Wall clock time and date at job start Tue Mar 31 2020 14:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41595 * 114.00153 * 2 1 4 4 C 1.46503 * 119.99940 * 275.48288 * 3 2 1 5 5 C 1.34773 * 120.00087 * 95.47994 * 3 2 1 6 6 O 1.21559 * 120.00233 * 186.63163 * 5 3 2 7 7 C 1.47862 * 120.00263 * 6.62983 * 5 3 2 8 8 C 1.39631 * 120.10950 * 187.25608 * 7 5 3 9 9 C 1.38001 * 120.01457 * 179.97438 * 8 7 5 10 10 C 1.38223 * 120.23394 * 0.03957 * 9 8 7 11 11 C 1.39046 * 120.21788 * 359.97438 * 10 9 8 12 12 N 1.39621 * 120.01322 * 180.02562 * 11 10 9 13 13 C 1.38808 * 119.99933 * 327.73683 * 12 11 10 14 14 C 1.39599 * 119.84858 * 337.50445 * 13 12 11 15 15 C 1.36313 * 120.16396 * 179.76152 * 14 13 12 16 16 C 1.40910 * 119.83181 * 0.53283 * 15 14 13 17 17 C 1.41102 * 120.14849 * 179.69596 * 16 15 14 18 18 H 1.07993 * 120.00066 * 209.33780 * 17 16 15 19 19 C 1.39853 * 119.99943 * 29.34075 * 17 16 15 20 20 N 1.30911 * 119.99933 * 12.71998 * 19 17 16 21 21 Si 1.86802 * 119.99890 * 192.72118 * 19 17 16 22 22 H 1.48498 * 109.47210 * 59.99605 * 21 19 17 23 23 H 1.48501 * 109.46965 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46786 * 299.99570 * 21 19 17 25 25 C 1.40897 * 119.69533 * 359.72419 * 16 15 14 26 26 C 1.36313 * 119.84198 * 359.97438 * 25 16 15 27 27 C 1.38740 * 119.97371 * 0.27936 * 11 10 9 28 28 H 1.08998 * 109.46775 * 300.00180 * 1 2 3 29 29 H 1.08999 * 109.46890 * 59.99878 * 1 2 3 30 30 H 1.08994 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46648 * 269.99548 * 4 3 2 32 32 H 1.08994 * 109.47308 * 29.99795 * 4 3 2 33 33 H 1.08998 * 109.46869 * 150.00074 * 4 3 2 34 34 H 1.08000 * 119.99014 * 359.97433 * 8 7 5 35 35 H 1.08003 * 119.88278 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.89691 * 179.97438 * 10 9 8 37 37 H 0.97002 * 119.99889 * 148.01414 * 12 11 10 38 38 H 1.08007 * 119.91881 * 0.02562 * 14 13 12 39 39 H 1.07994 * 120.08310 * 180.26075 * 15 14 13 40 40 H 0.96998 * 119.99654 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.08072 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.91957 * 180.02562 * 26 25 16 43 43 H 1.08005 * 120.11008 * 179.72376 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.1922 2.0120 -1.2630 5 6 2.3809 1.8638 1.1618 6 8 2.7627 3.0178 1.1770 7 6 2.3291 1.0858 2.4182 8 6 2.5715 1.7139 3.6415 9 6 2.5220 0.9860 4.8129 10 6 2.2337 -0.3655 4.7809 11 6 1.9910 -1.0007 3.5681 12 7 1.6997 -2.3660 3.5408 13 6 2.2627 -3.2147 4.4839 14 6 3.4377 -2.8431 5.1396 15 6 3.9934 -3.6695 6.0704 16 6 3.3850 -4.9065 6.3619 17 6 3.9581 -5.7700 7.3195 18 1 3.8266 -6.8382 7.2307 19 6 4.6963 -5.2424 8.3837 20 7 4.6522 -3.9590 8.6383 21 14 5.7453 -6.3690 9.4419 22 1 6.7652 -7.0367 8.5939 23 1 6.4232 -5.5701 10.4943 24 1 4.8817 -7.3958 10.0786 25 6 2.2021 -5.2776 5.6923 26 6 1.6540 -4.4385 4.7683 27 6 2.0437 -0.2786 2.3846 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1732 1.7741 -1.6743 32 1 1.4191 1.7114 -1.9700 33 1 2.1238 3.0850 -1.0841 34 1 2.7977 2.7695 3.6709 35 1 2.7094 1.4740 5.7580 36 1 2.1968 -0.9299 5.7009 37 1 1.1070 -2.7219 2.8604 38 1 3.9053 -1.8964 4.9120 39 1 4.9002 -3.3787 6.5799 40 1 5.1645 -3.5931 9.3762 41 1 1.7308 -6.2245 5.9106 42 1 0.7471 -4.7215 4.2546 43 1 1.8599 -0.7708 1.4409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211396014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:59 Heat of formation + Delta-G solvation = 44.402633 kcal Electronic energy + Delta-G solvation = -26689.951831 eV Core-core repulsion = 22895.928459 eV Total energy + Delta-G solvation = -3794.023372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38758 -39.07256 -37.72038 -37.44666 -35.02856 -33.26455 -33.11375 -31.24647 -29.91018 -29.59389 -27.98113 -27.74650 -26.46036 -24.71364 -23.16293 -22.17433 -21.01351 -20.87737 -19.98106 -18.16146 -17.35631 -17.19704 -16.51426 -16.36120 -16.17754 -15.74114 -15.13197 -14.75333 -14.59958 -14.30011 -14.21528 -13.94858 -13.49908 -13.26161 -13.07617 -12.86938 -12.85084 -12.42659 -12.24881 -12.03688 -11.86478 -11.70284 -11.39410 -11.32924 -11.11048 -10.97484 -10.65279 -10.62347 -10.13720 -9.81798 -9.78761 -9.44497 -9.30592 -9.14024 -8.68406 -7.96871 -7.63499 -6.74844 -6.51867 -4.25291 1.02809 1.58912 1.70044 2.70118 2.87575 2.97088 3.07753 3.10324 3.21461 3.72469 3.94822 4.04173 4.15234 4.65299 4.75388 4.91368 4.94172 4.96422 5.14852 5.23142 5.26709 5.41932 5.49666 5.62528 5.66605 5.78887 5.88232 6.05726 6.09311 6.14471 6.24221 6.52244 6.66901 6.71289 6.79035 6.86434 7.02395 7.12428 7.17649 7.21245 7.43866 7.53560 7.69269 7.87054 7.99878 8.12278 8.30709 8.42446 8.60628 8.88768 8.95332 10.23999 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.002665 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.069392 B =10502.177464 C =11236.543779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.135 6.135 3 N -0.482 5.482 4 C 0.084 3.916 5 C 0.578 3.422 6 O -0.524 6.524 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.101 4.101 10 C -0.133 4.133 11 C 0.190 3.810 12 N -0.677 5.677 13 C 0.041 3.959 14 C -0.136 4.136 15 C -0.130 4.130 16 C 0.093 3.907 17 C -0.463 4.463 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.804 5.804 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.198 4.198 26 C -0.128 4.128 27 C -0.155 4.155 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.395 0.605 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.280 0.720 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 8.754 -13.823 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.138 6.138 3 N -0.262 5.262 4 C -0.057 4.057 5 C 0.371 3.629 6 O -0.402 6.402 7 C -0.122 4.122 8 C -0.131 4.131 9 C -0.120 4.120 10 C -0.155 4.155 11 C 0.089 3.911 12 N -0.298 5.298 13 C -0.053 4.053 14 C -0.157 4.157 15 C -0.150 4.150 16 C 0.091 3.909 17 C -0.494 4.494 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.430 5.430 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.218 4.218 26 C -0.149 4.149 27 C -0.177 4.177 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.229 0.771 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.492 9.329 -13.550 17.686 hybrid contribution -0.111 -0.725 0.282 0.786 sum -6.603 8.604 -13.267 17.137 Atomic orbital electron populations 1.23402 0.81520 1.04238 1.01693 1.90539 1.20390 1.07176 1.95711 1.49864 1.59133 1.09929 1.07271 1.21914 1.02290 0.97372 0.84079 1.18616 0.76145 0.85509 0.82623 1.90790 1.47999 1.16346 1.85016 1.19347 1.06891 0.93754 0.92257 1.20967 1.01077 1.00081 0.90930 1.20890 0.99616 0.93592 0.97900 1.21457 1.01680 0.94492 0.97862 1.17738 0.96138 0.84409 0.92842 1.41572 1.51673 1.02915 1.33613 1.17236 0.96675 0.92666 0.98752 1.20378 0.95092 1.00026 1.00172 1.20953 1.00664 0.95751 0.97638 1.17604 0.89907 0.92372 0.91048 1.19418 1.28355 0.94659 1.06938 0.90655 1.25848 0.95370 0.95392 0.97670 1.69808 1.33810 1.13022 1.26372 0.86361 0.80367 0.80617 0.79302 1.18966 1.20407 1.19135 1.20614 0.98108 1.00342 1.02750 1.19956 0.99064 0.95035 1.00845 1.22080 1.03413 0.93740 0.98479 0.92361 0.92722 0.87247 0.91541 0.90646 0.89250 0.85608 0.85592 0.84666 0.77067 0.88580 0.86241 0.90941 0.88666 0.89236 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 10.90 101.05 1.10 1.02 16 2 O -0.14 -1.43 7.59 -11.47 -0.09 -1.52 16 3 N -0.48 -5.61 3.36 -68.04 -0.23 -5.84 16 4 C 0.08 0.70 10.84 59.85 0.65 1.35 16 5 C 0.58 8.35 7.71 -12.32 -0.09 8.26 16 6 O -0.52 -8.58 15.92 5.31 0.08 -8.50 16 7 C -0.12 -1.78 5.86 -104.99 -0.62 -2.40 16 8 C -0.11 -1.63 9.59 -39.15 -0.38 -2.00 16 9 C -0.10 -1.51 10.02 -39.67 -0.40 -1.91 16 10 C -0.13 -2.25 7.59 -39.29 -0.30 -2.54 16 11 C 0.19 3.13 5.91 -83.83 -0.50 2.63 16 12 N -0.68 -11.45 5.43 -8.34 -0.05 -11.49 16 13 C 0.04 0.85 6.15 -83.68 -0.51 0.33 16 14 C -0.14 -3.07 7.72 -39.77 -0.31 -3.38 16 15 C -0.13 -3.27 8.59 -39.26 -0.34 -3.61 16 16 C 0.09 2.41 5.54 -106.79 -0.59 1.82 16 17 C -0.46 -12.03 9.03 -37.89 -0.34 -12.37 16 18 H 0.08 1.88 7.88 -52.49 -0.41 1.46 16 19 C 0.07 1.82 5.20 -17.34 -0.09 1.73 16 20 N -0.80 -20.53 10.98 55.54 0.61 -19.92 16 21 Si 0.91 18.59 29.58 -169.99 -5.03 13.56 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.20 -4.63 9.74 -39.27 -0.38 -5.01 16 26 C -0.13 -2.69 9.86 -39.76 -0.39 -3.08 16 27 C -0.15 -2.28 8.75 -38.95 -0.34 -2.62 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.77 7.34 -51.93 -0.38 0.38 16 34 H 0.13 1.75 7.66 -52.49 -0.40 1.35 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.14 2.54 6.47 -52.49 -0.34 2.20 16 37 H 0.40 5.61 8.87 -40.82 -0.36 5.25 16 38 H 0.10 2.08 6.06 -52.48 -0.32 1.76 16 39 H 0.12 3.14 6.33 -52.49 -0.33 2.81 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.16 2.10 4.37 -54.84 -0.24 1.86 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -29.21 361.34 -8.38 -37.59 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.30 Total: 12.46 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.83 Total: -21.78 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.34 Total: -37.26 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.00 Total: -10.02 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.21 -8.38 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211396014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.995 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds