Wall clock time and date at job start Tue Mar 31 2020 14:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00273 * 2 1 4 4 C 1.50692 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.38305 * 119.96487 * 270.01969 * 4 3 2 6 6 C 1.38261 * 120.14372 * 179.97438 * 5 4 3 7 7 C 1.38134 * 120.06820 * 359.95796 * 6 5 4 8 8 C 1.38852 * 119.92774 * 0.04339 * 7 6 5 9 9 N 1.39941 * 120.06593 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00228 * 324.81523 * 9 8 7 11 11 O 1.21587 * 120.00125 * 4.31212 * 10 9 8 12 12 N 1.34776 * 120.00056 * 184.30887 * 10 9 8 13 13 C 1.39946 * 120.00192 * 184.30860 * 12 10 9 14 14 C 1.39291 * 119.94424 * 324.55619 * 13 12 10 15 15 C 1.38487 * 120.42347 * 179.72261 * 14 13 12 16 16 C 1.37674 * 120.32667 * 0.55403 * 15 14 13 17 17 C 1.40744 * 119.88309 * 359.72497 * 16 15 14 18 18 C 1.41408 * 120.21156 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00263 * 34.20083 * 18 17 16 20 20 C 1.39941 * 119.99784 * 214.20252 * 18 17 16 21 21 N 1.30825 * 120.00023 * 5.54437 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 185.54231 * 20 18 17 23 23 H 1.48505 * 109.47043 * 59.99746 * 22 20 18 24 24 H 1.48503 * 109.47067 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46995 * 300.00237 * 22 20 18 26 26 C 1.38241 * 119.94796 * 144.83235 * 13 12 10 27 27 C 1.38088 * 119.96513 * 89.99824 * 4 3 2 28 28 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46910 * 299.99575 * 1 2 3 30 30 H 1.08999 * 109.47423 * 59.99473 * 1 2 3 31 31 H 1.09001 * 109.47236 * 59.99961 * 3 2 1 32 32 H 1.09004 * 109.46811 * 300.00522 * 3 2 1 33 33 H 1.08000 * 119.92831 * 359.97438 * 5 4 3 34 34 H 1.07994 * 119.96894 * 179.97438 * 6 5 4 35 35 H 1.07995 * 120.03820 * 179.97438 * 7 6 5 36 36 H 0.97000 * 119.99363 * 144.81482 * 9 8 7 37 37 H 0.97006 * 119.99811 * 4.30818 * 12 10 9 38 38 H 1.08000 * 119.78710 * 359.97438 * 14 13 12 39 39 H 1.08008 * 119.83858 * 180.27722 * 15 14 13 40 40 H 1.07996 * 120.06315 * 179.74697 * 16 15 14 41 41 H 0.96998 * 120.00059 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.15591 * 359.97438 * 26 13 12 43 43 H 1.07997 * 120.03930 * 359.74995 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1312 1.1973 6 6 5.5799 1.0215 1.2010 7 6 6.2729 0.9657 0.0074 8 6 5.5840 1.0209 -1.1969 9 7 6.2833 0.9652 -2.4078 10 6 7.4964 1.5430 -2.5127 11 8 8.0176 2.0442 -1.5352 12 7 8.1318 1.5653 -3.7010 13 6 9.4284 2.0839 -3.7917 14 6 9.8001 3.1689 -3.0012 15 6 11.0822 3.6865 -3.0788 16 6 12.0008 3.1409 -3.9471 17 6 11.6378 2.0481 -4.7562 18 6 12.5759 1.4819 -5.6501 19 1 13.6224 1.4492 -5.3854 20 6 12.1482 0.9640 -6.8778 21 7 10.9003 1.1003 -7.2462 22 14 13.3592 0.0782 -7.9906 23 1 13.9153 -1.1002 -7.2782 24 1 12.6621 -0.3710 -9.2225 25 1 14.4629 1.0020 -8.3558 26 6 10.3365 1.5223 -4.6698 27 6 4.1996 1.1321 -1.1972 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.6619 1.1739 2.1318 34 1 6.1151 0.9790 2.1380 35 1 7.3495 0.8804 0.0109 36 1 5.8949 0.5108 -3.1716 37 1 7.6903 1.2217 -4.4936 38 1 9.0850 3.6068 -2.3206 39 1 11.3617 4.5252 -2.4582 40 1 12.9983 3.5505 -4.0070 41 1 10.6037 0.7410 -8.0970 42 1 10.0479 0.6836 -5.2860 43 1 3.6607 1.1708 -2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205390048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:37 Heat of formation + Delta-G solvation = -19.789666 kcal Electronic energy + Delta-G solvation = -25837.251744 eV Core-core repulsion = 22040.444786 eV Total energy + Delta-G solvation = -3796.806959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63334 -39.22858 -37.92921 -37.21686 -34.75176 -34.27589 -33.23567 -31.90644 -29.97982 -29.48660 -28.04391 -27.43862 -25.55405 -25.21423 -23.01617 -22.30491 -21.26289 -20.71083 -19.92361 -18.28124 -17.60381 -17.14591 -16.67986 -16.30222 -16.13015 -15.59932 -15.31635 -15.06144 -14.75153 -14.65687 -14.39498 -14.14096 -13.74260 -13.17698 -12.88232 -12.79743 -12.68418 -12.53601 -12.35226 -11.81678 -11.68517 -11.64854 -11.28511 -11.21416 -11.12651 -10.78577 -10.67763 -10.27084 -10.03177 -10.00975 -9.74465 -9.60456 -9.19642 -9.02939 -8.87001 -8.10535 -7.29600 -7.01419 -6.62638 -4.39262 1.24689 1.31594 2.63205 2.87223 2.90560 3.07789 3.11436 3.21405 3.35654 3.62354 3.97181 3.98768 4.43051 4.63494 4.69766 4.71182 4.94912 4.97658 5.01930 5.09973 5.18013 5.31862 5.36183 5.51278 5.61130 5.67007 5.88840 6.22027 6.30331 6.33950 6.52152 6.54073 6.65061 6.67451 6.76902 6.80845 6.93531 7.05904 7.08277 7.20409 7.33056 7.60071 7.78972 7.93882 8.04205 8.23973 8.34663 8.58434 8.84609 8.90643 8.96210 10.29273 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002241 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.413026 B =12491.880444 C =13347.613669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.105 3.895 4 C -0.079 4.079 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.111 4.111 8 C 0.171 3.829 9 N -0.691 5.691 10 C 0.699 3.301 11 O -0.558 6.558 12 N -0.671 5.671 13 C 0.152 3.848 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.217 4.217 17 C 0.120 3.880 18 C -0.469 4.469 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.816 5.816 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.166 4.166 27 C -0.130 4.130 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.405 0.595 37 H 0.401 0.599 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.277 0.723 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 -2.320 9.454 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.123 4.123 7 C -0.131 4.131 8 C 0.076 3.924 9 N -0.339 5.339 10 C 0.400 3.600 11 O -0.433 6.433 12 N -0.317 5.317 13 C 0.060 3.940 14 C -0.236 4.236 15 C -0.112 4.112 16 C -0.237 4.237 17 C 0.117 3.883 18 C -0.500 4.500 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.443 5.443 22 Si 0.737 3.263 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.188 4.188 27 C -0.151 4.151 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.241 0.759 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.884 -2.077 10.075 20.632 hybrid contribution -0.191 -0.525 -1.520 1.619 sum -18.075 -2.602 8.555 20.166 Atomic orbital electron populations 1.22760 0.81094 1.02835 0.99967 1.87990 1.19486 1.27550 1.95395 1.21324 0.89899 0.84983 1.00871 1.19213 0.93544 1.02223 0.93012 1.20953 0.94318 1.01453 0.97166 1.21047 0.93825 0.99474 0.97938 1.21487 1.01868 0.99087 0.90693 1.17457 0.90298 0.99354 0.85316 1.42682 1.19144 1.58776 1.13290 1.15957 0.80292 0.79406 0.84348 1.90913 1.65608 1.50281 1.36498 1.42578 1.16294 1.64436 1.08362 1.17449 0.81923 0.94680 0.99970 1.20528 0.97533 0.99842 1.05713 1.20471 0.93616 0.98838 0.98287 1.21173 0.99041 0.99929 1.03575 1.17363 0.91784 0.89163 0.90016 1.19439 0.95210 1.34971 1.00379 0.90559 1.25812 0.95717 0.94058 0.98527 1.69748 1.16340 1.37036 1.21204 0.86319 0.80832 0.80248 0.78939 1.19065 1.20517 1.19148 1.21097 0.93975 1.01996 1.01746 1.20706 0.92351 1.03844 0.98156 0.89567 0.94068 0.94036 0.92342 0.92457 0.86167 0.85591 0.83744 0.75940 0.76505 0.87272 0.88911 0.88716 0.91218 0.86057 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.89 10.69 -35.23 -0.38 -4.26 16 3 C 0.11 0.94 6.06 36.00 0.22 1.16 16 4 C -0.08 -0.88 5.51 -104.66 -0.58 -1.46 16 5 C -0.12 -1.32 9.70 -39.55 -0.38 -1.70 16 6 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 7 C -0.11 -1.63 8.69 -39.39 -0.34 -1.97 16 8 C 0.17 2.38 6.30 -83.69 -0.53 1.85 16 9 N -0.69 -9.51 5.34 -14.22 -0.08 -9.59 16 10 C 0.70 12.60 8.24 -86.92 -0.72 11.88 16 11 O -0.56 -11.88 11.24 5.29 0.06 -11.82 16 12 N -0.67 -12.46 5.34 -14.27 -0.08 -12.53 16 13 C 0.15 3.50 6.28 -83.76 -0.53 2.98 16 14 C -0.22 -5.09 8.70 -39.10 -0.34 -5.43 16 15 C -0.09 -2.17 10.01 -39.70 -0.40 -2.57 16 16 C -0.22 -5.36 9.79 -38.84 -0.38 -5.74 16 17 C 0.12 3.16 5.50 -106.85 -0.59 2.57 16 18 C -0.47 -12.34 9.04 -37.74 -0.34 -12.68 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.83 5.31 -17.34 -0.09 1.74 16 21 N -0.82 -20.61 10.96 55.55 0.61 -20.00 16 22 Si 0.91 18.71 29.56 -169.99 -5.03 13.69 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.17 -4.18 8.54 -38.69 -0.33 -4.51 16 27 C -0.13 -1.53 9.62 -39.39 -0.38 -1.91 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 2.43 6.24 -52.49 -0.33 2.10 16 36 H 0.41 4.20 8.84 -40.82 -0.36 3.84 16 37 H 0.40 6.19 8.84 -40.82 -0.36 5.83 16 38 H 0.11 2.58 6.24 -52.49 -0.33 2.25 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.12 3.09 6.46 -52.49 -0.34 2.75 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -31.01 366.45 -9.83 -40.84 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.48 Total: 14.29 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -4.99 Total: -16.14 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.46 Total: -42.13 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.32 Total: -16.08 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.01 -9.83 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205390048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.052 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds