Wall clock time and date at job start Tue Mar 31 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.41606 * 113.99926 * 2 1 4 4 C 1.46503 * 119.99713 * 274.71606 * 3 2 1 5 5 C 1.34777 * 119.99988 * 94.71340 * 3 2 1 6 6 O 1.21553 * 119.99657 * 186.72818 * 5 3 2 7 7 C 1.47853 * 120.00168 * 6.72325 * 5 3 2 8 8 C 1.39624 * 120.11171 * 11.64695 * 7 5 3 9 9 C 1.37985 * 120.00952 * 180.02562 * 8 7 5 10 10 C 1.38239 * 120.23126 * 0.02562 * 9 8 7 11 11 C 1.39000 * 120.21385 * 359.97438 * 10 9 8 12 12 N 1.39749 * 120.00159 * 180.27854 * 11 10 9 13 13 C 1.39717 * 120.00046 * 326.10488 * 12 11 10 14 14 C 1.39346 * 119.95645 * 333.91983 * 13 12 11 15 15 C 1.38472 * 120.42978 * 179.72160 * 14 13 12 16 16 C 1.37695 * 120.32175 * 0.55078 * 15 14 13 17 17 C 1.40757 * 119.89366 * 359.72228 * 16 15 14 18 18 C 1.41419 * 120.20336 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99524 * 150.16447 * 18 17 16 20 20 C 1.39924 * 120.00240 * 330.17272 * 18 17 16 21 21 N 1.30827 * 120.00333 * 162.25529 * 20 18 17 22 22 Si 1.86799 * 119.99863 * 342.25263 * 20 18 17 23 23 H 1.48502 * 109.47375 * 90.22904 * 22 20 18 24 24 H 1.48500 * 109.47342 * 210.22736 * 22 20 18 25 25 H 1.48500 * 109.47185 * 330.22741 * 22 20 18 26 26 C 1.38303 * 119.95256 * 154.18978 * 13 12 11 27 27 C 1.38696 * 119.99247 * 359.97438 * 11 10 9 28 28 H 1.09005 * 109.47512 * 60.00768 * 1 2 3 29 29 H 1.09007 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47830 * 299.99840 * 1 2 3 31 31 H 1.09000 * 109.46702 * 270.00044 * 4 3 2 32 32 H 1.08998 * 109.47210 * 29.99379 * 4 3 2 33 33 H 1.08998 * 109.47119 * 149.99777 * 4 3 2 34 34 H 1.07997 * 119.99072 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.88729 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.89328 * 179.97438 * 10 9 8 37 37 H 0.96995 * 120.00193 * 146.10628 * 12 11 10 38 38 H 1.08005 * 119.78835 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.84301 * 180.25313 * 15 14 13 40 40 H 1.08001 * 120.05199 * 179.75006 * 16 15 14 41 41 H 0.97000 * 120.00162 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.15930 * 359.97438 * 26 13 12 43 43 H 1.07998 * 120.10923 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2075 2.0052 -1.2645 5 6 2.3666 1.8703 1.1633 6 8 2.7464 3.0248 1.1769 7 6 2.3013 1.0985 2.4227 8 6 2.1031 -0.2832 2.3881 9 6 2.0419 -1.0013 3.5647 10 6 2.1758 -0.3576 4.7808 11 6 2.3735 1.0176 4.8262 12 7 2.5141 1.6630 6.0578 13 6 1.8103 1.2011 7.1729 14 6 0.6141 0.5072 7.0023 15 6 -0.0885 0.0402 8.1003 16 6 0.3821 0.2664 9.3744 17 6 1.5862 0.9708 9.5627 18 6 2.0759 1.2064 10.8683 19 1 3.1391 1.2872 11.0397 20 6 1.1829 1.3347 11.9379 21 7 1.6116 1.2047 13.1671 22 14 -0.6212 1.6917 11.6107 23 1 -1.3625 0.4121 11.4755 24 1 -1.1842 2.4728 12.7413 25 1 -0.7512 2.4741 10.3553 26 6 2.2991 1.4382 8.4447 27 6 2.4375 1.7481 3.6490 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 3.1934 1.7651 -1.6625 32 1 1.4431 1.7006 -1.9793 33 1 2.1368 3.0792 -1.0924 34 1 1.9967 -0.7897 1.4402 35 1 1.8890 -2.0700 3.5356 36 1 2.1267 -0.9249 5.6984 37 1 3.1003 2.4315 6.1384 38 1 0.2344 0.3290 6.0070 39 1 -1.0127 -0.5001 7.9570 40 1 -0.1714 -0.0963 10.2278 41 1 0.9926 1.2941 13.9086 42 1 3.2242 1.9794 8.5784 43 1 2.5906 2.8167 3.6822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211400925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:05 Heat of formation + Delta-G solvation = 23.180712 kcal Electronic energy + Delta-G solvation = -26441.043604 eV Core-core repulsion = 22646.099981 eV Total energy + Delta-G solvation = -3794.943623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51273 -40.50750 -39.11792 -38.55417 -36.59207 -35.13928 -34.10618 -32.40109 -32.01164 -31.67391 -29.06821 -28.37997 -27.32646 -26.96090 -24.34716 -23.59030 -22.85449 -22.22036 -21.44653 -19.69453 -19.05173 -18.16563 -17.81617 -17.56157 -17.36795 -16.89191 -16.74964 -16.42952 -15.73966 -15.56799 -15.36601 -15.36558 -15.15682 -14.67484 -14.51532 -14.36761 -14.14420 -13.98996 -13.54278 -13.52562 -13.39961 -12.96326 -12.79998 -12.68124 -12.56930 -12.49288 -12.36313 -11.78838 -11.62902 -11.54760 -11.35161 -10.96831 -10.85811 -10.26292 -9.90725 -9.68311 -9.53853 -8.89640 -8.16124 -6.52998 -0.19927 0.34787 0.76881 0.79664 1.01637 1.28412 1.42817 1.50980 1.65818 2.13886 2.39081 2.60703 2.83520 2.91572 3.53029 3.87666 3.95957 4.21701 4.27337 4.30819 4.39015 4.41702 4.45373 4.50112 4.53202 4.55898 4.60124 4.70267 4.78468 4.83005 4.89552 4.93844 5.02248 5.14891 5.21279 5.29149 5.37998 5.49511 5.54622 5.67524 5.77269 5.87744 5.93382 6.08420 6.25493 6.33518 6.59839 6.73065 6.78346 6.83646 6.90475 8.19027 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.002474 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.332420 B =11315.868546 C =11596.113039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.141 6.141 3 N -0.477 5.477 4 C 0.079 3.921 5 C 0.571 3.429 6 O -0.557 6.557 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.095 4.095 10 C -0.134 4.134 11 C 0.168 3.832 12 N -0.690 5.690 13 C 0.215 3.785 14 C -0.262 4.262 15 C -0.051 4.051 16 C -0.279 4.279 17 C 0.100 3.900 18 C -0.486 4.486 19 H 0.053 0.947 20 C 0.048 3.952 21 N -0.850 5.850 22 Si 0.971 3.029 23 H -0.253 1.253 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.269 4.269 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.409 0.591 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.294 0.706 42 H 0.098 0.902 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 -4.594 -27.963 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.144 6.144 3 N -0.256 5.256 4 C -0.060 4.060 5 C 0.363 3.637 6 O -0.437 6.437 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.113 4.113 10 C -0.156 4.156 11 C 0.070 3.930 12 N -0.313 5.313 13 C 0.118 3.882 14 C -0.284 4.284 15 C -0.070 4.070 16 C -0.299 4.299 17 C 0.097 3.903 18 C -0.516 4.516 19 H 0.072 0.928 20 C -0.166 4.166 21 N -0.476 5.476 22 Si 0.795 3.205 23 H -0.178 1.178 24 H -0.207 1.207 25 H -0.182 1.182 26 C -0.291 4.291 27 C -0.143 4.143 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.192 0.808 35 H 0.177 0.823 36 H 0.141 0.859 37 H 0.246 0.754 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.802 -4.230 -27.707 28.436 hybrid contribution -0.136 0.818 0.907 1.229 sum -4.938 -3.411 -26.800 27.464 Atomic orbital electron populations 1.23651 0.79606 1.06110 1.01880 1.90466 1.22186 1.05823 1.95974 1.49802 1.58202 1.10566 1.07002 1.22138 1.03867 0.96896 0.83085 1.18553 0.76503 0.85151 0.83512 1.90793 1.49487 1.17554 1.85838 1.19555 1.06971 0.95096 0.91446 1.22362 0.97607 0.92052 1.00786 1.21312 0.98193 1.01401 0.90417 1.21466 1.01855 0.92385 0.99852 1.17698 0.98747 0.91812 0.84749 1.42111 1.49256 1.34617 1.05336 1.17524 0.90714 0.94502 0.85495 1.20469 0.97060 1.12429 0.98429 1.20787 0.98244 0.96412 0.91509 1.21180 1.01519 1.10094 0.97122 1.17612 0.91516 0.88584 0.92559 1.19447 0.94995 1.45682 0.91461 0.92834 1.26829 1.05223 0.90754 0.93843 1.69723 1.40270 1.36824 1.00828 0.85450 0.77012 0.79699 0.78349 1.17782 1.20700 1.18198 1.20698 1.04032 1.13192 0.91223 1.20870 1.03215 0.99732 0.90446 0.91264 0.84341 0.93636 0.90564 0.87610 0.90120 0.80811 0.82312 0.85898 0.75410 0.86119 0.85052 0.88199 0.89587 0.88385 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.13 11.12 113.37 1.26 1.13 16 2 O -0.14 -1.94 7.53 -38.80 -0.29 -2.23 16 3 N -0.48 -8.63 3.35 -487.46 -1.63 -10.26 16 4 C 0.08 0.96 10.85 127.77 1.39 2.35 16 5 C 0.57 14.45 7.68 86.79 0.67 15.11 16 6 O -0.56 -17.49 15.96 -3.88 -0.06 -17.55 16 7 C -0.13 -3.21 5.85 -20.11 -0.12 -3.33 16 8 C -0.11 -2.20 8.81 22.54 0.20 -2.00 16 9 C -0.09 -1.95 10.02 22.21 0.22 -1.72 16 10 C -0.13 -3.65 7.83 22.45 0.18 -3.47 16 11 C 0.17 5.05 5.82 38.17 0.22 5.27 16 12 N -0.69 -23.24 5.45 -180.75 -0.99 -24.23 16 13 C 0.21 8.62 6.01 38.17 0.23 8.85 16 14 C -0.26 -9.99 7.98 22.59 0.18 -9.81 16 15 C -0.05 -2.02 10.02 22.20 0.22 -1.80 16 16 C -0.28 -13.09 7.28 22.76 0.17 -12.93 16 17 C 0.10 5.17 5.11 -21.31 -0.11 5.06 16 18 C -0.49 -27.69 9.57 23.46 0.22 -27.47 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 20 C 0.05 2.60 5.41 85.25 0.46 3.06 16 21 N -0.85 -47.12 13.93 21.82 0.30 -46.81 16 22 Si 0.97 43.36 24.56 68.60 1.68 45.04 16 23 H -0.25 -10.52 6.46 99.48 0.64 -9.88 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.26 -11.84 7.05 99.48 0.70 -11.14 16 26 C -0.27 -12.55 9.68 22.86 0.22 -12.33 16 27 C -0.12 -3.44 9.51 22.67 0.22 -3.23 16 28 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.14 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.16 7.34 -2.39 -0.02 1.15 16 34 H 0.18 2.76 4.73 -19.70 -0.09 2.67 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.12 3.66 6.75 -2.91 -0.02 3.64 16 37 H 0.41 12.65 8.89 -92.71 -0.82 11.83 16 38 H 0.12 4.08 6.44 -2.91 -0.02 4.06 16 39 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 40 H 0.10 4.68 4.54 -2.91 -0.01 4.67 16 41 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 42 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.12 3.66 7.69 -2.91 -0.02 3.64 16 Total: -1.00 -67.86 357.56 4.92 -62.94 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.08 Total: 30.36 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 5.83 Total: -37.25 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -2.32 Total: -81.30 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.35 Total: -19.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.68 Total: 45.04 kcal Total: -67.86 4.92 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211400925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.117 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds