B = 9221.569638 C = 9988.238084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.622 5.622 3 C 0.170 3.830 4 C -0.097 4.097 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.148 4.148 8 C 0.082 3.918 9 O -0.519 6.519 10 C -0.150 4.150 11 C 0.691 3.309 12 O -0.613 6.613 13 N -0.672 5.672 14 C 0.177 3.823 15 C -0.254 4.254 16 C -0.089 4.089 17 C -0.200 4.200 18 C 0.091 3.909 19 C -0.503 4.503 20 H 0.060 0.940 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.982 3.018 24 H -0.260 1.260 25 H -0.260 1.260 26 H -0.266 1.266 27 C -0.235 4.235 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.406 0.594 37 H 0.095 0.905 38 H 0.415 0.585 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.290 0.710 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 19.811 7.734 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.358 5.358 3 C 0.048 3.952 4 C -0.098 4.098 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.167 4.167 8 C 0.037 3.963 9 O -0.332 6.332 10 C -0.169 4.169 11 C 0.393 3.607 12 O -0.492 6.492 13 N -0.322 5.322 14 C 0.082 3.918 15 C -0.276 4.276 16 C -0.108 4.108 17 C -0.220 4.220 18 C 0.088 3.912 19 C -0.533 4.533 20 H 0.078 0.922 21 C -0.176 4.176 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.184 1.184 26 H -0.190 1.190 27 C -0.257 4.257 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.265 0.735 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.693 19.162 7.773 23.280 hybrid contribution 1.213 -0.203 -0.475 1.318 sum -9.480 18.959 7.298 22.418 Atomic orbital electron populations 1.22091 0.76835 1.04814 1.03442 1.47113 1.08008 1.03167 1.77547 1.20373 0.98162 0.84180 0.92485 1.20272 0.94134 0.98076 0.97358 1.21418 0.99062 0.96968 0.95129 1.21436 0.96683 0.99220 0.94621 1.21684 0.95566 0.98125 1.01329 1.18767 0.89579 0.97353 0.90553 1.84799 1.22020 1.52791 1.73564 1.21515 0.99764 1.00736 0.94913 1.16224 0.85129 0.81450 0.77866 1.90933 1.13812 1.86446 1.58015 1.42522 1.10296 1.02904 1.76435 1.17314 0.93701 0.84761 0.95977 1.20422 1.05511 0.92660 1.08971 1.20817 0.95023 0.96964 0.98006 1.21296 0.99687 0.99152 1.01873 1.17821 0.91936 0.91342 0.90067 1.19733 1.08217 0.95522 1.29839 0.92160 1.26686 1.02902 0.94308 0.93745 1.69856 1.36400 1.04167 1.34301 0.85213 0.76797 0.79091 0.78679 1.18452 1.18372 1.19014 1.20924 0.99703 0.98004 1.07119 0.90786 0.91207 0.87466 0.84941 0.91922 0.82016 0.81963 0.83872 0.73521 0.88708 0.74611 0.85290 0.85812 0.87714 0.89975 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.25 127.77 1.31 2.32 16 2 N -0.62 -16.11 2.86 -869.30 -2.48 -18.59 16 3 C 0.17 3.88 5.53 85.64 0.47 4.35 16 4 C -0.10 -2.24 5.46 -19.88 -0.11 -2.35 16 5 C -0.11 -1.64 9.70 22.28 0.22 -1.42 16 6 C -0.10 -1.49 10.04 22.25 0.22 -1.26 16 7 C -0.15 -2.90 9.99 22.36 0.22 -2.68 16 8 C 0.08 2.18 6.70 22.51 0.15 2.33 16 9 O -0.52 -13.84 13.50 -92.47 -1.25 -15.09 16 10 C -0.15 -4.55 9.64 22.37 0.22 -4.33 16 11 C 0.69 26.75 8.01 179.05 1.43 28.19 16 12 O -0.61 -30.48 13.20 -3.99 -0.05 -30.53 16 13 N -0.67 -25.20 5.22 -317.33 -1.66 -26.86 16 14 C 0.18 8.44 6.25 38.10 0.24 8.68 16 15 C -0.25 -11.28 9.97 22.58 0.23 -11.05 16 16 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 17 C -0.20 -11.20 8.69 22.75 0.20 -11.00 16 18 C 0.09 5.47 5.57 -21.31 -0.12 5.35 16 19 C -0.50 -30.34 9.05 23.46 0.21 -30.13 16 20 H 0.06 3.68 7.90 -2.91 -0.02 3.65 16 21 C 0.04 2.08 5.16 85.25 0.44 2.52 16 22 N -0.82 -44.94 10.94 21.82 0.24 -44.70 16 23 Si 0.98 41.35 29.59 68.60 2.03 43.38 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 C -0.24 -13.40 8.39 22.85 0.19 -13.20 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.98 6.29 -2.39 -0.02 0.96 16 30 H 0.11 0.84 8.07 -2.39 -0.02 0.82 16 31 H 0.13 1.73 8.02 -2.39 -0.02 1.71 16 32 H 0.06 1.84 7.36 -2.39 -0.02 1.83 16 33 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.41 6.49 9.06 -74.06 -0.67 5.82 16 37 H 0.09 3.64 7.57 -2.91 -0.02 3.62 16 38 H 0.41 11.57 6.51 -92.71 -0.60 10.97 16 39 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 41 H 0.10 6.04 6.17 -2.91 -0.02 6.02 16 42 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 43 H 0.08 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -83.57 365.19 2.36 -81.21 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.21 Total: 38.92 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 5.75 Total: -27.74 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.90 Total: -90.15 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.30 Total: -45.62 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -83.57 2.36 -81.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205387991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.779 kcal (2) G-P(sol) polarization free energy of solvation -83.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds