Wall clock time and date at job start Tue Mar 31 2020 14:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41595 * 114.00153 * 2 1 4 4 C 1.46503 * 119.99940 * 275.48288 * 3 2 1 5 5 C 1.34773 * 120.00087 * 95.47994 * 3 2 1 6 6 O 1.21559 * 120.00233 * 186.63163 * 5 3 2 7 7 C 1.47862 * 120.00263 * 6.62983 * 5 3 2 8 8 C 1.39631 * 120.10950 * 187.25608 * 7 5 3 9 9 C 1.38001 * 120.01457 * 179.97438 * 8 7 5 10 10 C 1.38223 * 120.23394 * 0.03957 * 9 8 7 11 11 C 1.39046 * 120.21788 * 359.97438 * 10 9 8 12 12 N 1.39621 * 120.01322 * 180.02562 * 11 10 9 13 13 C 1.38808 * 119.99933 * 327.73683 * 12 11 10 14 14 C 1.39599 * 119.84858 * 337.50445 * 13 12 11 15 15 C 1.36313 * 120.16396 * 179.76152 * 14 13 12 16 16 C 1.40910 * 119.83181 * 0.53283 * 15 14 13 17 17 C 1.41102 * 120.14849 * 179.69596 * 16 15 14 18 18 H 1.07993 * 120.00066 * 209.33780 * 17 16 15 19 19 C 1.39853 * 119.99943 * 29.34075 * 17 16 15 20 20 N 1.30911 * 119.99933 * 12.71998 * 19 17 16 21 21 Si 1.86802 * 119.99890 * 192.72118 * 19 17 16 22 22 H 1.48498 * 109.47210 * 59.99605 * 21 19 17 23 23 H 1.48501 * 109.46965 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46786 * 299.99570 * 21 19 17 25 25 C 1.40897 * 119.69533 * 359.72419 * 16 15 14 26 26 C 1.36313 * 119.84198 * 359.97438 * 25 16 15 27 27 C 1.38740 * 119.97371 * 0.27936 * 11 10 9 28 28 H 1.08998 * 109.46775 * 300.00180 * 1 2 3 29 29 H 1.08999 * 109.46890 * 59.99878 * 1 2 3 30 30 H 1.08994 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46648 * 269.99548 * 4 3 2 32 32 H 1.08994 * 109.47308 * 29.99795 * 4 3 2 33 33 H 1.08998 * 109.46869 * 150.00074 * 4 3 2 34 34 H 1.08000 * 119.99014 * 359.97433 * 8 7 5 35 35 H 1.08003 * 119.88278 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.89691 * 179.97438 * 10 9 8 37 37 H 0.97002 * 119.99889 * 148.01414 * 12 11 10 38 38 H 1.08007 * 119.91881 * 0.02562 * 14 13 12 39 39 H 1.07994 * 120.08310 * 180.26075 * 15 14 13 40 40 H 0.96998 * 119.99654 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.08072 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.91957 * 180.02562 * 26 25 16 43 43 H 1.08005 * 120.11008 * 179.72376 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.1922 2.0120 -1.2630 5 6 2.3809 1.8638 1.1618 6 8 2.7627 3.0178 1.1770 7 6 2.3291 1.0858 2.4182 8 6 2.5715 1.7139 3.6415 9 6 2.5220 0.9860 4.8129 10 6 2.2337 -0.3655 4.7809 11 6 1.9910 -1.0007 3.5681 12 7 1.6997 -2.3660 3.5408 13 6 2.2627 -3.2147 4.4839 14 6 3.4377 -2.8431 5.1396 15 6 3.9934 -3.6695 6.0704 16 6 3.3850 -4.9065 6.3619 17 6 3.9581 -5.7700 7.3195 18 1 3.8266 -6.8382 7.2307 19 6 4.6963 -5.2424 8.3837 20 7 4.6522 -3.9590 8.6383 21 14 5.7453 -6.3690 9.4419 22 1 6.7652 -7.0367 8.5939 23 1 6.4232 -5.5701 10.4943 24 1 4.8817 -7.3958 10.0786 25 6 2.2021 -5.2776 5.6923 26 6 1.6540 -4.4385 4.7683 27 6 2.0437 -0.2786 2.3846 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1732 1.7741 -1.6743 32 1 1.4191 1.7114 -1.9700 33 1 2.1238 3.0850 -1.0841 34 1 2.7977 2.7695 3.6709 35 1 2.7094 1.4740 5.7580 36 1 2.1968 -0.9299 5.7009 37 1 1.1070 -2.7219 2.8604 38 1 3.9053 -1.8964 4.9120 39 1 4.9002 -3.3787 6.5799 40 1 5.1645 -3.5931 9.3762 41 1 1.7308 -6.2245 5.9106 42 1 0.7471 -4.7215 4.2546 43 1 1.8599 -0.7708 1.4409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211396014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:58 Heat of formation + Delta-G solvation = 29.128419 kcal Electronic energy + Delta-G solvation = -26690.614170 eV Core-core repulsion = 22895.928459 eV Total energy + Delta-G solvation = -3794.685711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51019 -40.44895 -39.01374 -38.59674 -36.58526 -34.83903 -34.11691 -32.46830 -31.51747 -31.32400 -29.53540 -28.49121 -27.27590 -26.41611 -24.40061 -23.51226 -22.71783 -22.26075 -21.24219 -19.31681 -19.17823 -18.38009 -17.73085 -17.44705 -17.25279 -17.03490 -16.81616 -15.89680 -15.70950 -15.55927 -15.38175 -15.31305 -14.88729 -14.58437 -14.31141 -14.10925 -13.97388 -13.71963 -13.57086 -13.48716 -13.25749 -12.89378 -12.80593 -12.72999 -12.56338 -12.41872 -12.30705 -11.74060 -11.67531 -11.56438 -11.20703 -10.92490 -10.77875 -10.24204 -9.87961 -9.53910 -9.42411 -8.56168 -8.13364 -6.13963 -0.18329 0.42516 0.75926 1.05741 1.15544 1.40295 1.50844 1.53291 1.69999 2.24958 2.55717 2.78945 2.86168 2.97637 3.77129 3.86474 4.02248 4.29059 4.33163 4.36256 4.38248 4.41001 4.43404 4.44874 4.52167 4.55657 4.61417 4.75513 4.81728 4.97164 5.01993 5.13579 5.21163 5.21579 5.30944 5.37934 5.46394 5.52311 5.58985 5.73912 5.89305 5.93930 6.13442 6.24587 6.32912 6.59288 6.77788 6.83652 7.00788 7.02223 7.15204 8.43878 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.002665 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.069392 B =10502.177464 C =11236.543779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.146 6.146 3 N -0.478 5.478 4 C 0.079 3.921 5 C 0.574 3.426 6 O -0.551 6.551 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.099 4.099 10 C -0.149 4.149 11 C 0.176 3.824 12 N -0.670 5.670 13 C 0.067 3.933 14 C -0.143 4.143 15 C -0.150 4.150 16 C 0.057 3.943 17 C -0.501 4.501 18 H 0.073 0.927 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.260 1.260 25 C -0.205 4.205 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.412 0.588 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.284 0.716 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 8.989 -15.945 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.149 6.149 3 N -0.257 5.257 4 C -0.060 4.060 5 C 0.366 3.634 6 O -0.431 6.431 7 C -0.130 4.130 8 C -0.128 4.128 9 C -0.117 4.117 10 C -0.171 4.171 11 C 0.076 3.924 12 N -0.294 5.294 13 C -0.029 4.029 14 C -0.164 4.164 15 C -0.170 4.170 16 C 0.054 3.946 17 C -0.532 4.532 18 H 0.092 0.908 19 C -0.181 4.181 20 N -0.467 5.467 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.185 1.185 25 C -0.225 4.225 26 C -0.151 4.151 27 C -0.160 4.160 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.249 0.751 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.753 9.575 -15.737 19.986 hybrid contribution 0.113 -0.619 0.703 0.943 sum -7.641 8.957 -15.034 19.095 Atomic orbital electron populations 1.23653 0.79537 1.05966 1.02211 1.90465 1.22362 1.06386 1.95699 1.49850 1.58184 1.10222 1.07404 1.22153 1.03828 0.96926 0.83119 1.18485 0.76444 0.85215 0.83240 1.90776 1.49444 1.17257 1.85622 1.19601 1.06403 0.94020 0.92949 1.21157 1.00201 1.00592 0.90900 1.21059 0.98822 0.92879 0.98960 1.21396 1.03112 0.95324 0.97286 1.17835 0.97119 0.84215 0.93273 1.41392 1.51880 1.02777 1.33317 1.17274 0.95272 0.92727 0.97644 1.20417 0.95958 0.99874 1.00136 1.20832 1.00630 0.96614 0.98886 1.17910 0.91356 0.93019 0.92288 1.19652 1.30577 0.94718 1.08242 0.90835 1.26649 0.96098 0.96800 0.98600 1.69886 1.34901 1.14610 1.27265 0.85304 0.78532 0.78613 0.77545 1.18704 1.19618 1.18468 1.20839 0.97521 1.01145 1.02964 1.20261 1.00036 0.94506 1.00280 1.22221 1.01864 0.93462 0.98468 0.93288 0.90797 0.84841 0.90884 0.87645 0.89579 0.84680 0.83797 0.87038 0.75071 0.88205 0.88501 0.90614 0.87794 0.85489 0.80840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.19 10.90 113.37 1.24 1.04 16 2 O -0.15 -2.62 7.59 -38.77 -0.29 -2.92 16 3 N -0.48 -9.92 3.36 -487.45 -1.64 -11.56 16 4 C 0.08 1.10 10.84 127.77 1.38 2.49 16 5 C 0.57 15.59 7.71 86.79 0.67 16.26 16 6 O -0.55 -17.41 15.92 -3.90 -0.06 -17.47 16 7 C -0.13 -3.57 5.86 -20.10 -0.12 -3.68 16 8 C -0.11 -3.06 9.59 22.55 0.22 -2.85 16 9 C -0.10 -2.86 10.02 22.21 0.22 -2.64 16 10 C -0.15 -4.99 7.59 22.46 0.17 -4.82 16 11 C 0.18 5.51 5.91 38.21 0.23 5.74 16 12 N -0.67 -21.26 5.43 -180.29 -0.98 -22.24 16 13 C 0.07 2.69 6.15 38.70 0.24 2.93 16 14 C -0.14 -6.57 7.72 22.15 0.17 -6.40 16 15 C -0.15 -7.85 8.59 22.48 0.19 -7.66 16 16 C 0.06 3.03 5.54 -21.27 -0.12 2.92 16 17 C -0.50 -27.07 9.03 23.36 0.21 -26.86 16 18 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 19 C 0.03 1.59 5.20 85.22 0.44 2.04 16 20 N -0.84 -44.76 10.98 21.81 0.24 -44.52 16 21 Si 0.98 39.05 29.58 68.60 2.03 41.08 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.20 -9.61 9.74 22.47 0.22 -9.39 16 26 C -0.13 -5.25 9.86 22.15 0.22 -5.03 16 27 C -0.14 -3.78 8.75 22.68 0.20 -3.58 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.30 7.34 -2.39 -0.02 1.28 16 34 H 0.14 3.58 7.66 -2.91 -0.02 3.56 16 35 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.11 4.28 6.47 -2.91 -0.02 4.26 16 37 H 0.41 10.34 8.87 -92.71 -0.82 9.52 16 38 H 0.10 4.43 6.06 -2.91 -0.02 4.41 16 39 H 0.10 5.43 6.33 -2.91 -0.02 5.41 16 40 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 41 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.18 4.13 4.37 -40.30 -0.18 3.95 16 Total: -1.00 -65.44 361.34 5.15 -60.30 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.07 Total: 36.83 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 5.78 Total: -39.49 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.38 Total: -78.32 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.36 Total: -20.39 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -65.44 5.15 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211396014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.425 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds