Wall clock time and date at job start Tue Mar 31 2020 14:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41597 * 113.99723 * 2 1 4 4 C 1.46504 * 119.99657 * 275.93664 * 3 2 1 5 5 C 1.34771 * 120.00156 * 95.94493 * 3 2 1 6 6 O 1.21556 * 119.99746 * 185.95850 * 5 3 2 7 7 C 1.47863 * 120.00300 * 5.95202 * 5 3 2 8 8 C 1.39634 * 120.10454 * 7.11065 * 7 5 3 9 9 C 1.37997 * 120.01534 * 180.02562 * 8 7 5 10 10 C 1.38227 * 120.23176 * 359.67539 * 9 8 7 11 11 C 1.39044 * 120.21406 * 0.60311 * 10 9 8 12 12 N 1.39624 * 120.01070 * 179.69649 * 11 10 9 13 13 C 1.38687 * 119.99621 * 0.23802 * 12 11 10 14 14 C 1.38809 * 120.29489 * 252.65737 * 13 12 11 15 15 C 1.38120 * 120.02047 * 180.30269 * 14 13 12 16 16 C 1.38926 * 120.63425 * 359.70254 * 15 14 13 17 17 C 1.36420 * 120.60842 * 359.97438 * 16 15 14 18 18 C 1.40753 * 119.95138 * 0.03214 * 17 16 15 19 19 C 1.41011 * 120.30738 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99626 * 188.46381 * 19 18 17 21 21 C 1.39907 * 120.00300 * 8.46449 * 19 18 17 22 22 N 1.30889 * 120.00105 * 209.51602 * 21 19 18 23 23 Si 1.86805 * 120.00027 * 29.52028 * 21 19 18 24 24 H 1.48496 * 109.46928 * 262.77870 * 23 21 19 25 25 H 1.48495 * 109.46880 * 22.77622 * 23 21 19 26 26 H 1.48498 * 109.47190 * 142.78054 * 23 21 19 27 27 C 1.38744 * 119.97918 * 359.42087 * 11 10 9 28 28 H 1.09006 * 109.46560 * 60.00786 * 1 2 3 29 29 H 1.09002 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47699 * 300.00629 * 1 2 3 31 31 H 1.09000 * 109.47121 * 270.00005 * 4 3 2 32 32 H 1.09002 * 109.47059 * 30.00388 * 4 3 2 33 33 H 1.08995 * 109.46954 * 150.00341 * 4 3 2 34 34 H 1.07996 * 119.99242 * 0.02562 * 8 7 5 35 35 H 1.08002 * 119.88318 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.89037 * 180.30797 * 10 9 8 37 37 H 0.96997 * 119.99970 * 180.23169 * 12 11 10 38 38 H 1.08007 * 119.99078 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.68501 * 179.71682 * 15 14 13 40 40 H 1.08000 * 119.69799 * 180.02562 * 16 15 14 41 41 H 1.08002 * 120.02895 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00028 * 354.86027 * 22 21 19 43 43 H 1.07996 * 120.11051 * 180.24951 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1829 2.0161 -1.2620 5 6 2.3894 1.8601 1.1609 6 8 2.7827 3.0101 1.1749 7 6 2.3327 1.0827 2.4174 8 6 2.0243 -0.2788 2.3853 9 6 1.9713 -1.0024 3.5592 10 6 2.2294 -0.3858 4.7691 11 6 2.5318 0.9706 4.8127 12 7 2.7856 1.5905 6.0378 13 6 2.7408 0.8521 7.2109 14 6 1.6866 1.0127 8.0996 15 6 1.6510 0.2789 9.2692 16 6 2.6601 -0.6283 9.5668 17 6 3.7048 -0.8114 8.7088 18 6 3.7664 -0.0768 7.5098 19 6 4.8430 -0.2597 6.6177 20 1 4.9596 0.3991 5.7698 21 6 5.7602 -1.2945 6.8309 22 7 7.0000 -1.1626 6.4326 23 14 5.2153 -2.8645 7.6840 24 1 5.5701 -2.7939 9.1243 25 1 3.7452 -3.0195 7.5434 26 1 5.8975 -4.0279 7.0626 27 6 2.5870 1.7068 3.6380 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1608 1.7796 -1.6813 32 1 1.4046 1.7177 -1.9644 33 1 2.1157 3.0885 -1.0792 34 1 1.8271 -0.7656 1.4417 35 1 1.7321 -2.0552 3.5320 36 1 2.1913 -0.9585 5.6840 37 1 2.9932 2.5375 6.0684 38 1 0.8963 1.7149 7.8785 39 1 0.8305 0.4116 9.9590 40 1 2.6168 -1.1944 10.4855 41 1 4.4840 -1.5195 8.9493 42 1 7.2654 -0.3803 5.9241 43 1 2.8257 2.7596 3.6690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211400884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:01 Heat of formation + Delta-G solvation = 29.829630 kcal Electronic energy + Delta-G solvation = -27407.752929 eV Core-core repulsion = 23613.097625 eV Total energy + Delta-G solvation = -3794.655305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44389 -40.47251 -39.01623 -38.58505 -36.06245 -35.73485 -34.11367 -32.23300 -32.02134 -31.47896 -29.11749 -28.38226 -27.18267 -26.49935 -24.30069 -23.36703 -23.22678 -22.07307 -21.22618 -20.06107 -19.31194 -18.36380 -18.01321 -17.47608 -17.29926 -16.70608 -16.52763 -16.29641 -15.97669 -15.62150 -15.34496 -15.26642 -15.05105 -14.48451 -14.43053 -14.34357 -14.13270 -13.90219 -13.66845 -13.53249 -13.35792 -12.90131 -12.70917 -12.56787 -12.37389 -12.27234 -12.23452 -11.78048 -11.52862 -11.24313 -11.12267 -10.81563 -10.72091 -10.24799 -9.83337 -9.64985 -9.45194 -9.43363 -8.22640 -6.49537 -0.09476 0.63713 0.76945 0.85743 0.91067 1.33921 1.56620 1.72296 1.74167 2.11582 2.56580 2.66912 2.95479 3.04601 3.52459 3.92916 4.03309 4.27441 4.31159 4.33400 4.39412 4.43375 4.43401 4.49983 4.57430 4.66138 4.70912 4.77394 4.81745 4.83062 4.86628 4.97456 5.16867 5.21669 5.36628 5.40948 5.43232 5.49376 5.66260 5.66943 5.83524 5.98572 6.05153 6.13178 6.26859 6.39467 6.54825 6.73451 6.82411 6.85397 7.16231 7.84463 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003719 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.927722 B = 7527.573451 C = 8080.618199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.143 6.143 3 N -0.477 5.477 4 C 0.079 3.921 5 C 0.573 3.427 6 O -0.558 6.558 7 C -0.119 4.119 8 C -0.145 4.145 9 C -0.094 4.094 10 C -0.152 4.152 11 C 0.207 3.793 12 N -0.671 5.671 13 C -0.004 4.004 14 C -0.074 4.074 15 C -0.245 4.245 16 C -0.070 4.070 17 C -0.270 4.270 18 C 0.079 3.921 19 C -0.506 4.506 20 H 0.050 0.950 21 C 0.013 3.987 22 N -0.816 5.816 23 Si 1.110 2.890 24 H -0.263 1.263 25 H -0.255 1.255 26 H -0.287 1.287 27 C -0.159 4.159 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.148 0.852 36 H 0.108 0.892 37 H 0.396 0.604 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.279 0.721 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -0.930 -11.199 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.146 6.146 3 N -0.255 5.255 4 C -0.059 4.059 5 C 0.365 3.635 6 O -0.439 6.439 7 C -0.122 4.122 8 C -0.165 4.165 9 C -0.113 4.113 10 C -0.175 4.175 11 C 0.104 3.896 12 N -0.293 5.293 13 C -0.098 4.098 14 C -0.094 4.094 15 C -0.264 4.264 16 C -0.088 4.088 17 C -0.290 4.290 18 C 0.074 3.926 19 C -0.534 4.534 20 H 0.068 0.932 21 C -0.205 4.205 22 N -0.438 5.438 23 Si 0.933 3.067 24 H -0.190 1.190 25 H -0.179 1.179 26 H -0.214 1.214 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.194 0.806 35 H 0.166 0.834 36 H 0.127 0.873 37 H 0.231 0.769 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.660 -1.973 -10.620 16.642 hybrid contribution 0.093 2.365 -0.505 2.420 sum -12.567 0.391 -11.126 16.789 Atomic orbital electron populations 1.23665 0.79457 1.06147 1.02057 1.90454 1.22481 1.06021 1.95625 1.49780 1.58120 1.10402 1.07216 1.22147 1.03953 0.96732 0.83118 1.18521 0.76409 0.85083 0.83446 1.90758 1.49403 1.17924 1.85768 1.19495 1.05929 0.95266 0.91524 1.22408 1.01119 0.92435 1.00507 1.21234 0.98234 1.00708 0.91102 1.21048 1.03917 0.93285 0.99275 1.17899 0.93506 0.92449 0.85714 1.41169 1.76176 1.10151 1.01820 1.17296 0.97590 1.04552 0.90328 1.21100 0.95332 0.98389 0.94549 1.20595 1.02198 1.03901 0.99734 1.20702 0.93308 0.96773 0.97996 1.20759 1.02598 1.07505 0.98089 1.18054 0.90593 0.91932 0.91981 1.20413 1.09005 1.13416 1.10525 0.93151 1.28432 0.91558 1.05114 0.95381 1.70657 1.16767 1.31376 1.24973 0.83149 0.77470 0.70572 0.75490 1.19031 1.17908 1.21436 1.20546 1.07382 0.99841 0.90523 0.90880 0.84380 0.93511 0.90933 0.87257 0.89941 0.80561 0.83392 0.87345 0.76850 0.86724 0.85512 0.85619 0.88716 0.90994 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.22 10.83 113.37 1.23 1.01 16 2 O -0.14 -2.90 7.61 -38.78 -0.30 -3.19 16 3 N -0.48 -11.70 3.36 -487.45 -1.64 -13.34 16 4 C 0.08 1.37 10.83 127.77 1.38 2.75 16 5 C 0.57 18.89 7.71 86.79 0.67 19.55 16 6 O -0.56 -21.34 15.92 -3.89 -0.06 -21.40 16 7 C -0.12 -4.16 5.87 -20.11 -0.12 -4.28 16 8 C -0.14 -4.48 8.84 22.55 0.20 -4.29 16 9 C -0.09 -3.12 10.02 22.21 0.22 -2.90 16 10 C -0.15 -6.16 8.50 22.46 0.19 -5.97 16 11 C 0.21 8.54 5.66 38.21 0.22 8.76 16 12 N -0.67 -28.06 4.72 -179.46 -0.85 -28.91 16 13 C 0.00 -0.17 4.83 39.01 0.19 0.02 16 14 C -0.07 -2.92 9.96 22.38 0.22 -2.69 16 15 C -0.24 -9.11 10.03 22.41 0.22 -8.88 16 16 C -0.07 -2.75 9.96 22.01 0.22 -2.53 16 17 C -0.27 -12.42 7.48 22.46 0.17 -12.25 16 18 C 0.08 3.89 4.60 -21.17 -0.10 3.79 16 19 C -0.51 -27.13 8.18 23.35 0.19 -26.94 16 20 H 0.05 2.94 6.99 -2.91 -0.02 2.92 16 21 C 0.01 0.67 5.38 85.24 0.46 1.13 16 22 N -0.82 -44.52 13.66 21.82 0.30 -44.22 16 23 Si 1.11 47.92 24.82 68.60 1.70 49.62 16 24 H -0.26 -10.65 6.65 99.48 0.66 -9.99 16 25 H -0.25 -10.61 6.78 99.48 0.67 -9.94 16 26 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 27 C -0.16 -6.19 9.44 22.68 0.21 -5.97 16 28 H 0.07 0.68 8.12 -2.38 -0.02 0.66 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.10 8.12 -2.39 -0.02 1.08 16 33 H 0.08 1.56 7.35 -2.39 -0.02 1.54 16 34 H 0.18 4.49 4.29 -44.57 -0.19 4.30 16 35 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.11 4.82 6.39 -2.91 -0.02 4.81 16 37 H 0.40 15.24 8.83 -92.71 -0.82 14.43 16 38 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.10 4.32 2.87 -2.91 -0.01 4.31 16 42 H 0.28 15.33 8.73 -92.71 -0.81 14.52 16 43 H 0.12 4.60 7.67 -2.91 -0.02 4.58 16 Total: -1.00 -65.24 354.74 4.89 -60.35 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.05 Total: 40.77 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 5.78 Total: -39.69 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.19 Total: -86.47 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.36 Total: -24.59 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.70 Total: 49.62 kcal Total: -65.24 4.89 -60.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211400884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.180 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds