Wall clock time and date at job start Tue Mar 31 2020 14:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41597 * 113.99723 * 2 1 4 4 C 1.46504 * 119.99657 * 275.93664 * 3 2 1 5 5 C 1.34771 * 120.00156 * 95.94493 * 3 2 1 6 6 O 1.21556 * 119.99746 * 185.95850 * 5 3 2 7 7 C 1.47863 * 120.00300 * 5.95202 * 5 3 2 8 8 C 1.39634 * 120.10454 * 7.11065 * 7 5 3 9 9 C 1.37997 * 120.01534 * 180.02562 * 8 7 5 10 10 C 1.38227 * 120.23176 * 359.67539 * 9 8 7 11 11 C 1.39044 * 120.21406 * 0.60311 * 10 9 8 12 12 N 1.39624 * 120.01070 * 179.69649 * 11 10 9 13 13 C 1.38687 * 119.99621 * 0.23802 * 12 11 10 14 14 C 1.38809 * 120.29489 * 252.65737 * 13 12 11 15 15 C 1.38120 * 120.02047 * 180.30269 * 14 13 12 16 16 C 1.38926 * 120.63425 * 359.70254 * 15 14 13 17 17 C 1.36420 * 120.60842 * 359.97438 * 16 15 14 18 18 C 1.40753 * 119.95138 * 0.03214 * 17 16 15 19 19 C 1.41011 * 120.30738 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99626 * 188.46381 * 19 18 17 21 21 C 1.39907 * 120.00300 * 8.46449 * 19 18 17 22 22 N 1.30889 * 120.00105 * 209.51602 * 21 19 18 23 23 Si 1.86805 * 120.00027 * 29.52028 * 21 19 18 24 24 H 1.48496 * 109.46928 * 262.77870 * 23 21 19 25 25 H 1.48495 * 109.46880 * 22.77622 * 23 21 19 26 26 H 1.48498 * 109.47190 * 142.78054 * 23 21 19 27 27 C 1.38744 * 119.97918 * 359.42087 * 11 10 9 28 28 H 1.09006 * 109.46560 * 60.00786 * 1 2 3 29 29 H 1.09002 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47699 * 300.00629 * 1 2 3 31 31 H 1.09000 * 109.47121 * 270.00005 * 4 3 2 32 32 H 1.09002 * 109.47059 * 30.00388 * 4 3 2 33 33 H 1.08995 * 109.46954 * 150.00341 * 4 3 2 34 34 H 1.07996 * 119.99242 * 0.02562 * 8 7 5 35 35 H 1.08002 * 119.88318 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.89037 * 180.30797 * 10 9 8 37 37 H 0.96997 * 119.99970 * 180.23169 * 12 11 10 38 38 H 1.08007 * 119.99078 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.68501 * 179.71682 * 15 14 13 40 40 H 1.08000 * 119.69799 * 180.02562 * 16 15 14 41 41 H 1.08002 * 120.02895 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00028 * 354.86027 * 22 21 19 43 43 H 1.07996 * 120.11051 * 180.24951 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1829 2.0161 -1.2620 5 6 2.3894 1.8601 1.1609 6 8 2.7827 3.0101 1.1749 7 6 2.3327 1.0827 2.4174 8 6 2.0243 -0.2788 2.3853 9 6 1.9713 -1.0024 3.5592 10 6 2.2294 -0.3858 4.7691 11 6 2.5318 0.9706 4.8127 12 7 2.7856 1.5905 6.0378 13 6 2.7408 0.8521 7.2109 14 6 1.6866 1.0127 8.0996 15 6 1.6510 0.2789 9.2692 16 6 2.6601 -0.6283 9.5668 17 6 3.7048 -0.8114 8.7088 18 6 3.7664 -0.0768 7.5098 19 6 4.8430 -0.2597 6.6177 20 1 4.9596 0.3991 5.7698 21 6 5.7602 -1.2945 6.8309 22 7 7.0000 -1.1626 6.4326 23 14 5.2153 -2.8645 7.6840 24 1 5.5701 -2.7939 9.1243 25 1 3.7452 -3.0195 7.5434 26 1 5.8975 -4.0279 7.0626 27 6 2.5870 1.7068 3.6380 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1608 1.7796 -1.6813 32 1 1.4046 1.7177 -1.9644 33 1 2.1157 3.0885 -1.0792 34 1 1.8271 -0.7656 1.4417 35 1 1.7321 -2.0552 3.5320 36 1 2.1913 -0.9585 5.6840 37 1 2.9932 2.5375 6.0684 38 1 0.8963 1.7149 7.8785 39 1 0.8305 0.4116 9.9590 40 1 2.6168 -1.1944 10.4855 41 1 4.4840 -1.5195 8.9493 42 1 7.2654 -0.3803 5.9241 43 1 2.8257 2.7596 3.6690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211400884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:02 Heat of formation + Delta-G solvation = 46.114381 kcal Electronic energy + Delta-G solvation = -27407.046770 eV Core-core repulsion = 23613.097625 eV Total energy + Delta-G solvation = -3793.949145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16975 -38.94222 -37.58194 -37.43007 -34.49886 -33.91927 -33.12413 -30.75243 -30.32332 -29.94523 -27.73914 -27.32151 -26.24509 -24.71657 -22.94070 -21.79387 -21.65925 -20.65838 -19.82411 -18.22365 -18.00520 -17.06235 -16.55894 -16.32678 -16.12012 -15.41713 -14.90730 -14.56759 -14.47063 -14.32225 -14.14811 -14.11158 -13.57337 -13.24957 -13.06948 -12.85783 -12.72377 -12.58504 -12.24164 -12.17160 -12.09100 -11.63427 -11.42336 -10.99376 -10.88772 -10.63929 -10.59378 -10.30788 -10.07740 -9.69296 -9.62804 -9.32374 -9.17496 -8.98022 -8.43390 -7.85483 -7.76256 -7.54603 -6.67291 -4.61289 1.30313 1.73064 2.09985 2.55009 2.66980 3.05604 3.09975 3.29608 3.44376 3.87084 3.88542 4.33741 4.39917 4.47434 4.89311 5.02173 5.06033 5.08508 5.25841 5.31458 5.37692 5.42773 5.51817 5.80463 5.93296 5.96222 6.01717 6.09076 6.16057 6.22323 6.37235 6.41756 6.53864 6.78132 6.89287 6.96239 7.07937 7.12743 7.29988 7.34357 7.38742 7.46421 7.59409 7.78801 7.88340 8.05095 8.15036 8.34134 8.44665 8.53694 8.83819 9.76081 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003719 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.927722 B = 7527.573451 C = 8080.618199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.134 6.134 3 N -0.483 5.483 4 C 0.084 3.916 5 C 0.579 3.421 6 O -0.526 6.526 7 C -0.111 4.111 8 C -0.158 4.158 9 C -0.098 4.098 10 C -0.132 4.132 11 C 0.222 3.778 12 N -0.665 5.665 13 C -0.007 4.007 14 C -0.065 4.065 15 C -0.264 4.264 16 C -0.064 4.064 17 C -0.251 4.251 18 C 0.096 3.904 19 C -0.480 4.480 20 H 0.083 0.917 21 C 0.043 3.957 22 N -0.785 5.785 23 Si 1.081 2.919 24 H -0.278 1.278 25 H -0.260 1.260 26 H -0.293 1.293 27 C -0.147 4.147 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.391 0.609 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.291 0.709 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 0.293 -10.826 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.137 6.137 3 N -0.263 5.263 4 C -0.056 4.056 5 C 0.372 3.628 6 O -0.403 6.403 7 C -0.115 4.115 8 C -0.179 4.179 9 C -0.117 4.117 10 C -0.154 4.154 11 C 0.118 3.882 12 N -0.285 5.285 13 C -0.101 4.101 14 C -0.085 4.085 15 C -0.283 4.283 16 C -0.082 4.082 17 C -0.270 4.270 18 C 0.091 3.909 19 C -0.506 4.506 20 H 0.101 0.899 21 C -0.181 4.181 22 N -0.405 5.405 23 Si 0.909 3.091 24 H -0.206 1.206 25 H -0.185 1.185 26 H -0.222 1.222 27 C -0.171 4.171 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.226 0.774 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.805 -0.742 -10.206 14.172 hybrid contribution -0.511 1.903 -0.573 2.052 sum -10.315 1.161 -10.779 14.965 Atomic orbital electron populations 1.23377 0.81693 1.04096 1.01600 1.90539 1.20287 1.07224 1.95666 1.49857 1.59219 1.09943 1.07292 1.21890 1.02177 0.97332 0.84208 1.18680 0.76036 0.85435 0.82690 1.90780 1.47738 1.16775 1.85027 1.19191 1.06637 0.94391 0.91277 1.22075 1.02899 0.93185 0.99708 1.20894 0.99521 0.99303 0.91951 1.21065 1.02099 0.93364 0.98913 1.17784 0.92668 0.92082 0.85649 1.41179 1.75470 1.09990 1.01893 1.17048 0.97872 1.05459 0.89707 1.20778 0.95286 0.97803 0.94590 1.20097 1.02152 1.06024 1.00062 1.20307 0.94117 0.96563 0.97247 1.20549 1.01465 1.07120 0.97868 1.17819 0.90432 0.90984 0.91707 1.20647 1.07149 1.12585 1.10260 0.89895 1.27478 0.91971 1.03358 0.95307 1.70576 1.16073 1.31305 1.22528 0.83500 0.77477 0.72851 0.75313 1.20554 1.18483 1.22170 1.20501 1.06680 0.99889 0.90073 0.92955 0.87342 0.92308 0.91661 0.90752 0.89352 0.83175 0.86295 0.85179 0.77388 0.88952 0.88966 0.88958 0.88667 0.89729 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 10.83 101.05 1.09 1.01 16 2 O -0.13 -1.56 7.61 -11.47 -0.09 -1.64 16 3 N -0.48 -6.35 3.36 -68.04 -0.23 -6.58 16 4 C 0.08 0.82 10.83 59.85 0.65 1.46 16 5 C 0.58 9.60 7.71 -12.32 -0.10 9.51 16 6 O -0.53 -9.87 15.92 5.32 0.08 -9.78 16 7 C -0.11 -1.95 5.87 -104.99 -0.62 -2.57 16 8 C -0.16 -2.55 8.84 -39.15 -0.35 -2.90 16 9 C -0.10 -1.66 10.02 -39.67 -0.40 -2.06 16 10 C -0.13 -2.61 8.50 -39.29 -0.33 -2.95 16 11 C 0.22 4.42 5.66 -83.82 -0.47 3.95 16 12 N -0.66 -13.43 4.72 -8.07 -0.04 -13.47 16 13 C -0.01 -0.16 4.83 -83.28 -0.40 -0.56 16 14 C -0.06 -1.34 9.96 -39.41 -0.39 -1.73 16 15 C -0.26 -5.37 10.03 -39.37 -0.40 -5.76 16 16 C -0.06 -1.35 9.96 -39.98 -0.40 -1.75 16 17 C -0.25 -5.87 7.48 -39.29 -0.29 -6.17 16 18 C 0.10 2.31 4.60 -106.63 -0.49 1.82 16 19 C -0.48 -12.25 8.18 -37.91 -0.31 -12.56 16 20 H 0.08 2.25 6.99 -52.48 -0.37 1.88 16 21 C 0.04 1.08 5.38 -17.33 -0.09 0.99 16 22 N -0.79 -20.35 13.66 55.55 0.76 -19.60 16 23 Si 1.08 23.57 24.82 -169.99 -4.22 19.36 16 24 H -0.28 -5.83 6.65 56.52 0.38 -5.45 16 25 H -0.26 -5.55 6.78 56.52 0.38 -5.16 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.15 -2.76 9.44 -38.95 -0.37 -3.13 16 28 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.09 0.89 7.35 -51.93 -0.38 0.50 16 34 H 0.15 2.11 4.29 -55.12 -0.24 1.88 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.82 6.39 -52.49 -0.34 2.49 16 37 H 0.39 7.19 8.83 -40.82 -0.36 6.82 16 38 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.21 2.87 -52.49 -0.15 2.06 16 42 H 0.29 7.43 8.73 -40.82 -0.36 7.08 16 43 H 0.12 2.25 7.67 -52.49 -0.40 1.85 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -28.75 354.74 -7.28 -36.03 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.23 Total: 13.74 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.66 Total: -23.40 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.49 Total: -39.65 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.00 Total: -11.43 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.22 Total: 19.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.75 -7.28 -36.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211400884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.148 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds