Wall clock time and date at job start Tue Mar 31 2020 14:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34777 * 120.00040 * 2 1 4 4 O 1.21280 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.50702 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.38288 * 119.92073 * 269.72314 * 6 5 3 8 8 C 1.38100 * 120.07812 * 179.76224 * 7 6 5 9 9 C 1.38939 * 119.91519 * 0.49234 * 8 7 6 10 10 N 1.39677 * 120.07462 * 179.79012 * 9 8 7 11 11 C 1.39793 * 119.99505 * 319.98035 * 10 9 8 12 12 C 1.38772 * 120.11101 * 352.45539 * 11 10 9 13 13 C 1.38182 * 119.99333 * 179.74045 * 12 11 10 14 14 C 1.38356 * 120.20776 * 0.53608 * 13 12 11 15 15 C 1.38178 * 120.20740 * 359.74045 * 14 13 12 16 16 C 1.38715 * 120.01172 * 359.97438 * 15 14 13 17 17 O 1.35789 * 120.10546 * 180.02562 * 16 15 14 18 18 C 1.34802 * 116.99930 * 6.39320 * 17 16 15 19 19 H 1.07999 * 119.99828 * 354.70978 * 18 17 16 20 20 C 1.38626 * 120.00272 * 174.71114 * 18 17 16 21 21 N 1.31573 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99518 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47106 * 90.00300 * 22 20 18 24 24 H 1.48500 * 109.46788 * 209.99926 * 22 20 18 25 25 H 1.48495 * 109.47312 * 329.99816 * 22 20 18 26 26 C 1.38938 * 119.85432 * 359.75967 * 9 8 7 27 27 C 1.38094 * 119.91678 * 0.02562 * 26 9 8 28 28 H 1.08991 * 109.47337 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47177 * 300.00392 * 1 2 3 30 30 H 1.09003 * 109.47096 * 60.00061 * 1 2 3 31 31 H 0.96996 * 119.99931 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46810 * 299.99594 * 5 3 2 33 33 H 1.08997 * 109.46928 * 59.99942 * 5 3 2 34 34 H 1.07996 * 119.96403 * 0.02562 * 7 6 5 35 35 H 1.07993 * 120.04546 * 180.25545 * 8 7 6 36 36 H 0.97001 * 120.00747 * 139.98760 * 10 9 8 37 37 H 1.07997 * 120.00339 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.89790 * 180.27591 * 13 12 11 39 39 H 1.07995 * 119.89193 * 179.76425 * 14 13 12 40 40 H 1.08001 * 119.99159 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99832 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.04356 * 179.97438 * 26 9 8 43 43 H 1.08002 * 119.96122 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1483 2.5880 -0.0011 7 6 4.3833 3.2361 -1.1999 8 6 4.8390 4.5397 -1.2042 9 6 5.0711 5.1966 -0.0021 10 7 5.5362 6.5136 -0.0025 11 6 6.5028 6.9131 -0.9300 12 6 7.1155 5.9726 -1.7460 13 6 8.0667 6.3708 -2.6657 14 6 8.4196 7.7047 -2.7690 15 6 7.8191 8.6476 -1.9568 16 6 6.8588 8.2584 -1.0346 17 8 6.2671 9.1835 -0.2359 18 6 6.5584 10.4772 -0.4780 19 1 7.2997 10.7339 -1.2203 20 6 5.9067 11.4780 0.2258 21 7 6.1915 12.7406 -0.0101 22 14 4.6242 11.0337 1.5092 23 1 5.2813 10.8747 2.8314 24 1 3.6082 12.1139 1.5882 25 1 3.9634 9.7596 1.1284 26 6 4.8390 4.5407 1.2005 27 6 4.3791 3.2386 1.1973 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6532 0.8892 33 1 4.0089 0.6535 -0.8908 34 1 4.2061 2.7237 -2.1339 35 1 5.0183 5.0468 -2.1407 36 1 5.1887 7.1511 0.6408 37 1 6.8455 4.9300 -1.6653 38 1 8.5393 5.6381 -3.3030 39 1 9.1664 8.0098 -3.4870 40 1 8.0975 9.6878 -2.0401 41 1 5.7357 13.4409 0.4826 42 1 5.0188 5.0482 2.1367 43 1 4.1988 2.7279 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:43 Heat of formation + Delta-G solvation = -0.237839 kcal Electronic energy + Delta-G solvation = -26236.367305 eV Core-core repulsion = 22440.408177 eV Total energy + Delta-G solvation = -3795.959128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27803 -39.67517 -38.65999 -36.69196 -35.22435 -34.77247 -32.40884 -31.93221 -30.93764 -29.29695 -28.97060 -27.45359 -25.54161 -25.26240 -22.81094 -22.15510 -21.10833 -20.98402 -20.42717 -17.95080 -17.61571 -17.50780 -17.05666 -16.41845 -16.08870 -15.69795 -15.09801 -14.81992 -14.57416 -14.33985 -14.05307 -13.94220 -13.79090 -13.42669 -13.38346 -13.30110 -13.18669 -12.63768 -12.53052 -12.29795 -12.16878 -12.00205 -11.72568 -11.50827 -11.09927 -10.93799 -10.84516 -10.64506 -10.32012 -10.22693 -10.03324 -9.44479 -9.44077 -8.87121 -8.74129 -8.40238 -7.67153 -6.59980 -6.39875 -4.04628 1.40163 1.57527 2.19072 2.32072 2.44662 2.97819 3.21592 3.24146 3.36523 3.76076 3.92900 4.22609 4.53820 4.54897 4.72127 4.76423 4.79949 4.98085 5.10032 5.12313 5.14518 5.20581 5.25451 5.45991 5.51712 5.57076 5.74175 5.78251 5.84380 5.99729 6.06399 6.10578 6.19179 6.35631 6.50403 6.57248 6.63368 6.69088 6.83653 7.02332 7.11585 7.17772 7.33048 7.53973 7.66880 7.93592 8.00352 8.06866 8.13459 8.95289 9.55996 10.68158 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002905 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.420085 B = 9635.046972 C =11057.339733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.743 5.743 3 C 0.508 3.492 4 O -0.523 6.523 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.159 4.159 9 C 0.196 3.804 10 N -0.680 5.680 11 C 0.125 3.875 12 C -0.150 4.150 13 C -0.164 4.164 14 C -0.113 4.113 15 C -0.191 4.191 16 C 0.115 3.885 17 O -0.225 6.225 18 C -0.383 4.383 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.904 3.096 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.261 1.261 26 C -0.165 4.165 27 C -0.074 4.074 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.401 0.599 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.279 0.721 42 H 0.122 0.878 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -26.767 -0.219 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.396 5.396 3 C 0.294 3.706 4 O -0.397 6.397 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.095 4.095 8 C -0.181 4.181 9 C 0.096 3.904 10 N -0.303 5.303 11 C 0.028 3.972 12 C -0.172 4.172 13 C -0.184 4.184 14 C -0.133 4.133 15 C -0.211 4.211 16 C 0.063 3.937 17 O -0.131 6.131 18 C -0.459 4.459 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.186 1.186 26 C -0.186 4.186 27 C -0.093 4.093 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.234 0.766 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.615 -25.791 -0.036 26.396 hybrid contribution -0.447 -0.025 0.739 0.864 sum -6.062 -25.816 0.704 26.528 Atomic orbital electron populations 1.21512 0.79821 1.01982 1.02395 1.45865 1.07707 1.08789 1.77243 1.20849 0.90331 0.83522 0.75867 1.90766 1.70283 1.31174 1.47496 1.20546 0.91424 0.96405 1.04802 1.18987 1.04144 0.94772 0.93635 1.20695 0.97579 0.94219 0.96994 1.21120 1.03412 0.95802 0.97721 1.17742 0.94126 0.85038 0.93454 1.41932 1.42522 1.08597 1.37289 1.17027 0.94083 0.90380 0.95708 1.20630 0.99810 0.97960 0.98777 1.20487 1.00874 0.95700 1.01297 1.20721 1.00105 0.92936 0.99491 1.21089 0.99874 1.00873 0.99292 1.18634 0.94943 0.87404 0.92767 1.83459 1.63097 1.16299 1.50280 1.20695 1.23795 0.77238 1.24130 0.87664 1.24426 0.97759 0.93830 0.98051 1.69647 1.42354 0.98665 1.41337 0.86216 0.80841 0.78844 0.81147 1.19950 1.20821 1.18565 1.20902 1.05819 0.94954 0.96943 1.20635 0.97659 0.94040 0.96978 0.90825 0.92312 0.92288 0.76618 0.88279 0.88224 0.86429 0.85119 0.74983 0.85619 0.87249 0.87247 0.84714 0.91125 0.86000 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.74 -4.86 5.71 -67.08 -0.38 -5.25 16 3 C 0.51 5.17 7.82 -10.99 -0.09 5.09 16 4 O -0.52 -8.07 16.03 5.56 0.09 -7.99 16 5 C -0.09 -0.73 5.83 -29.03 -0.17 -0.90 16 6 C -0.11 -1.35 4.38 -104.58 -0.46 -1.81 16 7 C -0.08 -0.98 9.69 -39.61 -0.38 -1.36 16 8 C -0.16 -2.42 7.35 -39.37 -0.29 -2.71 16 9 C 0.20 3.22 5.93 -83.76 -0.50 2.72 16 10 N -0.68 -12.82 5.47 -8.28 -0.05 -12.86 16 11 C 0.13 2.53 6.45 -83.54 -0.54 1.99 16 12 C -0.15 -2.66 7.98 -39.40 -0.31 -2.97 16 13 C -0.16 -2.77 10.04 -39.56 -0.40 -3.17 16 14 C -0.11 -2.06 10.04 -39.56 -0.40 -2.46 16 15 C -0.19 -4.13 9.16 -39.43 -0.36 -4.49 16 16 C 0.12 2.66 6.66 -38.92 -0.26 2.40 16 17 O -0.23 -5.81 7.85 0.01 0.00 -5.81 16 18 C -0.38 -10.72 9.95 30.88 0.31 -10.42 16 19 H 0.11 3.02 5.45 -52.49 -0.29 2.73 16 20 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 21 N -0.88 -25.58 13.96 55.48 0.77 -24.81 16 22 Si 0.90 21.73 28.62 -169.99 -4.86 16.86 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.16 -2.41 9.97 -39.37 -0.39 -2.80 16 27 C -0.07 -0.94 9.69 -39.61 -0.38 -1.32 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.40 1.20 8.83 -40.82 -0.36 0.84 16 32 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 2.03 6.48 -52.49 -0.34 1.69 16 36 H 0.41 8.05 8.22 -40.82 -0.34 7.72 16 37 H 0.13 1.99 5.25 -52.49 -0.28 1.71 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.14 3.04 5.65 -52.49 -0.30 2.75 16 41 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -33.72 365.16 -8.25 -41.97 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.25 Total: 11.74 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -4.08 Total: -19.37 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.35 Total: -42.91 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.72 -8.25 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds