Wall clock time and date at job start Tue Mar 31 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.41606 * 113.99926 * 2 1 4 4 C 1.46503 * 119.99713 * 274.71606 * 3 2 1 5 5 C 1.34777 * 119.99988 * 94.71340 * 3 2 1 6 6 O 1.21553 * 119.99657 * 186.72818 * 5 3 2 7 7 C 1.47853 * 120.00168 * 6.72325 * 5 3 2 8 8 C 1.39624 * 120.11171 * 11.64695 * 7 5 3 9 9 C 1.37985 * 120.00952 * 180.02562 * 8 7 5 10 10 C 1.38239 * 120.23126 * 0.02562 * 9 8 7 11 11 C 1.39000 * 120.21385 * 359.97438 * 10 9 8 12 12 N 1.39749 * 120.00159 * 180.27854 * 11 10 9 13 13 C 1.39717 * 120.00046 * 326.10488 * 12 11 10 14 14 C 1.39346 * 119.95645 * 333.91983 * 13 12 11 15 15 C 1.38472 * 120.42978 * 179.72160 * 14 13 12 16 16 C 1.37695 * 120.32175 * 0.55078 * 15 14 13 17 17 C 1.40757 * 119.89366 * 359.72228 * 16 15 14 18 18 C 1.41419 * 120.20336 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99524 * 150.16447 * 18 17 16 20 20 C 1.39924 * 120.00240 * 330.17272 * 18 17 16 21 21 N 1.30827 * 120.00333 * 162.25529 * 20 18 17 22 22 Si 1.86799 * 119.99863 * 342.25263 * 20 18 17 23 23 H 1.48502 * 109.47375 * 90.22904 * 22 20 18 24 24 H 1.48500 * 109.47342 * 210.22736 * 22 20 18 25 25 H 1.48500 * 109.47185 * 330.22741 * 22 20 18 26 26 C 1.38303 * 119.95256 * 154.18978 * 13 12 11 27 27 C 1.38696 * 119.99247 * 359.97438 * 11 10 9 28 28 H 1.09005 * 109.47512 * 60.00768 * 1 2 3 29 29 H 1.09007 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47830 * 299.99840 * 1 2 3 31 31 H 1.09000 * 109.46702 * 270.00044 * 4 3 2 32 32 H 1.08998 * 109.47210 * 29.99379 * 4 3 2 33 33 H 1.08998 * 109.47119 * 149.99777 * 4 3 2 34 34 H 1.07997 * 119.99072 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.88729 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.89328 * 179.97438 * 10 9 8 37 37 H 0.96995 * 120.00193 * 146.10628 * 12 11 10 38 38 H 1.08005 * 119.78835 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.84301 * 180.25313 * 15 14 13 40 40 H 1.08001 * 120.05199 * 179.75006 * 16 15 14 41 41 H 0.97000 * 120.00162 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.15930 * 359.97438 * 26 13 12 43 43 H 1.07998 * 120.10923 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2075 2.0052 -1.2645 5 6 2.3666 1.8703 1.1633 6 8 2.7464 3.0248 1.1769 7 6 2.3013 1.0985 2.4227 8 6 2.1031 -0.2832 2.3881 9 6 2.0419 -1.0013 3.5647 10 6 2.1758 -0.3576 4.7808 11 6 2.3735 1.0176 4.8262 12 7 2.5141 1.6630 6.0578 13 6 1.8103 1.2011 7.1729 14 6 0.6141 0.5072 7.0023 15 6 -0.0885 0.0402 8.1003 16 6 0.3821 0.2664 9.3744 17 6 1.5862 0.9708 9.5627 18 6 2.0759 1.2064 10.8683 19 1 3.1391 1.2872 11.0397 20 6 1.1829 1.3347 11.9379 21 7 1.6116 1.2047 13.1671 22 14 -0.6212 1.6917 11.6107 23 1 -1.3625 0.4121 11.4755 24 1 -1.1842 2.4728 12.7413 25 1 -0.7512 2.4741 10.3553 26 6 2.2991 1.4382 8.4447 27 6 2.4375 1.7481 3.6490 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 3.1934 1.7651 -1.6625 32 1 1.4431 1.7006 -1.9793 33 1 2.1368 3.0792 -1.0924 34 1 1.9967 -0.7897 1.4402 35 1 1.8890 -2.0700 3.5356 36 1 2.1267 -0.9249 5.6984 37 1 3.1003 2.4315 6.1384 38 1 0.2344 0.3290 6.0070 39 1 -1.0127 -0.5001 7.9570 40 1 -0.1714 -0.0963 10.2278 41 1 0.9926 1.2941 13.9086 42 1 3.2242 1.9794 8.5784 43 1 2.5906 2.8167 3.6822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211400925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:05 Heat of formation + Delta-G solvation = 40.496518 kcal Electronic energy + Delta-G solvation = -26440.292735 eV Core-core repulsion = 22646.099981 eV Total energy + Delta-G solvation = -3794.192754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48727 -39.21095 -37.77117 -37.62049 -35.11022 -33.35346 -33.32351 -31.22523 -30.31259 -30.28606 -27.91706 -27.41734 -26.54545 -25.19281 -23.25565 -22.35525 -21.33494 -20.69751 -20.31802 -18.40949 -17.52806 -17.24564 -16.63667 -16.44276 -16.03507 -15.74312 -15.34130 -14.77640 -14.59261 -14.49851 -14.42533 -14.32538 -13.75870 -13.44927 -13.36455 -13.00865 -12.88074 -12.68377 -12.48275 -12.34646 -12.05135 -11.82739 -11.58721 -11.40661 -10.98420 -10.92223 -10.71007 -10.60157 -10.12841 -10.02452 -9.82089 -9.61198 -9.40829 -9.15259 -8.86211 -8.26764 -7.72261 -6.96991 -6.66085 -4.53825 0.88405 1.49417 1.51432 2.56566 2.59320 2.80241 3.11195 3.21392 3.31804 3.57865 3.85943 3.96476 3.98568 4.49455 4.66324 4.84268 4.85889 4.89768 4.99875 5.07470 5.21174 5.33908 5.36667 5.39065 5.46008 5.62115 5.68653 5.90060 5.99019 6.00695 6.21355 6.36614 6.46404 6.46428 6.57927 6.67423 6.71594 6.82233 7.01122 7.07055 7.21030 7.45992 7.57287 7.65196 7.77220 7.86603 8.17540 8.22454 8.35976 8.63343 8.79032 10.05490 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.002474 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.332420 B =11315.868546 C =11596.113039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.137 6.137 3 N -0.482 5.482 4 C 0.084 3.916 5 C 0.577 3.423 6 O -0.521 6.521 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.124 4.124 11 C 0.189 3.811 12 N -0.690 5.690 13 C 0.202 3.798 14 C -0.278 4.278 15 C -0.054 4.054 16 C -0.262 4.262 17 C 0.117 3.883 18 C -0.448 4.448 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.808 5.808 22 Si 0.917 3.083 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.247 1.247 26 C -0.250 4.250 27 C -0.115 4.115 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.285 0.715 42 H 0.102 0.898 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 -2.835 -23.929 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.141 6.141 3 N -0.262 5.262 4 C -0.056 4.056 5 C 0.369 3.631 6 O -0.398 6.398 7 C -0.123 4.123 8 C -0.147 4.147 9 C -0.125 4.125 10 C -0.146 4.146 11 C 0.089 3.911 12 N -0.313 5.313 13 C 0.107 3.893 14 C -0.300 4.300 15 C -0.073 4.073 16 C -0.281 4.281 17 C 0.113 3.887 18 C -0.476 4.476 19 H 0.108 0.892 20 C -0.134 4.134 21 N -0.432 5.432 22 Si 0.744 3.256 23 H -0.195 1.195 24 H -0.221 1.221 25 H -0.171 1.171 26 C -0.273 4.273 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.239 0.761 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.520 -2.443 -23.603 23.862 hybrid contribution -0.896 0.365 0.086 0.971 sum -3.416 -2.078 -23.517 23.855 Atomic orbital electron populations 1.23405 0.81374 1.04223 1.01754 1.90523 1.20490 1.07074 1.95995 1.49840 1.59206 1.10090 1.07068 1.21919 1.02193 0.97572 0.83918 1.18573 0.76344 0.85482 0.82699 1.90810 1.47671 1.16194 1.85112 1.19352 1.07167 0.94159 0.91630 1.22064 0.99882 0.92956 0.99807 1.20979 1.00044 0.99851 0.91647 1.21425 1.01108 0.92916 0.99109 1.17589 0.96852 0.91246 0.85411 1.42179 1.49302 1.34278 1.05538 1.17510 0.90687 0.95710 0.85395 1.20138 0.98011 1.14367 0.97480 1.20410 0.97148 0.97097 0.92621 1.21103 1.01775 1.09440 0.95831 1.17480 0.90329 0.88022 0.92876 1.19468 0.96360 1.42212 0.89578 0.89198 1.26161 1.01750 0.91243 0.94296 1.69693 1.38726 1.34734 1.00060 0.86281 0.81170 0.79359 0.78802 1.19467 1.22084 1.17050 1.20614 1.03888 1.12427 0.90383 1.20897 1.02921 0.99913 0.90069 0.92766 0.87214 0.92328 0.91518 0.90583 0.89222 0.83053 0.85628 0.84733 0.76062 0.88463 0.88654 0.87951 0.90419 0.88024 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 11.12 101.05 1.12 1.06 16 2 O -0.14 -1.22 7.53 -11.47 -0.09 -1.31 16 3 N -0.48 -5.02 3.35 -68.04 -0.23 -5.25 16 4 C 0.08 0.62 10.85 59.85 0.65 1.27 16 5 C 0.58 7.77 7.68 -12.33 -0.09 7.67 16 6 O -0.52 -8.29 15.96 5.32 0.08 -8.20 16 7 C -0.12 -1.64 5.85 -105.00 -0.61 -2.25 16 8 C -0.13 -1.53 8.81 -39.16 -0.35 -1.87 16 9 C -0.11 -1.31 10.02 -39.67 -0.40 -1.70 16 10 C -0.12 -1.85 7.83 -39.30 -0.31 -2.15 16 11 C 0.19 2.98 5.82 -83.80 -0.49 2.49 16 12 N -0.69 -11.82 5.45 -8.48 -0.05 -11.87 16 13 C 0.20 4.13 6.01 -83.83 -0.50 3.62 16 14 C -0.28 -5.65 7.98 -39.08 -0.31 -5.96 16 15 C -0.05 -1.14 10.02 -39.69 -0.40 -1.54 16 16 C -0.26 -6.21 7.28 -38.83 -0.28 -6.49 16 17 C 0.12 2.92 5.11 -106.85 -0.55 2.37 16 18 C -0.45 -12.00 9.57 -37.74 -0.36 -12.36 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.08 2.20 5.41 -17.35 -0.09 2.11 16 21 N -0.81 -21.40 13.93 55.55 0.77 -20.63 16 22 Si 0.92 20.82 24.56 -169.99 -4.17 16.64 16 23 H -0.27 -5.90 6.46 56.52 0.36 -5.53 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.25 -5.77 7.05 56.52 0.40 -5.38 16 26 C -0.25 -5.70 9.68 -38.67 -0.37 -6.08 16 27 C -0.12 -1.71 9.51 -38.96 -0.37 -2.08 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.11 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.71 7.34 -51.93 -0.38 0.33 16 34 H 0.15 1.56 4.73 -53.55 -0.25 1.31 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.13 2.16 6.75 -52.49 -0.35 1.81 16 37 H 0.40 6.19 8.89 -40.82 -0.36 5.82 16 38 H 0.10 1.83 6.44 -52.48 -0.34 1.49 16 39 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.10 2.44 4.54 -52.49 -0.24 2.20 16 41 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.13 1.93 7.69 -52.49 -0.40 1.53 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -29.83 357.56 -7.32 -37.15 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.31 Total: 9.98 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.72 Total: -21.90 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.50 Total: -37.75 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.00 Total: -9.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.83 -7.32 -37.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211400925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.644 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds