Wall clock time and date at job start Tue Mar 31 2020 14:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00273 * 2 1 4 4 C 1.50692 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.38305 * 119.96487 * 270.01969 * 4 3 2 6 6 C 1.38261 * 120.14372 * 179.97438 * 5 4 3 7 7 C 1.38134 * 120.06820 * 359.95796 * 6 5 4 8 8 C 1.38852 * 119.92774 * 0.04339 * 7 6 5 9 9 N 1.39941 * 120.06593 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00228 * 324.81523 * 9 8 7 11 11 O 1.21587 * 120.00125 * 4.31212 * 10 9 8 12 12 N 1.34776 * 120.00056 * 184.30887 * 10 9 8 13 13 C 1.39946 * 120.00192 * 184.30860 * 12 10 9 14 14 C 1.39291 * 119.94424 * 324.55619 * 13 12 10 15 15 C 1.38487 * 120.42347 * 179.72261 * 14 13 12 16 16 C 1.37674 * 120.32667 * 0.55403 * 15 14 13 17 17 C 1.40744 * 119.88309 * 359.72497 * 16 15 14 18 18 C 1.41408 * 120.21156 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00263 * 34.20083 * 18 17 16 20 20 C 1.39941 * 119.99784 * 214.20252 * 18 17 16 21 21 N 1.30825 * 120.00023 * 5.54437 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 185.54231 * 20 18 17 23 23 H 1.48505 * 109.47043 * 59.99746 * 22 20 18 24 24 H 1.48503 * 109.47067 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46995 * 300.00237 * 22 20 18 26 26 C 1.38241 * 119.94796 * 144.83235 * 13 12 10 27 27 C 1.38088 * 119.96513 * 89.99824 * 4 3 2 28 28 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46910 * 299.99575 * 1 2 3 30 30 H 1.08999 * 109.47423 * 59.99473 * 1 2 3 31 31 H 1.09001 * 109.47236 * 59.99961 * 3 2 1 32 32 H 1.09004 * 109.46811 * 300.00522 * 3 2 1 33 33 H 1.08000 * 119.92831 * 359.97438 * 5 4 3 34 34 H 1.07994 * 119.96894 * 179.97438 * 6 5 4 35 35 H 1.07995 * 120.03820 * 179.97438 * 7 6 5 36 36 H 0.97000 * 119.99363 * 144.81482 * 9 8 7 37 37 H 0.97006 * 119.99811 * 4.30818 * 12 10 9 38 38 H 1.08000 * 119.78710 * 359.97438 * 14 13 12 39 39 H 1.08008 * 119.83858 * 180.27722 * 15 14 13 40 40 H 1.07996 * 120.06315 * 179.74697 * 16 15 14 41 41 H 0.96998 * 120.00059 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.15591 * 359.97438 * 26 13 12 43 43 H 1.07997 * 120.03930 * 359.74995 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1312 1.1973 6 6 5.5799 1.0215 1.2010 7 6 6.2729 0.9657 0.0074 8 6 5.5840 1.0209 -1.1969 9 7 6.2833 0.9652 -2.4078 10 6 7.4964 1.5430 -2.5127 11 8 8.0176 2.0442 -1.5352 12 7 8.1318 1.5653 -3.7010 13 6 9.4284 2.0839 -3.7917 14 6 9.8001 3.1689 -3.0012 15 6 11.0822 3.6865 -3.0788 16 6 12.0008 3.1409 -3.9471 17 6 11.6378 2.0481 -4.7562 18 6 12.5759 1.4819 -5.6501 19 1 13.6224 1.4492 -5.3854 20 6 12.1482 0.9640 -6.8778 21 7 10.9003 1.1003 -7.2462 22 14 13.3592 0.0782 -7.9906 23 1 13.9153 -1.1002 -7.2782 24 1 12.6621 -0.3710 -9.2225 25 1 14.4629 1.0020 -8.3558 26 6 10.3365 1.5223 -4.6698 27 6 4.1996 1.1321 -1.1972 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.6619 1.1739 2.1318 34 1 6.1151 0.9790 2.1380 35 1 7.3495 0.8804 0.0109 36 1 5.8949 0.5108 -3.1716 37 1 7.6903 1.2217 -4.4936 38 1 9.0850 3.6068 -2.3206 39 1 11.3617 4.5252 -2.4582 40 1 12.9983 3.5505 -4.0070 41 1 10.6037 0.7410 -8.0970 42 1 10.0479 0.6836 -5.2860 43 1 3.6607 1.1708 -2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205390048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:36 Heat of formation + Delta-G solvation = -37.926380 kcal Electronic energy + Delta-G solvation = -25838.038211 eV Core-core repulsion = 22040.444786 eV Total energy + Delta-G solvation = -3797.593426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95841 -40.35121 -39.19652 -38.38883 -36.13790 -35.81892 -35.03511 -32.79365 -31.48415 -31.12783 -29.58816 -28.10530 -27.13985 -26.22355 -24.30843 -23.29271 -23.08020 -22.17465 -21.38883 -19.71370 -19.20296 -18.45430 -17.51796 -17.28634 -17.05923 -16.98305 -16.68858 -16.42491 -16.25697 -15.85264 -15.76986 -15.33329 -14.91275 -14.66651 -14.54857 -14.20020 -13.84264 -13.59914 -13.50807 -13.12952 -13.02853 -12.80100 -12.69759 -12.59817 -12.32923 -12.29071 -12.14590 -11.84535 -11.57818 -11.41879 -11.21440 -11.00479 -10.71112 -10.61488 -9.83628 -9.23715 -9.19436 -8.80756 -8.47619 -6.36887 0.27401 0.35732 0.86653 1.05874 1.41544 1.51027 1.51977 1.55234 2.01713 2.25489 2.65640 2.82003 3.12547 3.20870 3.68321 3.87603 3.93016 4.15822 4.31131 4.38365 4.43375 4.45527 4.53452 4.59136 4.62716 4.71277 4.77510 4.83022 4.91235 4.98440 5.09068 5.15182 5.15862 5.30453 5.36064 5.39636 5.55461 5.60068 5.74397 5.79197 5.98757 6.05346 6.11001 6.12016 6.23978 6.39040 6.68062 6.89388 6.97102 7.01649 7.41837 8.43986 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002241 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.413026 B =12491.880444 C =13347.613669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.106 3.894 4 C -0.082 4.082 5 C -0.115 4.115 6 C -0.108 4.108 7 C -0.137 4.137 8 C 0.147 3.853 9 N -0.671 5.671 10 C 0.699 3.301 11 O -0.592 6.592 12 N -0.666 5.666 13 C 0.161 3.839 14 C -0.226 4.226 15 C -0.091 4.091 16 C -0.236 4.236 17 C 0.091 3.909 18 C -0.503 4.503 19 H 0.074 0.926 20 C 0.034 3.966 21 N -0.838 5.838 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.184 4.184 27 C -0.125 4.125 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.422 0.578 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.285 0.715 42 H 0.112 0.888 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 -2.636 9.544 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.030 3.970 4 C -0.083 4.083 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.158 4.158 8 C 0.053 3.947 9 N -0.320 5.320 10 C 0.400 3.600 11 O -0.470 6.470 12 N -0.313 5.313 13 C 0.067 3.933 14 C -0.248 4.248 15 C -0.110 4.110 16 C -0.255 4.255 17 C 0.088 3.912 18 C -0.534 4.534 19 H 0.093 0.907 20 C -0.179 4.179 21 N -0.465 5.465 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.188 1.188 26 C -0.206 4.206 27 C -0.146 4.146 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.261 0.739 37 H 0.252 0.748 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.057 -2.413 10.164 22.615 hybrid contribution 0.292 -0.417 -1.423 1.512 sum -19.765 -2.831 8.741 21.797 Atomic orbital electron populations 1.22942 0.79323 1.03768 1.01116 1.87938 1.21465 1.28116 1.95652 1.21383 0.88129 0.85020 1.02495 1.19611 0.95168 1.00846 0.92693 1.21295 0.93786 0.99840 0.98473 1.21255 0.94669 0.99035 0.97696 1.21403 1.00710 1.01301 0.92351 1.17654 0.91222 1.01087 0.84748 1.42379 1.17590 1.57862 1.14197 1.16032 0.81179 0.79274 0.83471 1.90892 1.66816 1.51789 1.37459 1.42385 1.15048 1.64439 1.09458 1.17445 0.83291 0.93985 0.98586 1.20689 0.97879 1.00233 1.05958 1.20776 0.93171 0.99183 0.97837 1.21336 0.99881 1.00145 1.04181 1.17765 0.92669 0.90008 0.90766 1.19692 0.95280 1.36792 1.01622 0.90741 1.26640 0.97615 0.94214 0.99442 1.69803 1.17777 1.37054 1.21893 0.85231 0.78399 0.78842 0.77049 1.18747 1.19271 1.18779 1.21017 0.94347 1.02416 1.02843 1.20927 0.91282 1.02795 0.99596 0.88864 0.92757 0.93019 0.90489 0.91135 0.83472 0.83998 0.86740 0.73928 0.74787 0.87273 0.86145 0.87865 0.90430 0.86988 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.19 10.69 -148.98 -1.59 -8.79 16 3 C 0.11 1.55 6.06 71.23 0.43 1.99 16 4 C -0.08 -1.64 5.51 -19.89 -0.11 -1.75 16 5 C -0.12 -2.28 9.70 22.29 0.22 -2.06 16 6 C -0.11 -2.54 10.04 22.25 0.22 -2.32 16 7 C -0.14 -4.09 8.69 22.39 0.19 -3.90 16 8 C 0.15 4.04 6.30 38.15 0.24 4.28 16 9 N -0.67 -18.28 5.34 -317.18 -1.69 -19.97 16 10 C 0.70 25.52 8.24 179.06 1.48 27.00 16 11 O -0.59 -25.91 11.24 -3.99 -0.04 -25.95 16 12 N -0.67 -25.01 5.34 -317.33 -1.69 -26.70 16 13 C 0.16 7.57 6.28 38.10 0.24 7.81 16 14 C -0.23 -10.86 8.70 22.58 0.20 -10.66 16 15 C -0.09 -4.26 10.01 22.20 0.22 -4.04 16 16 C -0.24 -11.88 9.79 22.75 0.22 -11.66 16 17 C 0.09 4.94 5.50 -21.31 -0.12 4.82 16 18 C -0.50 -27.14 9.04 23.46 0.21 -26.93 16 19 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 20 C 0.03 1.68 5.31 85.26 0.45 2.14 16 21 N -0.84 -42.71 10.96 21.83 0.24 -42.47 16 22 Si 0.98 38.23 29.56 68.60 2.03 40.26 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 C -0.18 -9.54 8.54 22.85 0.20 -9.35 16 27 C -0.13 -2.73 9.62 22.39 0.22 -2.52 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.11 4.09 6.24 -2.91 -0.02 4.07 16 36 H 0.42 8.33 8.84 -92.71 -0.82 7.51 16 37 H 0.42 12.83 8.84 -92.70 -0.82 12.01 16 38 H 0.11 5.23 6.24 -2.91 -0.02 5.21 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 42 H 0.11 5.91 6.46 -2.91 -0.02 5.89 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.44 366.45 2.42 -66.02 By element: Atomic # 1 Polarization: 43.85 SS G_CDS: -0.58 Total: 43.27 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.76 Total: -25.66 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.15 Total: -89.15 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.64 Total: -34.74 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -68.44 2.42 -66.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205390048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.094 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds